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Aliases for FAM13A-AS1 Gene

Subcategory (RNA class) for FAM13A-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for FAM13A-AS1 Gene

  • FAM13A Antisense RNA 1 2 3
  • FAM13A Opposite Strand (Non-Protein Coding) 2 3
  • FAM13A Antisense RNA 1 (Non-Protein Coding) 2 3
  • FAM13A1OS 3 6
  • FAM13AOS 3 6
  • Family With Sequence Similarity 13, Member A1 Opposite Strand 3
  • FAM13A1 Opposite Strand (Non-Protein Coding) 3
  • Non-Protein Coding RNA 39 2
  • NCRNA00039 3

External Ids for FAM13A-AS1 Gene

ORGUL Members for FAM13A-AS1 Gene

Previous Symbols for FAM13A-AS1 Gene

  • FAM13A1OS
  • FAM13AOS

Summaries for FAM13A-AS1 Gene

GeneCards Summary for FAM13A-AS1 Gene

FAM13A-AS1 (FAM13A Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM13A-AS1 Gene

Genomics for FAM13A-AS1 Gene

Genomic Location for FAM13A-AS1 Gene

Start:
88,709,789 bp from pter
End:
88,730,103 bp from pter
Size:
20,315 bases
Orientation:
Plus strand

Genomic View for FAM13A-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM13A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM13A-AS1 Gene

No data available for Regulatory Elements for FAM13A-AS1 Gene

Proteins for FAM13A-AS1 Gene

Post-translational modifications for FAM13A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM13A-AS1 Gene

Domains for FAM13A-AS1 Gene

Gene Families for FAM13A-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with FAM13A-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for FAM13A-AS1 Gene

Function for FAM13A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM13A-AS1 Gene

Localization for FAM13A-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for FAM13A-AS1 Gene

Pathways for FAM13A-AS1 Gene

SuperPathways for FAM13A-AS1 Gene

No Data Available

Interacting Proteins for FAM13A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM13A-AS1 Gene

None

No data available for Pathways by source for FAM13A-AS1 Gene

Transcripts for FAM13A-AS1 Gene

mRNA/cDNA for FAM13A-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM13A-AS1 Gene

FAM13A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM13A-AS1 Gene

No ASD Table

Relevant External Links for FAM13A-AS1 Gene

GeneLoc Exon Structure for
FAM13A-AS1
ECgene alternative splicing isoforms for
FAM13A-AS1

Expression for FAM13A-AS1 Gene

mRNA expression in normal human tissues for FAM13A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM13A-AS1 Gene

This gene is overexpressed in Whole Blood (4.3).

SOURCE GeneReport for Unigene cluster for FAM13A-AS1 Gene Hs.744957

genes like me logo Genes that share expressions with FAM13A-AS1: view

Orthologs for FAM13A-AS1 Gene

Evolution for FAM13A-AS1 Gene

ENSEMBL:
Gene Tree for FAM13A-AS1 (if available)
TreeFam:
Gene Tree for FAM13A-AS1 (if available)

No data available for Orthologs for FAM13A-AS1 Gene

Paralogs for FAM13A-AS1 Gene

No data available for Paralogs for FAM13A-AS1 Gene

Variants for FAM13A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM13A-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs2602121 -- 88,721,842(-) ATCTG(C/G)TCCAA intron-variant
rs2602125 -- 88,717,818(-) gaaaa(A/T)attaa intron-variant
rs2602126 -- 88,717,645(-) atgaa(A/C)acagt intron-variant
rs2602127 -- 88,715,643(-) AGAGA(C/T)GGGGT intron-variant
rs2604216 -- 88,709,834(-) CATTA(A/G)AGTGG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM13A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv461576 CNV Gain 19166990
nsv470051 CNV Gain 18288195

Relevant External Links for FAM13A-AS1 Gene

HapMap Linkage Disequilibrium report
FAM13A-AS1

Disorders for FAM13A-AS1 Gene

No disorders were found for FAM13A-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for FAM13A-AS1 Gene

Publications for FAM13A-AS1 Gene

  1. Cloning and characterization of FAM13A1--a gene near a milk protein QTL on BTA6: evidence for population-wide linkage disequilibrium in Israeli Holsteins. (PMID: 15234000) Cohen M. … Seroussi E. (Genomics 2004) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for FAM13A-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM13A-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM13A-AS1
    • Block miRNA regulation of FAM13A-AS1 using miScript Target Protectors

    Sources for FAM13A-AS1 Gene

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