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FAM138E Gene(RNA Gene)

Family With Sequence Similarity 138 Member E

GCID:
GC15P101954
GIFtS:
14
Genes Participants
UDN Logo

Aliases for FAM138E Gene

Subcategory (RNA class) for FAM138E Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM138E Gene

  • Family With Sequence Similarity 138 Member E 2 3 5
  • Family With Sequence Similarity 138, Member E 2
  • F379 3

External Ids for FAM138E Gene

Previous GeneCards Identifiers for FAM138E Gene

  • GC15U900755
  • GC19M000029
  • GC19M000077
  • GC15P102495

Summaries for FAM138E Gene

GeneCards Summary for FAM138E Gene

FAM138E (Family With Sequence Similarity 138 Member E) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM138E Gene

Genomics for FAM138E Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAM138E Gene

Enhancers for FAM138E Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F101955 0.8 Ensembl ENCODE 0.8 +1.4 1374 1.1 POLR2A SMARCA4 L3MBTL2 NFRKB NR4A1 SUPT5H MGA FAM138E WASH3P
GH15F101953 0.4 Ensembl 0.8 -0.4 -449 1.5 POLR2A SUPT5H FAM138E OR4G6P
GH15F101959 0.2 Ensembl 0.8 +4.8 4816 0.2 WASH3P FAM138E
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM138E on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the FAM138E gene promoter:

Genomic Location for FAM138E Gene

Chromosome:
15
Start:
101,954,885 bp from pter
End:
101,956,412 bp from pter
Size:
1,528 bases
Orientation:
Plus strand

Genomic View for FAM138E Gene

Genes around FAM138E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM138E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM138E Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAM138E Gene

Proteins for FAM138E Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAM138E Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM138E Gene

Domains & Families for FAM138E Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM138E Gene

Function for FAM138E Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM138E Gene

Localization for FAM138E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM138E Gene

Pathways & Interactions for FAM138E Gene

SuperPathways for FAM138E Gene

PathCards logo More details on SuperPathways for FAM138E
No Data Available

Interacting Proteins for FAM138E Gene

Gene Ontology (GO) - Biological Process for FAM138E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM138E Gene

Drugs & Compounds for FAM138E Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAM138E Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAM138E Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM138E Gene

No ASD Table

Relevant External Links for FAM138E Gene

GeneLoc Exon Structure for
FAM138E
ECgene alternative splicing isoforms for
FAM138E

Expression for FAM138E Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM138E Gene

mRNA expression in normal human tissues for FAM138E Gene
mRNA expression by GTEx for FAM138E Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM138E Gene:

FAM138E
genes like me logo Genes that share expression patterns with FAM138E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM138E Gene

Orthologs for FAM138E Gene

Evolution for FAM138E Gene

ENSEMBL:
Gene Tree for FAM138E (if available)
TreeFam:
Gene Tree for FAM138E (if available)

No data available for Orthologs for FAM138E Gene

Paralogs for FAM138E Gene

No data available for Paralogs for FAM138E Gene

Variants for FAM138E Gene

Sequence variations from dbSNP and Humsavar for FAM138E Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs111731708 -- 101,956,368(+) ATAGT(A/T)GGTTA downstream-variant-500B
rs11266860 -- 101,956,638(-) CAACT(C/T)CTTCT downstream-variant-500B
rs11266861 -- 101,956,416(-) GCAAC(A/T)TGAAG downstream-variant-500B
rs112793672 -- 101,955,979(+) TGTCT(A/G)TTCCC nc-transcript-variant
rs11490406 -- 101,956,642(+) GGAGT(C/T)GTGTG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM138E Gene

Variant ID Type Subtype PubMed ID
nsv977806 CNV duplication 23825009
nsv977765 CNV duplication 23825009
nsv952893 CNV duplication 24416366
nsv9315 CNV gain+loss 18304495
nsv820527 CNV duplication 20802225
nsv570923 CNV gain 21841781
nsv471523 CNV gain 19718026
nsv1147785 CNV duplication 26484159
esv27561 CNV gain 19812545
dgv1278n106 CNV duplication 24896259

Relevant External Links for FAM138E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM138E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM138E Gene

Disorders for FAM138E Gene

Relevant External Links for FAM138E

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM138E

No disorders were found for FAM138E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM138E Gene

Publications for FAM138E Gene

  1. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A. … Ledbetter D.H. (Genomics 2004) 2 3 64
  2. Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N. … Weber B.H.F. (Biochim. Biophys. Acta 2001) 2 3 64

Products for FAM138E Gene

Sources for FAM138E Gene

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