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Aliases for FAM129C Gene

Aliases for FAM129C Gene

  • Family With Sequence Similarity 129 Member C 2 3 5
  • B-Cell Novel Protein 1 3 4
  • BCNP1 3 4
  • Family With Sequence Similarity 129, Member C 2
  • B Cell Novel Protein 1 2
  • Niban-Like Protein 2 3
  • Protein FAM129C 4

External Ids for FAM129C Gene

Previous GeneCards Identifiers for FAM129C Gene

  • GC19P017496
  • GC19P017634
  • GC19P017202
  • GC19P017557
  • GC19P017704
  • GC19P017727
  • GC19P018310
  • GC19P018694

Summaries for FAM129C Gene

GeneCards Summary for FAM129C Gene

FAM129C (Family With Sequence Similarity 129 Member C) is a Protein Coding gene. An important paralog of this gene is FAM129A.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM129C Gene

Genomics for FAM129C Gene

Regulatory Elements for FAM129C Gene

Enhancers for FAM129C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G017552 1.5 FANTOM5 ENCODE 12.7 +31.6 31557 4.4 HDGF PKNOX1 CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 MVB12A ENSG00000267904 ENSG00000268087 PGLS FAM129C COLGALT1 ENSG00000269578 BST2 PLVAP RPL18A
GH19G017561 1.1 Ensembl ENCODE 12.7 +38.2 38161 0.5 CBX3 ARNT CREB3L1 ZNF76 KLF17 ZBTB7B ZNF121 CBX5 ZNF143 CREM FAM129C PGLS BST2 MVB12A PLVAP COLGALT1 GC19M017590
GH19G017559 0.8 ENCODE 12.7 +36.8 36827 2.0 BCOR ESRRA IRF2 SUZ12 ARNT CREB3L1 ZNF121 CBX5 ZNF143 FOS FAM129C PGLS BST2 MVB12A PLVAP COLGALT1 GC19M017590
GH19G017778 1.6 FANTOM5 ENCODE dbSUPER 5.8 +255.7 255714 1.6 HDGF PKNOX1 AGO1 ARID4B SIN3A ZNF48 ZBTB7B TCF12 SLC30A9 ZNF121 FCHO1 ENSG00000268030 COLGALT1 ENSG00000268743 FAM129C JAK3 MAST3 GC19M017755 B3GNT3
GH19G017087 1.9 FANTOM5 Ensembl ENCODE dbSUPER 3.7 -432.9 -432914 4.8 FOXA2 ZFP64 ARID4B SIN3A SP3 GLIS1 RCOR2 KDM1A HNF4A CTCF MYO9B HAUS8 FAM129C MED26 ENSG00000269066 GC19M017078
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM129C on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM129C Gene

Chromosome:
19
Start:
17,523,301 bp from pter
End:
17,555,545 bp from pter
Size:
32,245 bases
Orientation:
Plus strand

Genomic View for FAM129C Gene

Genes around FAM129C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM129C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM129C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM129C Gene

Proteins for FAM129C Gene

  • Protein details for FAM129C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86XR2-NIBL2_HUMAN
    Recommended name:
    Niban-like protein 2
    Protein Accession:
    Q86XR2
    Secondary Accessions:
    • B4DNU3
    • B4DVN7
    • Q7Z6H6
    • Q86XR3
    • Q86XR4
    • Q8TEQ3

    Protein attributes for FAM129C Gene

    Size:
    697 amino acids
    Molecular mass:
    77413 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAG62749.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for FAM129C Gene

neXtProt entry for FAM129C Gene

Post-translational modifications for FAM129C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM129C Gene

Domains & Families for FAM129C Gene

Protein Domains for FAM129C Gene

Suggested Antigen Peptide Sequences for FAM129C Gene

Graphical View of Domain Structure for InterPro Entry

Q86XR2

UniProtKB/Swiss-Prot:

NIBL2_HUMAN :
  • Belongs to the Niban family.
Family:
  • Belongs to the Niban family.
genes like me logo Genes that share domains with FAM129C: view

No data available for Gene Families for FAM129C Gene

Function for FAM129C Gene

genes like me logo Genes that share phenotypes with FAM129C: view

Animal Model Products

CRISPR Products

miRNA for FAM129C Gene

miRTarBase miRNAs that target FAM129C

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM129C Gene

Localization for FAM129C Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM129C gene
Compartment Confidence
nucleus 2
mitochondrion 1
peroxisome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM129C Gene

