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Aliases for FAM138A Gene

Subcategory (RNA class) for FAM138A Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for FAM138A Gene

  • Family With Sequence Similarity 138, Member A 2 3
  • Chromosome 1 F379 Retina Specific Protein 3
  • F379 Retina-Specific Protein 3
  • FAM138F 3
  • F379 3

External Ids for FAM138A Gene

Previous GeneCards Identifiers for FAM138A Gene

  • GC01U901628
  • GC01M000026

Summaries for FAM138A Gene

GeneCards Summary for FAM138A Gene

FAM138A (Family With Sequence Similarity 138, Member A) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM138A Gene

Genomics for FAM138A Gene

Regulatory Elements for FAM138A Gene

Genomic Location for FAM138A Gene

34,554 bp from pter
36,081 bp from pter
1,528 bases
Minus strand

Genomic View for FAM138A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM138A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM138A Gene

Proteins for FAM138A Gene

Post-translational modifications for FAM138A Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM138A Gene

Domains & Families for FAM138A Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAM138A Gene

Function for FAM138A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM138A Gene

Localization for FAM138A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM138A Gene

Pathways & Interactions for FAM138A Gene

SuperPathways for FAM138A Gene

No Data Available

Interacting Proteins for FAM138A Gene

Gene Ontology (GO) - Biological Process for FAM138A Gene


No data available for Pathways by source and SIGNOR curated interactions for FAM138A Gene

Drugs & Compounds for FAM138A Gene

No Compound Related Data Available

Transcripts for FAM138A Gene

mRNA/cDNA for FAM138A Gene

(7) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM138A Gene

Family with sequence similarity 138, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM138A Gene

No ASD Table

Relevant External Links for FAM138A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FAM138A Gene

mRNA expression in normal human tissues for FAM138A Gene

SOURCE GeneReport for Unigene cluster for FAM138A Gene Hs.569137

genes like me logo Genes that share expression patterns with FAM138A: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for FAM138A Gene

Orthologs for FAM138A Gene

Evolution for FAM138A Gene

Gene Tree for FAM138A (if available)
Gene Tree for FAM138A (if available)

No data available for Orthologs for FAM138A Gene

Paralogs for FAM138A Gene

No data available for Paralogs for FAM138A Gene

Variants for FAM138A Gene

Sequence variations from dbSNP and Humsavar for FAM138A Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs560450 -- 37,055(-) ACTGG(A/G)TGGAG upstream-variant-2KB
rs3871734 -- 35,082(+) ACCAC(A/G)TGCTG nc-transcript-variant
rs3871752 -- 37,365(+) atgtt(C/T)aatgt upstream-variant-2KB
rs11266862 -- 34,810(+) GAGGC(A/T)GCATG nc-transcript-variant
rs16994639 -- 34,771(+) CAGGC(C/G)GAGGA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM138A Gene

Variant ID Type Subtype PubMed ID
nsv7879 CNV Gain+Loss 18304495
dgv2n71 CNV Gain 21882294
dgv1e1 CNV Complex 17122850
nsv428112 CNV Gain 18775914
dgv3e1 CNV Complex 17122850
esv27265 CNV Gain+Loss 19812545
nsv469759 CNV Loss 16826518
nsv471591 CNV Loss 15918152
nsv9651 CNV Gain+Loss 18304495
nsv910070 CNV Gain 21882294
nsv471520 CNV Duplication 19718026
esv994482 CNV Gain 20482838
nsv820962 CNV Duplication 20802225
esv22059 CNV Gain+Loss 19812545

Relevant External Links for FAM138A Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM138A Gene

Disorders for FAM138A Gene

Relevant External Links for FAM138A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with FAM138A: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM138A Gene

Publications for FAM138A Gene

  1. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A. … Ledbetter D.H. (Genomics 2004) 2 67
  2. Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. (PMID: 11779631) Mah N. … Weber B.H.F. (Biochim. Biophys. Acta 2001) 2 67
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 67
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 67
  5. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 67

Products for FAM138A Gene

Sources for FAM138A Gene

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