FAM153C Gene
protein-coding GIFtS: 30
GCID: GC05P177448
|
|
Family With Sequence Similarity 153, Member C
| |
Aliases
for FAM153C gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
10fRNAdb,
12H-InvDB,
13NCBI,
14NONCODE,
and/or 15RNAdb)
About This Section
|
| Aliases |
|---|
| Family With Sequence Similarity 153, Member C1 | | NY-REN-7-like2 | | Family With Sequence Similarity 153, Member C, Pseudogene2 |
Export aliases for FAM153C gene to outside databasesPrevious GC identifers: GC05P177369 GC05P177435 GC05P172169 GC05P177437 GC05P177440 GC05P177445 |
Summaries
for FAM153C gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
GeneCards Summary for FAM153C Gene: 
FAM153C (family with sequence similarity 153, member C) is a protein-coding gene. An important paralog of this gene is FAM153B.
|
Genomic Views
for FAM153C gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 73),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000005.9 NC_018916.2 NT_023133.13
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the FAM153C gene promoter:
Pax-5 Tal-1 p53 SREBP-1c STAT5A YY1 Gfi-1 SREBP-1b E47 SREBP-1a
Other transcription factors
Search SABiosciences Chromatin IP Primers for FAM153C
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM153C |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 5q35.3 Ensembl cytogenetic band: 5q35.3 HGNC cytogenetic band: 5q35.3FAM153C Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05P177448: view genomic region
(about GC identifiers)
Start:
|
177,433,406 bp from pter |
End:
|
177,482,560 bp from pter |
Size:
|
49,155 bases |
Orientation:
|
plus strand |
|
Proteins
for FAM153C gene
(According to
UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE 1MOPED,
2PaxDb, and 3MAXQB
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Cloud-Clone Corp.,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Cloud-Clone Corp.,
Ontologies according to Gene
Ontology Consortium 01 Oct 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
LSBio,
Abcam, and/or
Cloud-Clone Corp.)
About This Section
|
UniProtKB/Swiss-Prot: F153C_HUMAN, Q494X1 (See
protein sequence)Recommended Name: Protein FAM153C Size: 144 amino acids; 16640 Da
Secondary accessions: A4IF33 B2RUV5 B7ZW12Alternative splicing: 2 isoforms: Q494X1-1 Q494X1-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for FAM153C: NX_Q494X1
Explore proteomics data for FAM153C at MOPED
FAM153C Protein expression data from MOPED1, PaxDb2 and
MAXQB3 : About this image 
ENSEMBL proteins: ENSP00000423403 ENSP00000424623 ENSP00000381177 ENSP00000422293 ENSP00000426621
Human Recombinant Protein Products for FAM153C:
FAM153C Antibody Products:
Assay Products for FAM153C: |
Protein
Domains /
Families
for FAM153C gene(According to HGNC, IUPHAR, InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| 1 InterPro protein domain:Graphical View of Domain Structure for InterPro Entry Q494X1 ProtoNet protein and cluster: Q494X1 UniProtKB/Swiss-Prot: F153C_HUMAN, Q494X1Similarity: Belongs to the FAM153 family
FAM153C for domains About GeneDecksing
|
Function
for FAM153C gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Oct 2013 via
Entrez Gene.)
About This Section
|
Animal Models:
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM153C |
|
Pathways & Interactions
for FAM153C gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Sino Biological,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Oct 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FAM153C
|
Drugs & Compounds
for FAM153C gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
IUPHAR,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FAM153C (F153C)
Search CenterWatch for drugs/clinical trials and news about FAM153C / F153C
|
Transcripts
for FAM153C gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
Conferences by KenesGroup,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for FAM153C gene: NM_001079527.1 Unigene Cluster for FAM153C: Family with sequence similarity 153, member C, pseudogene Hs.652193 [show with all ESTs]Unigene Representative Sequence: BC10133912 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000504530 ENST00000505582 ENST00000507848(uc011dge.2) ENST00000508839
ENST00000505394 ENST00000398106 ENST00000511856 ENST00000511189 ENST00000511511
ENST00000511819 ENST00000506096 ENST00000515878
Primer
Products: |  | OriGene qSTAR qPCR primer pairs in human, mouse for FAM153C
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat FAM153C | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM153C | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM153C |
Additional mRNA sequence: AK294762.1 BC101339.2 BC101340.2 BC131737.1 BC171810.1 NR_038353.1 7 DOTS entries: DT.120888808 DT.87009802 DT.92015534 DT.99966427 DT.95257498 DT.100748401 DT.120888805
GeneLoc Exon Structure
|
Expression
for FAM153C gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| FAM153C expression in normal human tissues
(normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AATCCCCCTG
About this image
See FAM153C Protein Expression from SPIRE MOPED and PaxDB
SOURCE GeneReport for Unigene cluster: Hs.652193
SABiosciences Custom PCR Arrays for FAM153C
Primer
Products: | | OriGene qSTAR qPCR primer pairs in human, mouse for FAM153C
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat FAM153C | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM153C | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM153C | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM153C |
Orthologs
for FAM153C gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of human and chimp.
Orthologs for FAM153C gene from 1 species (see representative species ) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chimpanzee
(Pan troglodytes) |
Mammalia |
LOC7353616 |
-- |
35(a) |
1 → many |
5(177153557-177195644) |
ENSEMBL Gene Tree for FAM153C (if available)
TreeFam Gene Tree for FAM153C (if available) |
Paralogs
for FAM153C gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for FAM153C gene
- FAM153B2 FAM153A2
2 SIMAP similar genes for FAM153C using alignment to 4 protein entries: F153C_HUMAN (see all proteins):FAM153A FAM153B
FAM153C for paralogs About GeneDecksing
|
Genomic Variants
for FAM153C gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
4UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 5 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for FAM153C (177433406 - 177482560 bp)
Structural Variations
Database of Genomic Variants (DGV) 4 variations for FAM153C: About this table
| | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for FAM153C gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Conferences by KenesGroup,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for FAM153C gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for FAM153C gene integrated from 9 sources:
(articles sorted by number of sources associating them with FAM153C) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for FAM153C gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing FAM153C gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing FAM153C gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FAM153C gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FAM153C | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for FAM153C gene:
Search GeneIP for patents involving FAM153C
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FAM153C gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 |
| | | | |
 |
 |
|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FAM153C | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FAM153C | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FAM153C | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FAM153C | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FAM153C | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FAM153C |
| |
 |  |  |  | |
| | | |  |  |  |  | | | | |
 |
 |
 |
 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM153C |
|  |  |  |  | | | | Search ThermoFisher Antibodies for FAM153C |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FAM153C |
| |  |  | | |
|
|
|
