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Aliases for FAM138C Gene

Subcategory (RNA class) for FAM138C Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for FAM138C Gene

  • Family With Sequence Similarity 138, Member C 2 3
  • F379 Retina-Specific Protein 3
  • F379 3

External Ids for FAM138C Gene

ORGUL Members for FAM138C Gene

Summaries for FAM138C Gene

GeneCards Summary for FAM138C Gene

FAM138C (Family With Sequence Similarity 138, Member C) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM138C Gene

Genomics for FAM138C Gene

Genomic Location for FAM138C Gene

Start:
34,394 bp from pter
End:
35,871 bp from pter
Size:
1,478 bases
Orientation:
Minus strand

Genomic View for FAM138C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM138C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM138C Gene

Regulatory Elements for FAM138C Gene

Proteins for FAM138C Gene

Post-translational modifications for FAM138C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM138C Gene

Domains for FAM138C Gene

Gene Families for FAM138C Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with FAM138C: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for FAM138C Gene

Function for FAM138C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM138C Gene

Localization for FAM138C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM138C Gene COMPARTMENTS Subcellular localization image for FAM138C gene
Compartment Confidence
cytosol 2
extracellular 2
golgi apparatus 1
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for FAM138C Gene

Pathways for FAM138C Gene

SuperPathways for FAM138C Gene

No Data Available

Interacting Proteins for FAM138C Gene

Gene Ontology (GO) - Biological Process for FAM138C Gene

None

No data available for Pathways by source for FAM138C Gene

Transcripts for FAM138C Gene

mRNA/cDNA for FAM138C Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM138C Gene

Family with sequence similarity 138, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM138C Gene

No ASD Table

Relevant External Links for FAM138C Gene

GeneLoc Exon Structure for
FAM138C
ECgene alternative splicing isoforms for
FAM138C

Expression for FAM138C Gene

mRNA expression in normal human tissues for FAM138C Gene

SOURCE GeneReport for Unigene cluster for FAM138C Gene Hs.744304

genes like me logo Genes that share expressions with FAM138C: view

Orthologs for FAM138C Gene

Evolution for FAM138C Gene

ENSEMBL:
Gene Tree for FAM138C (if available)
TreeFam:
Gene Tree for FAM138C (if available)

No data available for Orthologs for FAM138C Gene

Paralogs for FAM138C Gene

genes like me logo Genes that share paralogs with FAM138C: view

No data available for Paralogs for FAM138C Gene

Variants for FAM138C Gene

Sequence variations from dbSNP and Humsavar for FAM138C Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs374850 -- 35,099(-) aatca(C/T)aaaag nc-transcript-variant
rs424484 -- 35,070(+) tcccc(A/C/G/T)ccaaa nc-transcript-variant
rs9408059 -- 35,199(+) ggctg(A/G)ggtgg nc-transcript-variant
rs62531166 -- 34,493(+) GGTTC(C/T)GCCAT nc-transcript-variant
rs62531167 -- 34,553(+) GCAGG(C/T)GGAGG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM138C Gene

Variant ID Type Subtype PubMed ID
nsv8400 CNV Gain+Loss 18304495
nsv891939 CNV Loss 21882294
esv23366 CNV Gain+Loss 19812545
dgv2266e1 CNV Complex 17122850
esv735 CNV CNV 17122850

Relevant External Links for FAM138C Gene

HapMap Linkage Disequilibrium report
FAM138C

Disorders for FAM138C Gene

No disorders were found for FAM138C Gene.

No data available for UniProtKB/Swiss-Prot for FAM138C Gene

Publications for FAM138C Gene

  1. Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N. … Weber B.H.F. (Biochim. Biophys. Acta 2001) 2 3
  2. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A. … Ledbetter D.H. (Genomics 2004) 2 3

Products for FAM138C Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM138C
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM138C
    • Block miRNA regulation of FAM138C using miScript Target Protectors

    Sources for FAM138C Gene

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