Aliases for FAM153C Gene
Aliases for FAM153C Gene
External Ids for FAM153C Gene
- HGNC: 33936
- Entrez Gene: 653316
- Ensembl: ENSG00000204677
- UniProtKB: Q494X1
Previous GeneCards Identifiers for FAM153C Gene
- GC05P177369
- GC05P177435
- GC05P172169
- GC05P177437
- GC05P177440
- GC05P177445
- GC05P177448
- GC05P177451
Summaries for FAM153C Gene
GeneCards Summary for FAM153C Gene
FAM153C (Family With Sequence Similarity 153 Member C) is a Pseudogene. An important paralog of this gene is FAM153B.
No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM153C Gene
Genomics for FAM153C Gene
Regulatory Elements for FAM153C Gene
Enhancers for FAM153C Gene
| GeneHancer Identifier | Score | Enhancer Sources | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Other Gene Targets for Enhancer |
|---|
Enhancers around FAM153C on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for FAM153C Gene
- Chromosome:
- 5
- Start:
- 178,006,405 bp from pter
- End:
- 178,055,559 bp from pter
- Size:
- 49,155 bases
- Orientation:
- Plus strand
Genomic View for FAM153C Gene
Genes around FAM153C on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q35.3 by Ensembl
- 5q35.3 by Entrez Gene
- 5q35.3 by HGNC
FAM153C Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FAM153C Gene
Proteins for FAM153C Gene
-
Protein details for FAM153C Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q494X1-F153C_HUMAN
- Recommended name:
- Protein FAM153C
- Protein Accession:
- Q494X1
- A4IF33
- B2RUV5
- B7ZW12
Protein attributes for FAM153C Gene
- Size:
- 144 amino acids
- Molecular mass:
- 16640 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for FAM153C Gene
Other Protein References for FAM153C Gene
- ENSEMBL proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for FAM153C
- Abcam antibodies for FAM153C
- Search GeneTex for Antibodies for FAM153C
-
Santa Cruz Biotechnology (SCBT) Antibodies for FAM153C
Protein Products
-
OriGene Purified Proteins for FAM153C
- Search Origene for MassSpec and Protein Over-expression Lysates for FAM153C
- Origene Custom Protein Services for FAM153C
- Search GeneTex for Proteins for FAM153C
Assay Products
No data available for DME Specific Peptides for FAM153C Gene
Domains & Families for FAM153C Gene
Suggested Antigen Peptide Sequences for FAM153C Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q494X1- Family:
-
- Belongs to the FAM153 family.
No data available for Gene Families for FAM153C Gene
Function for FAM153C Gene
Phenotypes for FAM153C Gene
- GenomeRNAi human phenotypes for FAM153C:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for FAM153C
CRISPR Products
-
OriGene CRISPR knockouts for FAM153C
miRNA Products
- Search ViGene Biosciences for FAM153C
Inhibitory RNA Products
- Origene siRNA, shRNA, and RNAi products in human, mouse, rat for FAM153C
- Browse OriGene Inhibitory RNA Products For FAM153C
- Search ViGene Biosciences for FAM153C
Clone Products
- OriGene clones in human for FAM153C
- OriGene ORF clones in human for FAM153C
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- GenScript: Custom all cDNA clones Services for FAM153C
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Cell Line Products
- Search ViGene Biosciences for FAM153C
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM153C Gene
Localization for FAM153C Gene
| Compartment | Confidence |
|---|---|
| cytosol | 2 |
| nucleus | 2 |
| extracellular | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM153C Gene
Pathways & Interactions for FAM153C Gene
More details on SuperPathways for FAM153C
No Data Available
Interacting Proteins for FAM153C Gene
| Symbol | External ID(s) | Details |
|---|---|---|
| - |
No data available for Pathways by source and SIGNOR curated interactions for FAM153C Gene
Transcripts for FAM153C Gene
mRNA/cDNA for FAM153C Gene
- (1) REFSEQ mRNAs :
- (6) Additional mRNA sequences :
- (13) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FAM153C Gene
CRISPR Products
-
OriGene CRISPR knockouts for FAM153C
miRNA Products
- Search ViGene Biosciences for FAM153C
Inhibitory RNA Products
- Origene siRNA, shRNA, and RNAi products in human, mouse, rat for FAM153C
- Browse OriGene Inhibitory RNA Products For FAM153C
- Search ViGene Biosciences for FAM153C
Clone Products
- OriGene clones in human for FAM153C
- OriGene ORF clones in human for FAM153C
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- GenScript: Custom all cDNA clones Services for FAM153C
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Flow Cytometry Products
Expression for FAM153C Gene
mRNA differential expression in normal tissues according to GTEx for FAM153C Gene
This gene is overexpressed in Brain - Cerebellum (x8.7), Brain - Cerebellar Hemisphere (x8.0), Testis (x5.2), and Pituitary (x5.0).
