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Aliases for FAM153C Gene

Aliases for FAM153C Gene

  • Family With Sequence Similarity 153, Member C 2
  • Family With Sequence Similarity 153, Member C, Pseudogene 3
  • NY-REN-7-Like 3

External Ids for FAM153C Gene

Summaries for FAM153C Gene

GeneCards Summary for FAM153C Gene

FAM153C (Family With Sequence Similarity 153, Member C) is a Pseudogene. An important paralog of this gene is FAM153B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM153C Gene

Genomics for FAM153C Gene

Genomic Location for FAM153C Gene

Start:
178,006,405 bp from pter
End:
178,055,559 bp from pter
Size:
49,155 bases
Orientation:
Plus strand

Genomic View for FAM153C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM153C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM153C Gene

Regulatory Elements for FAM153C Gene

Proteins for FAM153C Gene

  • Protein details for FAM153C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q494X1-F153C_HUMAN
    Recommended name:
    Protein FAM153C
    Protein Accession:
    Q494X1
    Secondary Accessions:
    • A4IF33
    • B2RUV5
    • B7ZW12

    Protein attributes for FAM153C Gene

    Size:
    144 amino acids
    Molecular mass:
    16640 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM153C Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM153C Gene

Proteomics data for FAM153C Gene at MOPED

Post-translational modifications for FAM153C Gene

No Post-translational modifications

Other Protein References for FAM153C Gene

No data available for DME Specific Peptides for FAM153C Gene

Domains for FAM153C Gene

Protein Domains for FAM153C Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

F153C_HUMAN
Family:
  • Belongs to the FAM153 family.:
    • Q494X1
genes like me logo Genes that share domains with FAM153C: view

No data available for Gene Families for FAM153C Gene

Function for FAM153C Gene

Gene Ontology (GO) - Molecular Function for FAM153C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with FAM153C: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM153C Gene

Localization for FAM153C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM153C Gene COMPARTMENTS Subcellular localization image for FAM153C gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for FAM153C Gene

Pathways for FAM153C Gene

SuperPathways for FAM153C Gene

No Data Available

Interacting Proteins for FAM153C Gene

Selected Interacting proteins: Q494X1-F153C_HUMAN for FAM153C Gene via UniProtKB

Symbol External ID(s) Details
-

Gene Ontology (GO) - Biological Process for FAM153C Gene

None

No data available for Pathways by source for FAM153C Gene

Transcripts for FAM153C Gene

mRNA/cDNA for FAM153C Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM153C Gene

Family with sequence similarity 153, member C, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM153C Gene

No ASD Table

Relevant External Links for FAM153C Gene

GeneLoc Exon Structure for
FAM153C
ECgene alternative splicing isoforms for
FAM153C

Expression for FAM153C Gene

mRNA expression in normal human tissues for FAM153C Gene

mRNA differential expression in normal tissues according to GTEx for FAM153C Gene

This gene is overexpressed in Brain - Cerebellum (8.7), Brain - Cerebellar Hemisphere (8.0), Testis (5.2), and Pituitary (5.0).

SOURCE GeneReport for Unigene cluster for FAM153C Gene Hs.652193

genes like me logo Genes that share expressions with FAM153C: view

Orthologs for FAM153C Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FAM153C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 35 (a)
ManyToMany
-- 37
  • 97 (a)
ManyToMany
Species with no ortholog for FAM153C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM153C Gene

ENSEMBL:
Gene Tree for FAM153C (if available)
TreeFam:
Gene Tree for FAM153C (if available)

Paralogs for FAM153C Gene

Paralogs for FAM153C Gene

Selected SIMAP similar genes for FAM153C Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with FAM153C: view

Variants for FAM153C Gene

Sequence variations from dbSNP and Humsavar for FAM153C Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs2173662 -- 178,040,917(-) TCCTA(C/T)GTATT intron-variant
rs4246816 -- 178,011,055(+) TTTTT(C/G)AGACA intron-variant
rs4389708 -- 178,014,188(+) GTCTG(A/G)TTCCT intron-variant
rs4412128 -- 178,040,526(+) TCAGG(C/T)GTGTT intron-variant
rs4487508 -- 178,014,208(+) TGGCT(G/T)CTGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM153C Gene

Variant ID Type Subtype PubMed ID
nsv883184 CNV Gain 21882294
nsv509105 CNV Insertion 20534489
nsv883186 CNV Gain 21882294
nsv883188 CNV Gain 21882294

Relevant External Links for FAM153C Gene

HapMap Linkage Disequilibrium report
FAM153C

Disorders for FAM153C Gene

No disorders were found for FAM153C Gene.

No data available for UniProtKB/Swiss-Prot for FAM153C Gene

Publications for FAM153C Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for FAM153C Gene

Sources for FAM153C Gene

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