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Aliases for FAM160A1 Gene

Aliases for FAM160A1 Gene

  • Family With Sequence Similarity 160, Member A1 2 3

External Ids for FAM160A1 Gene

Summaries for FAM160A1 Gene

GeneCards Summary for FAM160A1 Gene

FAM160A1 (Family With Sequence Similarity 160, Member A1) is a Protein Coding gene. An important paralog of this gene is FAM160A2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM160A1 Gene

Genomics for FAM160A1 Gene

Genomic Location for FAM160A1 Gene

Start:
151,409,216 bp from pter
End:
151,670,503 bp from pter
Size:
261,288 bases
Orientation:
Plus strand

Genomic View for FAM160A1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM160A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM160A1 Gene

Regulatory Elements for FAM160A1 Gene

Proteins for FAM160A1 Gene

  • Protein details for FAM160A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q05DH4-F16A1_HUMAN
    Recommended name:
    Protein FAM160A1
    Protein Accession:
    Q05DH4
    Secondary Accessions:
    • Q6ZUS2

    Protein attributes for FAM160A1 Gene

    Size:
    1040 amino acids
    Molecular mass:
    116621 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH14937.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH14937.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=BAC86147.1; Type=Frameshift; Positions=859, 986; Evidence={ECO:0000305}; Sequence=BAC86147.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305};

neXtProt entry for FAM160A1 Gene

Proteomics data for FAM160A1 Gene at MOPED

Post-translational modifications for FAM160A1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM160A1 Gene

No data available for DME Specific Peptides for FAM160A1 Gene

Domains for FAM160A1 Gene

Protein Domains for FAM160A1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

F16A1_HUMAN
Family:
  • Belongs to the UPF0518 family.:
    • Q05DH4
genes like me logo Genes that share domains with FAM160A1: view

No data available for Gene Families for FAM160A1 Gene

Function for FAM160A1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM160A1 Gene

Localization for FAM160A1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM160A1 Gene COMPARTMENTS Subcellular localization image for FAM160A1 gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1
peroxisome 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for FAM160A1 Gene

Pathways for FAM160A1 Gene

SuperPathways for FAM160A1 Gene

No Data Available

Interacting Proteins for FAM160A1 Gene

Selected Interacting proteins: Q05DH4-F16A1_HUMAN for FAM160A1 Gene via I2D

Symbol External ID(s) Details
GLI2
UBE2M

Gene Ontology (GO) - Biological Process for FAM160A1 Gene

None

No data available for Pathways by source for FAM160A1 Gene

Transcripts for FAM160A1 Gene

mRNA/cDNA for FAM160A1 Gene

(7) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM160A1 Gene

Family with sequence similarity 160, member A1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM160A1 Gene

No ASD Table

Relevant External Links for FAM160A1 Gene

GeneLoc Exon Structure for
FAM160A1
ECgene alternative splicing isoforms for
FAM160A1

Expression for FAM160A1 Gene

mRNA expression in normal human tissues for FAM160A1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM160A1 Gene

This gene is overexpressed in Muscle - Skeletal (7.4), Skin - Sun Exposed (Lower leg) (5.0), Skin - Not Sun Exposed (Suprapubic) (4.9), and Esophagus - Mucosa (4.6).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for FAM160A1 Gene

SOURCE GeneReport for Unigene cluster for FAM160A1 Gene Hs.633810

genes like me logo Genes that share expressions with FAM160A1: view

Orthologs for FAM160A1 Gene

This gene was present in the common ancestor of animals.

Orthologs for FAM160A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM160A1 36
  • 99.46 (n)
  • 99.42 (a)
FAM160A1 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM160A1 36
  • 83.64 (n)
  • 83.61 (a)
FAM160A1 37
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM160A1 36
  • 85.87 (n)
  • 86.51 (a)
FAM160A1 37
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam160a1 36
  • 83.28 (n)
  • 84.85 (a)
Fam160a1 16
Fam160a1 37
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM160A1 37
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM160A1 37
  • 66 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam160a1 36
  • 81.22 (n)
  • 81.14 (a)
chicken
(Gallus gallus)
Aves FAM160A1 37
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM160A1 37
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam160a1 36
  • 65.98 (n)
  • 64.49 (a)
zebrafish
(Danio rerio)
Actinopterygii fam160a1 36
  • 60.59 (n)
  • 59.92 (a)
fam160a1 37
  • 55 (a)
OneToMany
FAM160A1 (2 of 2) 37
  • 48 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG3558 37
  • 26 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea C05D11.8 37
  • 23 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10656 37
  • 32 (a)
OneToMany
Species with no ortholog for FAM160A1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FAM160A1 Gene

ENSEMBL:
Gene Tree for FAM160A1 (if available)
TreeFam:
Gene Tree for FAM160A1 (if available)

Paralogs for FAM160A1 Gene

Paralogs for FAM160A1 Gene

Selected SIMAP similar genes for FAM160A1 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with FAM160A1: view

Variants for FAM160A1 Gene

Sequence variations from dbSNP and Humsavar for FAM160A1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs13327 -- 151,408,065(+) CAAGA(A/G)GCGTG upstream-variant-2KB
rs718800 -- 151,628,155(-) CTCAG(A/T)CATTC intron-variant
rs718801 -- 151,628,095(-) ATATA(C/T)AGCAA intron-variant
rs727313 -- 151,580,008(+) tgtta(C/T)tgtac intron-variant
rs745151 -- 151,564,630(-) AATAC(C/T)ACAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM160A1 Gene

Variant ID Type Subtype PubMed ID
nsv880262 CNV Gain 21882294
nsv881526 CNV Gain 21882294
nsv880624 CNV Loss 21882294
nsv822774 CNV Gain 20364138
esv2611953 CNV Deletion 19546169
esv2051581 CNV Deletion 18987734
esv3948 CNV Deletion 18987735
esv2728537 CNV Deletion 23290073
esv2670825 CNV Deletion 23128226
esv2728538 CNV Deletion 23290073
nsv881342 CNV Loss 21882294
nsv830114 CNV Loss 17160897
nsv508321 CNV Loss 20534489
nsv4551 CNV Loss 18451855

Relevant External Links for FAM160A1 Gene

HapMap Linkage Disequilibrium report
FAM160A1

Disorders for FAM160A1 Gene

Relevant External Links for FAM160A1

Genetic Association Database (GAD)
FAM160A1
Human Genome Epidemiology (HuGE) Navigator
FAM160A1
genes like me logo Genes that share disorders with FAM160A1: view

No data available for UniProtKB/Swiss-Prot for FAM160A1 Gene

Publications for FAM160A1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
  5. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier L.D. … Marra M. (Genome Res. 1996) 3

Products for FAM160A1 Gene

Sources for FAM160A1 Gene

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