SOURCE GeneReport for Unigene cluster for FAM153C Gene Hs.652193
Primer Products
-
OriGene qPCR primer pairs for FAM153C
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for FAM153C Gene
Orthologs for FAM153C Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | -- 36 |
|
ManyToMany | |
| -- 36 |
|
ManyToMany |
- Species with no ortholog for FAM153C:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for FAM153C Gene
(2) SIMAP similar genes for FAM153C Gene using alignment to 4 proteins:
Variants for FAM153C Gene
| SNP ID | Clin | Chr 05 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs6601201 | -- | 178,037,447(+) | AACAT(A/G)GAGAA | intron-variant | |
| rs6860804 | -- | 178,039,529(+) | TGAAT(C/G)AGGAC | intron-variant | |
| rs6866401 | -- | 178,042,411(+) | gtaat(C/T)ccagc | intron-variant | |
| rs6866556 | -- | 178,042,496(+) | ccatc(G/T)ctcct | intron-variant | |
| rs4077782 | -- | 178,044,164(-) | CATAC(G/T)GGAAT | intron-variant |
Gene Damage Index Score:
0.07;
1.61% of all genes are more intolerant (likely to be disease-causing)
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for FAM153C Gene
Disorders for FAM153C Gene
Relevant External Links for FAM153C
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FAM153C
No disorders were found for FAM153C Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM153C Gene
Publications for FAM153C Gene
- A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 67
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
Products for FAM153C Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Custom Antibody ServicesOriGene Antibodies for FAM153C
- Browse OriGene ELISA Kits
- Custom Assay Services
- OriGene Purified Proteins for FAM153C
- Search Origene for MassSpec and Protein Over-expression Lysates for FAM153C
- Origene Custom Protein Services for FAM153C
- Origene siRNA, shRNA, and RNAi products in human, mouse, rat for FAM153C
- Browse OriGene Inhibitory RNA Products For FAM153C
- OriGene qPCR primer pairs for FAM153C
- OriGene CRISPR knockouts for FAM153C
- OriGene clones in human for FAM153C
- OriGene ORF clones in human for FAM153C
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- GenScript: Custom all cDNA clones Services for FAM153C
- GenScript Custom Purified and Recombinant Proteins Services for FAM153C
- GenScript Custom Assay Services for FAM153C
- GenScript Custom overexpressing Cell Line Services for FAM153C
- Browse GenScript CRISPR for FAM153C
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for FAM153C
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Search ViGene Biosciences for FAM153C
- Search ViGene Biosciences for FAM153C
- Search ViGene Biosciences for FAM153C
- Search ViGene Biosciences for FAM153C
- Santa Cruz Biotechnology (SCBT) Antibodies for FAM153C
- Search Santa Cruz Biotechnology (SCBT) for FAM153C siRNA/shRNA
- Browse Santa Cruz Biotechnology (SCBT) for FAM153C CRISPR
Sources for FAM153C Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) I2D
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) RNAdb
- (30) ASD
- (31) ECgene
- (32) GeneAnnot
- (33) SAGE
- (34) SOURCE
- (35) HomoloGene
- (36) PanEnsembl
- (37) euGenes
- (38) SGD
- (39) FlyBase
- (40) WormBase
- (41) Pseudogene
- (42) DGV
- (43) dbSNP
- (44) HapMap
- (45) GenAtlas
- (46) GeneTests
- (47) HGMD
- (48) GAD
- (49) LSDB
- (50) BGMUT
- (51) HuGE
- (52) eBioscience
- (53) Atlas
- (54) Cell Signaling Technology
- (55) GenBank
- (56) H-invDB
- (57) HORDE
- (58) HUGE
- (59) IMGT
- (60) Leiden
- (61) MILLIPORE
- (62) miRBase
- (63) DME
- (64) Nature
- (65) NCBI
- (66) OriGene
- (67) PubMed
- (68) R&D Systems
- (69) Salk
- (70) TGDB
- (71) Tufts
- (72) YEDA
- (73) CROW21
- (74) Tocris
- (75) Abcam
- (76) Novus
- (77) ProSpec
- (78) Sino Biological
- (79) GenScript
- (80) Qiagen
- (81) Cloud-Clone Corp.
- (82) Enzo Life Sciences
- (83) OCA
- (84) Proteopedia
- (85) MOPED
- (86) SPIRE
- (87) neXtProt
- (88) Reactome
- (89) GeneGo (Thomson Reuters)
- (90) fRNAdb
- (91) DISEASES
- (92) SIMAP
- (93) GenomeRNAi
- (94) LifeMap
- (95) miRTarBase
- (96) MalaCards
- (97) Invitrogen
- (98) BitterDB
- (99) Vector BioLabs
- (100) ESI-BIO
- (101) RefSeq
- (102) BioSystems
- (103) MaxQB
- (104) IUPHAR
- (105) BioGPS
- (106) Illumina
- (107) COMPARTMENTS
- (108) HOMER
- (109) PaxDb
- (110) ApexBio
- (111) Addgene
- (112) Advanced Cell Diagnostics
- (113) antibodies-online
- (114) CYP
- (115) NONCODE
- (116) SwitchGear Genomics
- (117) TreeFam
- (118) PathCards
- (119) GeneReviews
- (120) GeneTex
- (121) Taconic Biosciences
- (122) GTEx
- (123) ProteomicsDB
- (124) SCBT
- (125) DGIdb
- (126) ClinicalTrials
- (127) FDA Approved Drugs
- (128) RVIS
- (129) SIGNOR
- (130) diseasecard
- (131) NIH Rare Diseases
- (132) Orphanet
- (133) UMLS
- (134) GTR
- (135) Disease Ontology
- (136) Genetics Home Reference
- (137) MeSH
- (138) MedlinePlus
- (139) CDC
- (140) NINDS
- (141) NCBI Bookshelf
- (142) ClinVar
- (143) Gene Damage Index
- (144) ViGene Biosciences
- (145) HPO
- (146) UDN
- (147) VISTA
- (148) FANTOM5
- (149) ENCODE
- (150) ProSci
- (151) Horizon