Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM155A-IT1 Gene

Subcategory (RNA class) for FAM155A-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM155A-IT1 Gene

  • FAM155A Intronic Transcript 1 2 3 5
  • FAM155A Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for FAM155A-IT1 Gene

Previous GeneCards Identifiers for FAM155A-IT1 Gene

  • GC00U933017
  • GC13M108441

Summaries for FAM155A-IT1 Gene

GeneCards Summary for FAM155A-IT1 Gene

FAM155A-IT1 (FAM155A Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM155A-IT1 Gene

Genomics for FAM155A-IT1 Gene

Regulatory Elements for FAM155A-IT1 Gene

Enhancers for FAM155A-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F107834 0.5 ENCODE 0.8 -0.1 -85 1.4 JUND SMARCA4 BHLHE40 SPI1 FAM155A-IT1 FAM155A
GH13F107865 1 FANTOM5 ENCODE 0.3 -31.7 -31658 2.8 CTCF SUZ12 RAD21 HIC1 ZFHX2 GLIS2 ZNF366 POLR2A SMC3 PRDM10 FAM155A LIG4 FAM155A-IT1
GH13F107842 0.5 ENCODE 0.4 -7.5 -7482 0.4 GATA3 JUND FOS FAM155A FAM155A-IT1
GH13F107847 0.5 ENCODE 0.4 -12.2 -12161 0.4 SMARCA4 POLR2A BHLHE40 TEAD4 FAM155A-IT1 FAM155A
GH13F107817 0.4 ENCODE 0.3 +17.7 17651 0.2 POU5F1 FAM155A-IT1 GC13M107782
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM155A-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM155A-IT1 Gene

Chromosome:
13
Start:
107,787,361 bp from pter
End:
107,835,458 bp from pter
Size:
48,098 bases
Orientation:
Minus strand

Genomic View for FAM155A-IT1 Gene

Genes around FAM155A-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM155A-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM155A-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM155A-IT1 Gene

Proteins for FAM155A-IT1 Gene

Post-translational modifications for FAM155A-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM155A-IT1 Gene

Domains & Families for FAM155A-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM155A-IT1 Gene

Function for FAM155A-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM155A-IT1 Gene

Localization for FAM155A-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM155A-IT1 Gene

Pathways & Interactions for FAM155A-IT1 Gene

SuperPathways for FAM155A-IT1 Gene

No Data Available

Interacting Proteins for FAM155A-IT1 Gene

Gene Ontology (GO) - Biological Process for FAM155A-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM155A-IT1 Gene

Transcripts for FAM155A-IT1 Gene

mRNA/cDNA for FAM155A-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM155A-IT1 Gene

No ASD Table

Relevant External Links for FAM155A-IT1 Gene

GeneLoc Exon Structure for
FAM155A-IT1
ECgene alternative splicing isoforms for
FAM155A-IT1

Expression for FAM155A-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM155A-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM155A-IT1 Gene

This gene is overexpressed in Testis (x29.0) and Pituitary (x5.8).
genes like me logo Genes that share expression patterns with FAM155A-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM155A-IT1 Gene

Orthologs for FAM155A-IT1 Gene

Evolution for FAM155A-IT1 Gene

ENSEMBL:
Gene Tree for FAM155A-IT1 (if available)
TreeFam:
Gene Tree for FAM155A-IT1 (if available)

No data available for Orthologs for FAM155A-IT1 Gene

Paralogs for FAM155A-IT1 Gene

No data available for Paralogs for FAM155A-IT1 Gene

Variants for FAM155A-IT1 Gene

Sequence variations from dbSNP and Humsavar for FAM155A-IT1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1014207 -- 107,797,776(-) TTATT(C/G)TTTTT intron-variant
rs10161844 -- 107,818,405(+) AGACA(C/T)TGGAG intron-variant
rs10467234 -- 107,792,283(+) CATGG(A/G)TTATT intron-variant
rs10508189 -- 107,790,448(+) TTGTC(A/T)AATTA intron-variant
rs10508190 -- 107,792,179(+) TGTCT(C/T)TCTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM155A-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv563014 CNV loss 21841781
nsv563013 CNV gain 21841781
nsv456110 CNV gain 19166990
nsv1042945 CNV loss 25217958
esv998714 CNV deletion 20482838
esv3892444 CNV loss 25118596
esv3633493 CNV loss 21293372
esv3580880 CNV loss 25503493
esv3423936 CNV insertion 20981092
esv2759965 CNV loss 17122850
esv2667287 CNV deletion 23128226

Relevant External Links for FAM155A-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM155A-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM155A-IT1 Gene

Disorders for FAM155A-IT1 Gene

Relevant External Links for FAM155A-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM155A-IT1

No disorders were found for FAM155A-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM155A-IT1 Gene

Publications for FAM155A-IT1 Gene

  1. Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study. (PMID: 25208829) Anderson D. … Blackwell J.M. (Genes Immun. 2014) 3 64
  2. A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis. (PMID: 23509962) Greliche N. … TrAcgouAt D.A. (BMC Med. Genet. 2013) 3 64
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64

Products for FAM155A-IT1 Gene

Sources for FAM155A-IT1 Gene

Content
Loading form....