Pathways & Interactions for FAM129C Gene

SuperPathways for FAM129C Gene

No Data Available

Interacting Proteins for FAM129C Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000335040%0d%0a9606.ENSP00000254231%0d%0a9606.ENSP00000257177%0d%0a9606.ENSP00000323889%0d%0a
Selected Interacting proteins: ENSP00000335040 for FAM129C Gene via STRING

Gene Ontology (GO) - Biological Process for FAM129C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM129C Gene

Drugs & Compounds for FAM129C Gene

No Compound Related Data Available

Transcripts for FAM129C Gene

Unigene Clusters for FAM129C Gene

Family with sequence similarity 129, member C:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM129C Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17
SP1: - - - -
SP2: - - - - -
SP3: - - -
SP4: - - - - -
SP5: - -
SP6:
SP7:

Relevant External Links for FAM129C Gene

GeneLoc Exon Structure for
FAM129C
ECgene alternative splicing isoforms for
FAM129C

Expression for FAM129C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM129C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM129C Gene

This gene is overexpressed in Spleen (x22.1), Whole Blood (x9.4), and Small Intestine - Terminal Ileum (x9.3).

Protein differential expression in normal tissues from HIPED for FAM129C Gene

This gene is overexpressed in Blymphocyte (20.7), Lymph node (13.0), Breast (12.5), and Monocytes (9.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM129C Gene



Protein tissue co-expression partners for FAM129C Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM129C Gene:

FAM129C

SOURCE GeneReport for Unigene cluster for FAM129C Gene:

Hs.434133

mRNA Expression by UniProt/SwissProt for FAM129C Gene:

Q86XR2-NIBL2_HUMAN
Tissue specificity: Specifically expressed in B-lymphocytes.
genes like me logo Genes that share expression patterns with FAM129C: view

Primer Products

No data available for Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM129C Gene

Orthologs for FAM129C Gene

This gene was present in the common ancestor of mammals.

Orthologs for FAM129C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM129C 34
  • 98.19 (n)
cow
(Bos Taurus)
Mammalia FAM129C 34 35
  • 83.19 (n)
dog
(Canis familiaris)
Mammalia FAM129C 34 35
  • 82.75 (n)
rat
(Rattus norvegicus)
Mammalia Fam129c 34
  • 73.67 (n)
mouse
(Mus musculus)
Mammalia Fam129c 34 16 35
  • 73.28 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia FAM129C 35
  • 41 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FAM129C 35
  • 35 (a)
OneToOne
Species where no ortholog for FAM129C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM129C Gene

ENSEMBL:
Gene Tree for FAM129C (if available)
TreeFam:
Gene Tree for FAM129C (if available)

Paralogs for FAM129C Gene

Variants for FAM129C Gene

Sequence variations from dbSNP and Humsavar for FAM129C Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000019230 -- 17,538,373(+) ATGGT(A/G)CCACT intron-variant
rs1000024503 -- 17,548,219(+) ATTCA(A/G)GGAAT intron-variant
rs1000093083 -- 17,549,681(+) AAGCT(C/T)GTGAA intron-variant, downstream-variant-500B, reference, synonymous-codon
rs1000126535 -- 17,542,476(+) GCAGG(A/G)TGTAC intron-variant
rs1000152465 -- 17,554,237(+) CAGTT(C/T)GGGAG intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FAM129C Gene

Variant ID Type Subtype PubMed ID
esv2422429 CNV duplication 17116639
esv2657201 CNV deletion 23128226
esv2661765 CNV deletion 23128226
esv2674708 CNV deletion 23128226
esv3643822 CNV loss 21293372
esv3643823 CNV loss 21293372
esv3643824 CNV loss 21293372
nsv833768 CNV loss 17160897

Variation tolerance for FAM129C Gene

Residual Variation Intolerance Score: 97.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.05; 90.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM129C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM129C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM129C Gene

Disorders for FAM129C Gene

Relevant External Links for FAM129C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM129C

No disorders were found for FAM129C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM129C Gene

Publications for FAM129C Gene

  1. Proteomic analysis of the cell-surface membrane in chronic lymphocytic leukemia: identification of two novel proteins, BCNP1 and MIG2B. (PMID: 12886250) Boyd R.S. … Dyer M.J.S. (Leukemia 2003) 2 3 4 64
  2. The possible roles of B-cell novel protein-1 (BCNP1) in cellular signalling pathways and in cancer. (PMID: 27680505) Patel S.J. … Clarkson B.D. (J. Cell. Mol. Med. 2016) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for FAM129C Gene

Sources for FAM129C Gene

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