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Aliases for FAM156A Gene

Aliases for FAM156A Gene

  • Family With Sequence Similarity 156 Member A 2 3 5
  • Transmembrane Protein 29/29B 3 4
  • Transmembrane Protein 29 2 3
  • TMEM29 3 4
  • Family With Sequence Similarity 156, Member A 2
  • Protein FAM156A/FAM156B 3
  • Protein FAM156A 3
  • FAM156A FAM156B 4
  • PRO0659 3
  • TMEM29B 4

External Ids for FAM156A Gene

Previous HGNC Symbols for FAM156A Gene

  • TMEM29

Previous GeneCards Identifiers for FAM156A Gene

  • GC0XM050038

Summaries for FAM156A Gene

GeneCards Summary for FAM156A Gene

FAM156A (Family With Sequence Similarity 156 Member A) is a Protein Coding gene. GO annotations related to this gene include methylated histone binding. An important paralog of this gene is FAM156B.

Gene Wiki entry for FAM156A Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM156A Gene

Genomics for FAM156A Gene

Regulatory Elements for FAM156A Gene

Enhancers for FAM156A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF052923 0.8 Ensembl ENCODE 33.2 +71.7 71672 1.6 IKZF1 ASH2L NBN NFE2 FOXP2 SPI1 FAM156A GC0XP052932 FAM156B
GH0XF052851 0.9 Ensembl ENCODE 33.1 +142.7 142715 2.7 SPI1 FAM156A XAGE3 EIF4A2P4
GH0XF052994 0.7 ENCODE 32.7 +0.1 98 2.6 ATF1 PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 BRCA1 YY1 FOS SP3 FAM156A KANTR ENSG00000270189 GC0XP052962
GH0XF052974 0.8 ENCODE 32.7 +20.2 20188 2.6 ZNF335 ZNF766 NFIA CEBPA CEBPG ATF2 RARA FAM156A FAM156B GPR173 ENSG00000270189 GC0XP052962
GH0XF052919 1.5 FANTOM5 Ensembl ENCODE 32.7 +74.4 74447 2.8 HDGF PKNOX1 WRNIP1 ARID4B SIN3A CBX5 ZNF207 SP3 REST TBX21 FAM156A KANTR ACTG1P10 TSPYL2 KDM5C GC0XP052932 FAM156B
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM156A on UCSC Golden Path with GeneCards custom track

Promoters for FAM156A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000071709 172 2200 PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 YY1 SP3 NFYC TBX21 ZNF518A

Genomic Location for FAM156A Gene

Chromosome:
X
Start:
52,926,402 bp from pter
End:
52,995,472 bp from pter
Size:
69,071 bases
Orientation:
Minus strand

Genomic View for FAM156A Gene

Genes around FAM156A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM156A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM156A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM156A Gene

Proteins for FAM156A Gene

  • Protein details for FAM156A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NDB6-FA156_HUMAN
    Recommended name:
    Protein FAM156A/FAM156B
    Protein Accession:
    Q8NDB6
    Secondary Accessions:
    • B3KQ92
    • Q5JPL2
    • Q5JPL3
    • Q5JPL4
    • Q5JPL5
    • Q5JPL6
    • Q68D17
    • Q6NVY3
    • Q9UI49

    Protein attributes for FAM156A Gene

    Size:
    213 amino acids
    Molecular mass:
    24412 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAF24055.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH00867.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for FAM156A Gene

Post-translational modifications for FAM156A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM156A Gene

Domains & Families for FAM156A Gene

Protein Domains for FAM156A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM156A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM156A: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FAM156A Gene

Function for FAM156A Gene

Gene Ontology (GO) - Molecular Function for FAM156A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0035064 methylated histone binding IEA --
genes like me logo Genes that share ontologies with FAM156A: view

Phenotypes for FAM156A Gene

GenomeRNAi human phenotypes for FAM156A:
genes like me logo Genes that share phenotypes with FAM156A: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM156A Gene

Localization for FAM156A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM156A Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM156A Gene COMPARTMENTS Subcellular localization image for FAM156A gene
Compartment Confidence
nucleus 4

Gene Ontology (GO) - Cellular Components for FAM156A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005635 nuclear envelope IDA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM156A: view

Pathways & Interactions for FAM156A Gene

SuperPathways for FAM156A Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM156A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM156A Gene

Transcripts for FAM156A Gene

Unigene Clusters for FAM156A Gene

Family with sequence similarity 156, member A:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM156A Gene

No ASD Table

Relevant External Links for FAM156A Gene

GeneLoc Exon Structure for
FAM156A
ECgene alternative splicing isoforms for
FAM156A

Expression for FAM156A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM156A Gene

Protein differential expression in normal tissues from HIPED for FAM156A Gene

This gene is overexpressed in Placenta (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM156A Gene



Protein tissue co-expression partners for FAM156A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM156A Gene:

FAM156A

SOURCE GeneReport for Unigene cluster for FAM156A Gene:

Hs.6451
genes like me logo Genes that share expression patterns with FAM156A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM156A Gene

Orthologs for FAM156A Gene

Evolution for FAM156A Gene

ENSEMBL:
Gene Tree for FAM156A (if available)
TreeFam:
Gene Tree for FAM156A (if available)

No data available for Orthologs for FAM156A Gene

Paralogs for FAM156A Gene

Paralogs for FAM156A Gene

(1) SIMAP similar genes for FAM156A Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for FAM156A Gene

genes like me logo Genes that share paralogs with FAM156A: view

Variants for FAM156A Gene

Sequence variations from dbSNP and Humsavar for FAM156A Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs10547016 -- 52,990,799(+) GAAAA(-/AA)GAAAA intron-variant
rs10666405 -- 52,990,798(+) GAAAA(-/AGC/GA/GAA/GAAAAGA)AAGAA intron-variant
rs111299802 -- 52,973,086(+) AGGGA(G/T)AGCAT intron-variant
rs111330851 -- 52,992,502(+) CTGTG(C/T)GGTCC intron-variant
rs111510323 -- 52,972,221(+) AAGCC(A/C)AAATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM156A Gene

Variant ID Type Subtype PubMed ID
esv2740175 CNV deletion 23290073
esv3576878 CNV gain 25503493
nsv1125094 CNV duplication 24896259
nsv1151012 CNV duplication 26484159
nsv435891 CNV deletion 17901297
nsv475397 CNV novel sequence insertion 20440878
nsv499358 OTHER inversion 21111241
nsv7447 OTHER inversion 18451855

Relevant External Links for FAM156A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM156A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM156A Gene

Disorders for FAM156A Gene

Relevant External Links for FAM156A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM156A

No disorders were found for FAM156A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM156A Gene

Publications for FAM156A Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64

Products for FAM156A Gene

Sources for FAM156A Gene

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