Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FAM124B Gene

Aliases for FAM124B Gene

  • Family With Sequence Similarity 124 Member B 2 3 5
  • Family With Sequence Similarity 124B 2

External Ids for FAM124B Gene

Previous GeneCards Identifiers for FAM124B Gene

  • GC02M224951
  • GC02M224806
  • GC02M225243
  • GC02M217095

Summaries for FAM124B Gene

GeneCards Summary for FAM124B Gene

FAM124B (Family With Sequence Similarity 124 Member B) is a Protein Coding gene. Diseases associated with FAM124B include Charge Syndrome. An important paralog of this gene is FAM124A.

Additional gene information for FAM124B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM124B Gene

Genomics for FAM124B Gene

GeneHancer (GH) Regulatory Elements for FAM124B Gene

Promoters and enhancers for FAM124B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I224399 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 557.4 +0.8 798 4.2 ATF1 ARNT YY1 POLR2B ZNF766 GATA2 ATF7 GTF2B NCOA1 REST FAM124B WDFY1 LOC100419814 GC02M224396 GC02P224382
GH02I224369 Enhancer 0.6 ENCODE 16.4 +32.9 32886 0.2 CTCF ZNF654 FOXA2 FOXA3 ZNF143 SMC3 RAD21 FOXA1 FAM124B GC02M224363 GC02P224382
GH02I224442 Enhancer 0.6 FANTOM5 Ensembl 15.8 -40.5 -40516 1.2 POLR2A YY1 FAM124B LOC100419814 GC02P224426 ENSG00000274629
GH02I224377 Enhancer 0.5 Ensembl 17 +24.1 24084 1.2 CTCF RXRA HLF HNF4A RAD21 FAM124B GC02P224382 GC02M224363
GH02I224433 Enhancer 0.5 ENCODE 17 -31.7 -31711 1 SP1 POLR2A MAX POU5F1 FAM124B LOC100419814 CUL3 GC02P224426 ENSG00000274629
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FAM124B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FAM124B gene promoter:

Genomic Locations for FAM124B Gene

Genomic Locations for FAM124B Gene
chr2:224,378,698-224,402,085
(GRCh38/hg38)
Size:
23,388 bases
Orientation:
Minus strand
chr2:225,243,415-225,266,802
(GRCh37/hg19)

Genomic View for FAM124B Gene

Genes around FAM124B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM124B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM124B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM124B Gene

Proteins for FAM124B Gene

  • Protein details for FAM124B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H5Z6-F124B_HUMAN
    Recommended name:
    Protein FAM124B
    Protein Accession:
    Q9H5Z6
    Secondary Accessions:
    • A6NNC7
    • Q8NBZ4
    • Q8TAV7

    Protein attributes for FAM124B Gene

    Size:
    455 amino acids
    Molecular mass:
    50961 Da
    Quaternary structure:
    • Interacts with CHD7 and CDH8.
    SequenceCaution:
    • Sequence=BAB15471.1; Type=Frameshift; Positions=264; Evidence={ECO:0000305};

    Alternative splice isoforms for FAM124B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM124B Gene

Post-translational modifications for FAM124B Gene

No Post-translational modifications

Other Protein References for FAM124B Gene

No data available for DME Specific Peptides for FAM124B Gene

Domains & Families for FAM124B Gene

Gene Families for FAM124B Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for FAM124B Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM124B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H5Z6

UniProtKB/Swiss-Prot:

F124B_HUMAN :
  • Belongs to the FAM124 family.
Family:
  • Belongs to the FAM124 family.
genes like me logo Genes that share domains with FAM124B: view

Function for FAM124B Gene

Phenotypes From GWAS Catalog for FAM124B Gene

Gene Ontology (GO) - Molecular Function for FAM124B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with FAM124B: view

Phenotypes for FAM124B Gene

GenomeRNAi human phenotypes for FAM124B:
genes like me logo Genes that share phenotypes with FAM124B: view

Animal Model Products

miRNA for FAM124B Gene

miRTarBase miRNAs that target FAM124B

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM124B Gene

Localization for FAM124B Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM124B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FAM124B gene
Compartment Confidence
nucleus 5
mitochondrion 4
cytosol 2
peroxisome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoplasm (3)
  • Mitochondria (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for FAM124B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IDA --
GO:0005739 mitochondrion IDA --
genes like me logo Genes that share ontologies with FAM124B: view

