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Aliases for FAM153A Gene

Aliases for FAM153A Gene

  • Family With Sequence Similarity 153, Member A 2 3
  • Renal Carcinoma Antigen NY-REN-7 3 4
  • NY REN 7 Antigen 2 3
  • Protein FAM153A 3
  • NY-REN-7 3
  • KIAA0752 4

External Ids for FAM153A Gene

Previous GeneCards Identifiers for FAM153A Gene

  • GC05M177071
  • GC05P172197
  • GC05M177134

Summaries for FAM153A Gene

GeneCards Summary for FAM153A Gene

FAM153A (Family With Sequence Similarity 153, Member A) is a Protein Coding gene. Among its related pathways are Disease and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. An important paralog of this gene is FAM153B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM153A Gene

Genomics for FAM153A Gene

Regulatory Elements for FAM153A Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FAM153A Gene

Start:
177,707,981 bp from pter
End:
177,783,398 bp from pter
Size:
75,418 bases
Orientation:
Minus strand

Genomic View for FAM153A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM153A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM153A Gene

Proteins for FAM153A Gene

  • Protein details for FAM153A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UHL3-F153A_HUMAN
    Recommended name:
    Protein FAM153A
    Protein Accession:
    Q9UHL3
    Secondary Accessions:
    • A8K0F3
    • O94852

    Protein attributes for FAM153A Gene

    Size:
    310 amino acids
    Molecular mass:
    34712 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA34472.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for FAM153A Gene

Proteomics data for FAM153A Gene at MOPED

Post-translational modifications for FAM153A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM153A Gene

Domains for FAM153A Gene

Protein Domains for FAM153A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM153A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UHL3

UniProtKB/Swiss-Prot:

F153A_HUMAN :
  • Q9UHL3
Family:
  • Belongs to the FAM153 family.
genes like me logo Genes that share domains with FAM153A: view

No data available for Gene Families for FAM153A Gene

Function for FAM153A Gene

Phenotypes for FAM153A Gene

GenomeRNAi human phenotypes for FAM153A:
genes like me logo Genes that share phenotypes with FAM153A: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM153A Gene

Localization for FAM153A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM153A Gene COMPARTMENTS Subcellular localization image for FAM153A gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM153A Gene

Pathways for FAM153A Gene

genes like me logo Genes that share pathways with FAM153A: view

Pathways by source for FAM153A Gene

Interacting Proteins for FAM153A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000353887%0d%0a9606.ENSP00000223127%0d%0a
Selected Interacting proteins: ENSP00000353887 Q9UHL3-F153A_HUMAN for FAM153A Gene via STRING I2D

Gene Ontology (GO) - Biological Process for FAM153A Gene

None

Transcripts for FAM153A Gene

mRNA/cDNA for FAM153A Gene

Unigene Clusters for FAM153A Gene

Family with sequence similarity 153, member A:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM153A

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for FAM153A
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM153A Gene

No ASD Table

Relevant External Links for FAM153A Gene

GeneLoc Exon Structure for
FAM153A
ECgene alternative splicing isoforms for
FAM153A

Expression for FAM153A Gene

mRNA expression in normal human tissues for FAM153A Gene

mRNA differential expression in normal tissues according to GTEx for FAM153A Gene

This gene is overexpressed in Brain - Cerebellum (4.8), Brain - Cerebellar Hemisphere (4.4), and Spleen (4.3).

SOURCE GeneReport for Unigene cluster for FAM153A Gene Hs.652754

genes like me logo Genes that share expressions with FAM153A: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FAM153A Gene

Orthologs for FAM153A Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for FAM153A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 75 (a)
ManyToMany
-- 36
  • 96 (a)
ManyToMany
FAM153B 35
  • 97.31 (n)
  • 93.23 (a)
Species with no ortholog for FAM153A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM153A Gene

ENSEMBL:
Gene Tree for FAM153A (if available)
TreeFam:
Gene Tree for FAM153A (if available)

Paralogs for FAM153A Gene

Paralogs for FAM153A Gene

Selected SIMAP similar genes for FAM153A Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with FAM153A: view

Variants for FAM153A Gene

Sequence variations from dbSNP and Humsavar for FAM153A Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs870107 -- 177,741,444(+) TAACT(A/G)CAAAA intron-variant
rs904690 -- 177,728,645(+) tcacc(G/T)caacc intron-variant
rs904703 -- 177,739,118(+) CGTTG(G/T)TTGGG missense, reference, intron-variant
rs904705 -- 177,740,345(+) GCTCA(C/T)GCTGA intron-variant
rs904706 -- 177,740,560(+) CATAG(C/T)AGAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM153A Gene

Variant ID Type Subtype PubMed ID
nsv883182 CNV Gain 21882294
nsv519647 CNV Loss 19592680
esv33718 CNV Gain 17666407
nsv442969 CNV CNV 18776908
nsv508389 CNV Loss 20534489
nsv5150 CNV Loss 18451855
esv25576 CNV Gain+Loss 19812545

Relevant External Links for FAM153A Gene

HapMap Linkage Disequilibrium report
FAM153A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM153A Gene

Disorders for FAM153A Gene

No disorders were found for FAM153A Gene.

No data available for UniProtKB/Swiss-Prot for FAM153A Gene

Publications for FAM153A Gene

  1. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 9872452) Nagase T. … Ohara O. (DNA Res. 1998) 2 3 4
  2. Antigens recognized by autologous antibody in patients with renal- cell carcinoma. (PMID: 10508479) Scanlan M.J. … Old L.J. (Int. J. Cancer 1999) 2 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for FAM153A Gene

Sources for FAM153A Gene

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