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Aliases for FAM138E Gene

Subcategory (RNA class) for FAM138E Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FAM138E Gene

  • Family With Sequence Similarity 138, Member E 2 3
  • F379 3

External Ids for FAM138E Gene

ORGUL Members for FAM138E Gene

Previous GeneCards Identifiers for FAM138E Gene

  • GC15U900755
  • GC19M000029
  • GC19M000077
  • GC15P102495

Summaries for FAM138E Gene

GeneCards Summary for FAM138E Gene

FAM138E (Family With Sequence Similarity 138, Member E) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM138E Gene

Genomics for FAM138E Gene

Regulatory Elements for FAM138E Gene

Genomic Location for FAM138E Gene

Start:
101,954,885 bp from pter
End:
101,956,412 bp from pter
Size:
1,528 bases
Orientation:
Plus strand

Genomic View for FAM138E Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM138E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM138E Gene

Proteins for FAM138E Gene

Post-translational modifications for FAM138E Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM138E Gene

Domains for FAM138E Gene

Gene Families for FAM138E Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM138E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM138E Gene

Function for FAM138E Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM138E Gene

Localization for FAM138E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM138E Gene

Pathways for FAM138E Gene

SuperPathways for FAM138E Gene

No Data Available

Interacting Proteins for FAM138E Gene

Gene Ontology (GO) - Biological Process for FAM138E Gene

None

No data available for Pathways by source for FAM138E Gene

Transcripts for FAM138E Gene

mRNA/cDNA for FAM138E Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FAM138E Gene

No ASD Table

Relevant External Links for FAM138E Gene

GeneLoc Exon Structure for
FAM138E
ECgene alternative splicing isoforms for
FAM138E

Expression for FAM138E Gene

mRNA expression in normal human tissues for FAM138E Gene

genes like me logo Genes that share expressions with FAM138E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for FAM138E Gene

Orthologs for FAM138E Gene

Evolution for FAM138E Gene

ENSEMBL:
Gene Tree for FAM138E (if available)
TreeFam:
Gene Tree for FAM138E (if available)

No data available for Orthologs for FAM138E Gene

Paralogs for FAM138E Gene

No data available for Paralogs for FAM138E Gene

Variants for FAM138E Gene

Sequence variations from dbSNP and Humsavar for FAM138E Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs3871753 -- 101,953,582(-) gaaat(G/T)ttaaa upstream-variant-2KB
rs55731028 -- 101,954,215(+) ATCTA(C/T)GCATA upstream-variant-2KB
rs60526085 -- 101,955,474(+) TATTT(-/ATTT)TTTAT intron-variant
rs62028197 -- 101,953,895(+) TAAAT(A/G)TTTTC upstream-variant-2KB
rs62028198 -- 101,954,224(+) TAAAC(A/G)TTAAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM138E Gene

Variant ID Type Subtype PubMed ID
esv27561 CNV Gain 19812545
nsv904622 CNV Gain 21882294
nsv9315 CNV Gain+Loss 18304495
nsv471523 CNV Duplication 19718026
nsv820527 CNV Duplication 20802225

Relevant External Links for FAM138E Gene

HapMap Linkage Disequilibrium report
FAM138E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM138E Gene

Disorders for FAM138E Gene

No disorders were found for FAM138E Gene.

No data available for UniProtKB/Swiss-Prot for FAM138E Gene

Publications for FAM138E Gene

  1. Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N. … Weber B.H.F. (Biochim. Biophys. Acta 2001) 2 3
  2. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A. … Ledbetter D.H. (Genomics 2004) 2 3

Products for FAM138E Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM138E
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM138E
    • Block miRNA regulation of FAM138E using miScript Target Protectors

    Sources for FAM138E Gene

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