Pathways & Interactions for FAM124B Gene

SuperPathways for FAM124B Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM124B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM124B Gene

Drugs & Compounds for FAM124B Gene

No Compound Related Data Available

Transcripts for FAM124B Gene

mRNA/cDNA for FAM124B Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(19) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM124B Gene

Family with sequence similarity 124B:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM124B Gene

ExUns: 1a · 1b ^ 2 ^ 3
SP1:
SP2: -

Relevant External Links for FAM124B Gene

GeneLoc Exon Structure for
FAM124B
ECgene alternative splicing isoforms for
FAM124B

Expression for FAM124B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAM124B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FAM124B Gene

This gene is overexpressed in Adipose - Subcutaneous (x4.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM124B Gene



NURSA nuclear receptor signaling pathways regulating expression of FAM124B Gene:

FAM124B

SOURCE GeneReport for Unigene cluster for FAM124B Gene:

Hs.147585

Evidence on tissue expression from TISSUES for FAM124B Gene

  • Heart(4)
  • Lung(4)
genes like me logo Genes that share expression patterns with FAM124B: view

No data available for Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM124B Gene

Orthologs for FAM124B Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM124B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM124B 33 34
  • 99.05 (n)
cow
(Bos Taurus)
Mammalia FAM124B 33 34
  • 81.04 (n)
dog
(Canis familiaris)
Mammalia FAM124B 33 34
  • 79.62 (n)
rat
(Rattus norvegicus)
Mammalia Fam124b 33
  • 75.98 (n)
mouse
(Mus musculus)
Mammalia Fam124b 33 16 34
  • 75.38 (n)
oppossum
(Monodelphis domestica)
Mammalia FAM124B 34
  • 57 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM124B 34
  • 51 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM124B 33 34
  • 64.41 (n)
lizard
(Anolis carolinensis)
Reptilia FAM124B 34
  • 44 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fam124b 33
  • 54.91 (n)
Str.19998 33
zebrafish
(Danio rerio)
Actinopterygii LOC572460 33
  • 54.9 (n)
FAM124B 34
  • 38 (a)
OneToOne
Species where no ortholog for FAM124B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM124B Gene

ENSEMBL:
Gene Tree for FAM124B (if available)
TreeFam:
Gene Tree for FAM124B (if available)

Paralogs for FAM124B Gene

Paralogs for FAM124B Gene

(1) SIMAP similar genes for FAM124B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM124B: view

Variants for FAM124B Gene

Sequence variations from dbSNP and Humsavar for FAM124B Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000206890 -- 224,386,226(-) G/A intron_variant
rs1000364115 -- 224,403,966(-) ACACA/ACA upstream_transcript_variant
rs1000451886 -- 224,397,761(-) T/C intron_variant
rs1000568038 -- 224,398,030(-) T/A intron_variant
rs1000648527 -- 224,387,404(-) C/G intron_variant

Variation tolerance for FAM124B Gene

Residual Variation Intolerance Score: 63.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.87; 48.37% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for FAM124B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM124B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FAM124B Gene

Disorders for FAM124B Gene

MalaCards: The human disease database

(1) MalaCards diseases for FAM124B Gene - From: DISEASES

Disorder Aliases PubMed IDs
charge syndrome
  • hhs
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for FAM124B

genes like me logo Genes that share disorders with FAM124B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FAM124B Gene

Publications for FAM124B Gene

  1. Identification and characterization of FAM124B as a novel component of a CHD7 and CHD8 containing complex. (PMID: 23285124) Batsukh T … Pauli S (PloS one 2012) 2 3 4 58
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  3. Toward a comprehensive characterization of a human cancer cell phosphoproteome. (PMID: 23186163) Zhou H … Mohammed S (Journal of proteome research 2013) 4 58
  4. An empirical framework for binary interactome mapping. (PMID: 19060904) Venkatesan K … Vidal M (Nature methods 2009) 3 58
  5. Shifted Transversal Design smart-pooling for high coverage interactome mapping. (PMID: 19447967) Xin X … Thierry-Mieg N (Genome research 2009) 3 58

Products for FAM124B Gene

Sources for FAM124B Gene

Content
Loading form....