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Aliases for FAM156A Gene

Aliases for FAM156A Gene

  • Family With Sequence Similarity 156 Member A 2 3 5
  • Transmembrane Protein 29/29B 3 4
  • Transmembrane Protein 29 2 3
  • TMEM29 3 4
  • Family With Sequence Similarity 156, Member A 2
  • Protein FAM156A/FAM156B 3
  • Protein FAM156A 3
  • FAM156A FAM156B 4
  • PRO0659 3
  • TMEM29B 4

External Ids for FAM156A Gene

Previous HGNC Symbols for FAM156A Gene

  • TMEM29

Previous GeneCards Identifiers for FAM156A Gene

  • GC0XM050038

Summaries for FAM156A Gene

GeneCards Summary for FAM156A Gene

FAM156A (Family With Sequence Similarity 156 Member A) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include methylated histone binding. An important paralog of this gene is FAM156B.

Gene Wiki entry for FAM156A Gene

Additional gene information for FAM156A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM156A Gene

Genomics for FAM156A Gene

GeneHancer (GH) Regulatory Elements for FAM156A Gene

Promoters and enhancers for FAM156A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI052994 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 582.7 +0.1 98 2.6 PKNOX1 ATF1 ARNT ARID4B SIN3A FEZF1 BRCA1 YY1 ZNF213 ZNF207 FAM156A SMC1A KDM5C FAM156B ENSG00000233250 ACTG1P10 KDM5C-IT1 HUWE1 GC0XP052962
GH0XI052957 Promoter/Enhancer 1.5 EPDnew Ensembl dbSUPER 550.3 +37.0 36971 2.6 ZNF830 ATF1 POLR2A GMEB1 PHF20 GABPB1 FAM156A FAM156B GC0XP052962 GC0XP052932
GH0XI052979 Promoter 0.6 EPDnew 550.4 +17.3 17255 0.1 POLR2A FAM156A GC0XP052962
GH0XI052919 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 32.7 +74.3 74347 2.6 HDGF PKNOX1 SMAD1 ARID4B SIN3A IRF4 ZNF213 ZNF143 ZNF207 SP3 FAM156A KANTR FAM156B ACTG1P10 TSPYL2 KDM5C GC0XP052932
GH0XI052923 Enhancer 1 Ensembl ENCODE dbSUPER 33.2 +71.6 71608 1.3 EBF1 JUND IKZF1 TARDBP NBN NFE2 RUNX3 BCLAF1 SPI1 FAM156A GC0XP052932 FAM156B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM156A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM156A gene promoter:

Genomic Locations for FAM156A Gene

Genomic Locations for FAM156A Gene
chrX:52,926,402-52,995,472
(GRCh38/hg38)
Size:
69,071 bases
Orientation:
Minus strand
chrX:52,976,462-53,024,651
(GRCh37/hg19)

Genomic View for FAM156A Gene

Genes around FAM156A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM156A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM156A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM156A Gene

Proteins for FAM156A Gene

  • Protein details for FAM156A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NDB6-FA156_HUMAN
    Recommended name:
    Protein FAM156A/FAM156B
    Protein Accession:
    Q8NDB6
    Secondary Accessions:
    • B3KQ92
    • Q5JPL2
    • Q5JPL3
    • Q5JPL4
    • Q5JPL5
    • Q5JPL6
    • Q68D17
    • Q6NVY3
    • Q9UI49

    Protein attributes for FAM156A Gene

    Size:
    213 amino acids
    Molecular mass:
    24412 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAF24055.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH00867.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for FAM156A Gene

Post-translational modifications for FAM156A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM156A Gene

Domains & Families for FAM156A Gene

Gene Families for FAM156A Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for FAM156A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM156A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM156A: view

No data available for UniProtKB/Swiss-Prot for FAM156A Gene

Function for FAM156A Gene

Gene Ontology (GO) - Molecular Function for FAM156A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0035064 methylated histone binding IEA --
genes like me logo Genes that share ontologies with FAM156A: view

Phenotypes for FAM156A Gene

GenomeRNAi human phenotypes for FAM156A:
genes like me logo Genes that share phenotypes with FAM156A: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM156A Gene

Localization for FAM156A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM156A Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM156A gene
Compartment Confidence
nucleus 4

Gene Ontology (GO) - Cellular Components for FAM156A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005635 nuclear envelope IDA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM156A: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for FAM156A Gene

Pathways & Interactions for FAM156A Gene

SuperPathways for FAM156A Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM156A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM156A Gene

Drugs & Compounds for FAM156A Gene

No Compound Related Data Available

Transcripts for FAM156A Gene

Unigene Clusters for FAM156A Gene

Family with sequence similarity 156, member A:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM156A Gene

No ASD Table

Relevant External Links for FAM156A Gene

GeneLoc Exon Structure for
FAM156A
ECgene alternative splicing isoforms for
FAM156A

Expression for FAM156A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM156A Gene

Protein differential expression in normal tissues from HIPED for FAM156A Gene

This gene is overexpressed in Placenta (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM156A Gene



Protein tissue co-expression partners for FAM156A Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FAM156A Gene:

FAM156A

SOURCE GeneReport for Unigene cluster for FAM156A Gene:

Hs.6451

Evidence on tissue expression from TISSUES for FAM156A Gene

  • Nervous system(4.9)
  • Lymph node(4.2)
genes like me logo Genes that share expression patterns with FAM156A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM156A Gene

Orthologs for FAM156A Gene

Evolution for FAM156A Gene

ENSEMBL:
Gene Tree for FAM156A (if available)
TreeFam:
Gene Tree for FAM156A (if available)

No data available for Orthologs for FAM156A Gene

Paralogs for FAM156A Gene

Paralogs for FAM156A Gene

(1) SIMAP similar genes for FAM156A Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for FAM156A Gene

genes like me logo Genes that share paralogs with FAM156A: view

Variants for FAM156A Gene

Sequence variations from dbSNP and Humsavar for FAM156A Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000852985 -- 52,983,576(-) A/G genic_upstream_transcript_variant, intron_variant
rs1001036997 -- 52,992,968(-) G/A genic_upstream_transcript_variant, intron_variant
rs1001367803 -- 52,977,109(-) T/C genic_upstream_transcript_variant, intron_variant
rs1001448265 -- 52,993,661(-) C/T genic_upstream_transcript_variant, intron_variant
rs1001526281 -- 52,988,562(-) A/T genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FAM156A Gene

Variant ID Type Subtype PubMed ID
esv2740175 CNV deletion 23290073
esv3576878 CNV gain 25503493
nsv1125094 CNV duplication 24896259
nsv1151012 CNV duplication 26484159
nsv435891 CNV deletion 17901297
nsv475397 CNV novel sequence insertion 20440878
nsv499358 OTHER inversion 21111241
nsv7447 OTHER inversion 18451855

Additional Variant Information for FAM156A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM156A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM156A Gene

Disorders for FAM156A Gene

Additional Disease Information for FAM156A

No disorders were found for FAM156A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM156A Gene

Publications for FAM156A Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58

Products for FAM156A Gene

Sources for FAM156A Gene

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