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Aliases for FAM138B Gene

Subcategory (RNA class) for FAM138B Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FAM138B Gene

  • Family With Sequence Similarity 138 Member B 2 3 5
  • Family With Sequence Similarity 138, Member B 2
  • Chromosome 2 F379 Retina Specific Protein 3
  • F379 Retina-Specific Protein 3
  • BA395L14.6 3
  • F379 3

External Ids for FAM138B Gene

Previous GeneCards Identifiers for FAM138B Gene

  • GC02U901151
  • GC02P114052
  • GC19M000076
  • GC02P114335

Summaries for FAM138B Gene

GeneCards Summary for FAM138B Gene

FAM138B (Family With Sequence Similarity 138 Member B) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FAM138B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM138B Gene

Genomics for FAM138B Gene

Regulatory Elements for FAM138B Gene

Enhancers for FAM138B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H113551 0.9 Ensembl ENCODE 0.3 -25.6 -25575 1 HDAC1 LEF1 L3MBTL2 NFRKB NR4A1 MAFG ZNF592 ZNF316 NFIC SMARCA4 DDX11L2 GC02M113549 FAM138B
GH02H113571 0.4 Ensembl 0.4 -5.6 -5582 0 ZNF592 DDX11L2 RPL23AP7 ENSG00000227359 FAM138B GC02M113549
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM138B on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM138B Gene

Chromosome:
2
Start:
113,577,382 bp from pter
End:
113,578,852 bp from pter
Size:
1,471 bases
Orientation:
Plus strand

Genomic View for FAM138B Gene

Genes around FAM138B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM138B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM138B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM138B Gene

Proteins for FAM138B Gene

Post-translational modifications for FAM138B Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM138B Gene

Domains & Families for FAM138B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM138B Gene

Function for FAM138B Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FAM138B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM138B Gene

Localization for FAM138B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM138B Gene

Pathways & Interactions for FAM138B Gene

SuperPathways for FAM138B Gene

No Data Available

Interacting Proteins for FAM138B Gene

Gene Ontology (GO) - Biological Process for FAM138B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM138B Gene

Drugs & Compounds for FAM138B Gene

No Compound Related Data Available

Transcripts for FAM138B Gene

mRNA/cDNA for FAM138B Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM138B Gene

Family with sequence similarity 138, member B:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FAM138B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for FAM138B Gene

No ASD Table

Relevant External Links for FAM138B Gene

GeneLoc Exon Structure for
FAM138B
ECgene alternative splicing isoforms for
FAM138B

Expression for FAM138B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM138B Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM138B Gene:

FAM138B

SOURCE GeneReport for Unigene cluster for FAM138B Gene:

Hs.640260
genes like me logo Genes that share expression patterns with FAM138B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM138B Gene

Orthologs for FAM138B Gene

Evolution for FAM138B Gene

ENSEMBL:
Gene Tree for FAM138B (if available)
TreeFam:
Gene Tree for FAM138B (if available)

No data available for Orthologs for FAM138B Gene

Paralogs for FAM138B Gene

No data available for Paralogs for FAM138B Gene

Variants for FAM138B Gene

Sequence variations from dbSNP and Humsavar for FAM138B Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1007054350 -- 113,577,296(+) AATGA(C/G)CCAGC upstream-variant-2KB
rs1013250968 -- 113,576,401(+) GATGG(A/G)GTATC upstream-variant-2KB
rs10176780 -- 113,577,725(+) ACCCC(A/C)GATGC nc-transcript-variant
rs1018887162 -- 113,578,060(+) CCAAA(G/T)AGTTG nc-transcript-variant
rs1020547999 -- 113,579,171(+) TGTGA(C/G)AGCAA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM138B Gene

Variant ID Type Subtype PubMed ID
dgv1164e212 CNV loss 25503493
esv24774 CNV gain 19812545
esv2759085 CNV gain+loss 17122850
esv3347005 CNV duplication 20981092
esv3349788 CNV duplication 20981092
esv3415262 CNV duplication 20981092
esv3592016 CNV gain 21293372
esv3592025 CNV loss 21293372
esv3592026 CNV gain 21293372
nsv10133 CNV gain 18304495
nsv1076493 CNV duplication 25765185
nsv1124810 CNV duplication 24896259
nsv1154012 CNV duplication 26484159
nsv582714 CNV gain 21841781
nsv821507 CNV duplication 20802225
nsv834334 CNV gain 17160897
nsv961638 CNV duplication 23825009

Relevant External Links for FAM138B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM138B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM138B Gene

Disorders for FAM138B Gene

Relevant External Links for FAM138B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM138B

No disorders were found for FAM138B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM138B Gene

Publications for FAM138B Gene

  1. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A … Ledbetter DH (Genomics 2004) 2 3 60
  2. Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N … Weber BH (Biochimica et biophysica acta 2001) 2 3 60
  3. Gene content and function of the ancestral chromosome fusion site in human chromosome 2q13-2q14.1 and paralogous regions. (PMID: 12421752) Fan Y … Trask BJ (Genome research 2002) 3 60

Products for FAM138B Gene

Sources for FAM138B Gene

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