Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM13A-AS1 Gene

Subcategory (RNA class) for FAM13A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM13A-AS1 Gene

  • FAM13A Antisense RNA 1 2 3 5
  • FAM13A Opposite Strand (Non-Protein Coding) 2 3
  • FAM13A Antisense RNA 1 (Non-Protein Coding) 2 3
  • Family With Sequence Similarity 13, Member A1 Opposite Strand 3
  • FAM13A1 Opposite Strand (Non-Protein Coding) 3
  • Non-Protein Coding RNA 39 2
  • NCRNA00039 3
  • FAM13A1OS 3
  • FAM13AOS 3

External Ids for FAM13A-AS1 Gene

Previous HGNC Symbols for FAM13A-AS1 Gene

  • FAM13A1OS
  • FAM13AOS

Previous GeneCards Identifiers for FAM13A-AS1 Gene

  • GC04P089631

Summaries for FAM13A-AS1 Gene

GeneCards Summary for FAM13A-AS1 Gene

FAM13A-AS1 (FAM13A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM13A-AS1 Gene

Genomics for FAM13A-AS1 Gene

Regulatory Elements for FAM13A-AS1 Gene

Enhancers for FAM13A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G088757 1.4 Ensembl ENCODE dbSUPER 16.6 +48.9 48873 2.8 FOXA2 ARID4B DMAP1 FEZF1 ZNF48 TCF12 GATA2 NFYC JUNB SMARCB1 FAM13A-AS1 HERC3 PIR43353 LOC105377327
GH04G088997 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +290.2 290227 5.5 PKNOX1 ATF1 FEZF1 GATA2 ELK1 FOS TSHZ1 REST ZNF592 MEF2D FAM13A FAM13A-AS1 TIGD2 NAP1L5 SNCA GC04M088970 GC04P089101
GH04G088752 1.1 ENCODE dbSUPER 16.2 +44.3 44300 3.3 ELF3 FOXA2 MLX ARID4B DMAP1 RAD21 RARA YY1 GATA4 CREM FAM13A-AS1 NAP1L5 PIR43353 LOC105377327
GH04G088791 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +82.9 82887 2.4 CTCF PKNOX1 MTA2 L3MBTL2 NR2F1 HLF DPF2 RAD21 IKZF1 STAT3 FAM13A-AS1 NAP1L5 FAM13A HERC6 HERC5 PIR43353 LOC105377327
GH04G088743 0.7 ENCODE dbSUPER 19.3 +34.1 34101 1.3 JUND FOS HNF4A FAM13A-AS1 NAP1L5 PIR43353 LOC105377327
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM13A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM13A-AS1 Gene

Chromosome:
4
Start:
88,709,789 bp from pter
End:
88,730,103 bp from pter
Size:
20,315 bases
Orientation:
Plus strand

Genomic View for FAM13A-AS1 Gene

Genes around FAM13A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM13A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM13A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM13A-AS1 Gene

Proteins for FAM13A-AS1 Gene

Post-translational modifications for FAM13A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM13A-AS1 Gene

Domains & Families for FAM13A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM13A-AS1 Gene

Function for FAM13A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM13A-AS1 Gene

Localization for FAM13A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM13A-AS1 Gene

Pathways & Interactions for FAM13A-AS1 Gene

SuperPathways for FAM13A-AS1 Gene

No Data Available

Interacting Proteins for FAM13A-AS1 Gene

Gene Ontology (GO) - Biological Process for FAM13A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM13A-AS1 Gene

Drugs & Compounds for FAM13A-AS1 Gene

No Compound Related Data Available

Transcripts for FAM13A-AS1 Gene

mRNA/cDNA for FAM13A-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM13A-AS1 Gene

FAM13A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM13A-AS1 Gene

No ASD Table

Relevant External Links for FAM13A-AS1 Gene

GeneLoc Exon Structure for
FAM13A-AS1
ECgene alternative splicing isoforms for
FAM13A-AS1

Expression for FAM13A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM13A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FAM13A-AS1 Gene

This gene is overexpressed in Whole Blood (x4.3).

SOURCE GeneReport for Unigene cluster for FAM13A-AS1 Gene:

Hs.744957
genes like me logo Genes that share expression patterns with FAM13A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM13A-AS1 Gene

Orthologs for FAM13A-AS1 Gene

Evolution for FAM13A-AS1 Gene

ENSEMBL:
Gene Tree for FAM13A-AS1 (if available)
TreeFam:
Gene Tree for FAM13A-AS1 (if available)

No data available for Orthologs for FAM13A-AS1 Gene

Paralogs for FAM13A-AS1 Gene

No data available for Paralogs for FAM13A-AS1 Gene

Variants for FAM13A-AS1 Gene

Sequence variations from dbSNP and Humsavar for FAM13A-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000083741 -- 88,714,486(+) TATGT(A/T)ATCCT intron-variant
rs1000147170 -- 88,715,576(+) ACTTT(G/T)GGAGG intron-variant
rs1000369605 -- 88,720,355(+) ACAAA(G/T)AGAGC intron-variant
rs1000444652 -- 88,714,254(+) GTGAG(C/T)CACCC intron-variant
rs1000479840 -- 88,726,985(+) GTTGC(C/T)GTAAA intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FAM13A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv461576 CNV gain 19166990
nsv470051 CNV gain 18288195
nsv594806 CNV gain 21841781

Relevant External Links for FAM13A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM13A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM13A-AS1 Gene

Disorders for FAM13A-AS1 Gene

Relevant External Links for FAM13A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM13A-AS1

No disorders were found for FAM13A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM13A-AS1 Gene

Publications for FAM13A-AS1 Gene

  1. Cloning and characterization of FAM13A1--a gene near a milk protein QTL on BTA6: evidence for population-wide linkage disequilibrium in Israeli Holsteins. (PMID: 15234000) Cohen M. … Seroussi E. (Genomics 2004) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FAM13A-AS1 Gene

Sources for FAM13A-AS1 Gene

Content
Loading form....