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Aliases for FAM138D Gene

Subcategory (RNA class) for FAM138D Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM138D Gene

  • Family With Sequence Similarity 138 Member D 2 3 5
  • Family With Sequence Similarity 138, Member D 2
  • F379 Retina-Specific Protein 3
  • F379 3

External Ids for FAM138D Gene

Previous GeneCards Identifiers for FAM138D Gene

  • GC12U900769
  • GC12M000147

Summaries for FAM138D Gene

GeneCards Summary for FAM138D Gene

FAM138D (Family With Sequence Similarity 138 Member D) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM138D Gene

Genomics for FAM138D Gene

Regulatory Elements for FAM138D Gene

Enhancers for FAM138D Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F000036 0.5 Ensembl 0.8 +1.4 1421 1.0 POLR2A L3MBTL2 PRDM1 MGA FAM138D LOC100288778
GH12F000033 0.4 Ensembl 0.8 +4.8 4833 0.2 ZNF316 EMSY FAM138D LOC100288778
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM138D on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM138D Gene

Chromosome:
12
Start:
36,602 bp from pter
End:
38,133 bp from pter
Size:
1,532 bases
Orientation:
Minus strand

Genomic View for FAM138D Gene

Genes around FAM138D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM138D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM138D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM138D Gene

Proteins for FAM138D Gene

Post-translational modifications for FAM138D Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM138D Gene

Domains & Families for FAM138D Gene

Suggested Antigen Peptide Sequences for FAM138D Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for FAM138D Gene

Function for FAM138D Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM138D Gene

Localization for FAM138D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM138D Gene

Pathways & Interactions for FAM138D Gene

SuperPathways for FAM138D Gene

No Data Available

Interacting Proteins for FAM138D Gene

Gene Ontology (GO) - Biological Process for FAM138D Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM138D Gene

Transcripts for FAM138D Gene

mRNA/cDNA for FAM138D Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM138D Gene

Family with sequence similarity 138, member D:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM138D Gene

No ASD Table

Relevant External Links for FAM138D Gene

GeneLoc Exon Structure for
FAM138D
ECgene alternative splicing isoforms for
FAM138D

Expression for FAM138D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM138D Gene

Protein differential expression in normal tissues from HIPED for FAM138D Gene

This gene is overexpressed in Serum (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for FAM138D Gene



Protein tissue co-expression partners for FAM138D Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM138D Gene:

FAM138D

SOURCE GeneReport for Unigene cluster for FAM138D Gene:

Hs.722487
genes like me logo Genes that share expression patterns with FAM138D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM138D Gene

Orthologs for FAM138D Gene

Evolution for FAM138D Gene

ENSEMBL:
Gene Tree for FAM138D (if available)
TreeFam:
Gene Tree for FAM138D (if available)

No data available for Orthologs for FAM138D Gene

Paralogs for FAM138D Gene

No data available for Paralogs for FAM138D Gene

Variants for FAM138D Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM138D Gene

Variant ID Type Subtype PubMed ID
nsv482937 CNV loss 15286789
nsv1145916 CNV duplication 26484159
nsv1115424 CNV duplication 24896259
nsv1110202 CNV duplication 24896259
nsv1078332 CNV duplication 25765185

Relevant External Links for FAM138D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM138D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for FAM138D Gene

Disorders for FAM138D Gene

Relevant External Links for FAM138D

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM138D

No disorders were found for FAM138D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM138D Gene

Publications for FAM138D Gene

  1. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A. … Ledbetter D.H. (Genomics 2004) 2 3 64
  2. Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N. … Weber B.H.F. (Biochim. Biophys. Acta 2001) 2 3 64

Products for FAM138D Gene

Sources for FAM138D Gene

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