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Aliases for FAM138C Gene

Subcategory (RNA class) for FAM138C Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM138C Gene

  • Family With Sequence Similarity 138 Member C 2 3 5
  • Family With Sequence Similarity 138, Member C 2
  • F379 Retina-Specific Protein 3
  • F379 3

External Ids for FAM138C Gene

Previous GeneCards Identifiers for FAM138C Gene

  • GC09U900868
  • GC09M000027

Summaries for FAM138C Gene

GeneCards Summary for FAM138C Gene

FAM138C (Family With Sequence Similarity 138 Member C) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM138C Gene

Genomics for FAM138C Gene

Regulatory Elements for FAM138C Gene

Enhancers for FAM138C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G000041 0.4 Ensembl 0.4 -5.5 -5530 0.4 SPI1 GC09M000028 FAM138C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM138C on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM138C Gene

Chromosome:
9
Start:
34,394 bp from pter
End:
35,871 bp from pter
Size:
1,478 bases
Orientation:
Minus strand

Genomic View for FAM138C Gene

Genes around FAM138C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM138C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM138C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM138C Gene

Proteins for FAM138C Gene

Post-translational modifications for FAM138C Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM138C Gene

Domains & Families for FAM138C Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM138C Gene

Function for FAM138C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM138C Gene

Localization for FAM138C Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM138C gene
Compartment Confidence
extracellular 2
cytosol 2
mitochondrion 1
nucleus 1
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM138C Gene

Pathways & Interactions for FAM138C Gene

SuperPathways for FAM138C Gene

No Data Available

Interacting Proteins for FAM138C Gene

Gene Ontology (GO) - Biological Process for FAM138C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM138C Gene

Drugs & Compounds for FAM138C Gene

No Compound Related Data Available

Transcripts for FAM138C Gene

mRNA/cDNA for FAM138C Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM138C Gene

Family with sequence similarity 138, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM138C Gene

No ASD Table

Relevant External Links for FAM138C Gene

GeneLoc Exon Structure for
FAM138C
ECgene alternative splicing isoforms for
FAM138C

Expression for FAM138C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM138C Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM138C Gene:

FAM138C

SOURCE GeneReport for Unigene cluster for FAM138C Gene:

Hs.744304
genes like me logo Genes that share expression patterns with FAM138C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM138C Gene

Orthologs for FAM138C Gene

Evolution for FAM138C Gene

ENSEMBL:
Gene Tree for FAM138C (if available)
TreeFam:
Gene Tree for FAM138C (if available)

No data available for Orthologs for FAM138C Gene

Paralogs for FAM138C Gene

No data available for Paralogs for FAM138C Gene

Variants for FAM138C Gene

Sequence variations from dbSNP and Humsavar for FAM138C Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1007154753 -- 35,524(+) TCGGG(A/G)GTCAG nc-transcript-variant
rs1031349509 -- 36,745(+) TGGAC(C/G)GTGGA upstream-variant-2KB
rs1037155312 -- 35,445(+) GCTTA(A/G)AAGAA intron-variant
rs1039097162 -- 35,575(+) AGCAC(C/T)TGGCT nc-transcript-variant
rs1051274245 -- 35,513(+) AGTCA(C/G)CAGCA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM138C Gene

Variant ID Type Subtype PubMed ID
dgv1664n106 CNV duplication 24896259
dgv1956e59 CNV duplication 20981092
dgv1957e59 CNV duplication 20981092
dgv1e59 CNV duplication 20981092
dgv3939n106 CNV duplication 24896259
dgv4273e59 CNV duplication 20981092
esv22059 CNV gain+loss 19812545
esv23366 CNV gain+loss 19812545
esv27265 CNV gain+loss 19812545
esv2759654 CNV gain+loss 17122850
esv3433926 CNV duplication 20981092
esv994482 CNV gain 20482838
nsv1076307 CNV duplication 25765185
nsv1076458 CNV duplication 25765185
nsv1078624 CNV duplication 25765185
nsv1110123 CNV duplication 24896259
nsv1139462 CNV duplication 24896259
nsv1147468 CNV duplication 26484159
nsv1148144 CNV duplication 26484159
nsv428112 CNV gain 18775914
nsv469759 CNV gain 16826518
nsv471520 CNV gain 19718026
nsv471591 CNV loss 15918152
nsv482937 CNV loss 15286789
nsv7879 CNV gain+loss 18304495
nsv820962 CNV duplication 20802225
nsv8400 CNV gain+loss 18304495
nsv945486 CNV duplication 23825009
nsv945487 CNV duplication 23825009
nsv945699 CNV duplication 23825009
nsv960766 CNV duplication 23825009
nsv961258 CNV duplication 23825009
nsv961259 CNV duplication 23825009
nsv9651 CNV gain+loss 18304495
nsv968757 CNV duplication 23825009

Relevant External Links for FAM138C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM138C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM138C Gene

Disorders for FAM138C Gene

Relevant External Links for FAM138C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM138C

No disorders were found for FAM138C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM138C Gene

Publications for FAM138C Gene

  1. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A. … Ledbetter D.H. (Genomics 2004) 2 3 64
  2. Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N. … Weber B.H.F. (Biochim. Biophys. Acta 2001) 2 3 64

Products for FAM138C Gene

Sources for FAM138C Gene

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