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Aliases for FAM122A Gene

Aliases for FAM122A Gene

  • Family With Sequence Similarity 122A 2 3
  • C9orf42 3 4
  • Chromosome 9 Open Reading Frame 42 2
  • Protein FAM122A 3

External Ids for FAM122A Gene

Previous Symbols for FAM122A Gene

  • C9orf42

Summaries for FAM122A Gene

GeneCards Summary for FAM122A Gene

FAM122A (Family With Sequence Similarity 122A) is a Protein Coding gene. An important paralog of this gene is FAM122C.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM122A Gene

Genomics for FAM122A Gene

Genomic Location for FAM122A Gene

Start:
68,780,048 bp from pter
End:
68,784,608 bp from pter
Size:
4,561 bases
Orientation:
Plus strand

Genomic View for FAM122A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM122A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM122A Gene

Regulatory Elements for FAM122A Gene

Proteins for FAM122A Gene

  • Protein details for FAM122A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96E09-F122A_HUMAN
    Recommended name:
    Protein FAM122A
    Protein Accession:
    Q96E09
    Secondary Accessions:

    Protein attributes for FAM122A Gene

    Size:
    287 amino acids
    Molecular mass:
    30529 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM122A Gene

Proteomics data for FAM122A Gene at MOPED

Post-translational modifications for FAM122A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM122A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FAM122A Gene

Domains for FAM122A Gene

Protein Domains for FAM122A Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

F122A_HUMAN
Family:
  • Belongs to the FAM122 family.:
    • Q96E09
genes like me logo Genes that share domains with FAM122A: view

No data available for Gene Families for FAM122A Gene

Function for FAM122A Gene

Phenotypes for FAM122A Gene

GenomeRNAi human phenotypes for FAM122A:
genes like me logo Genes that share phenotypes with FAM122A: view

miRNA for FAM122A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM122A Gene

Localization for FAM122A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM122A Gene COMPARTMENTS Subcellular localization image for FAM122A gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for FAM122A Gene

Pathways for FAM122A Gene

SuperPathways for FAM122A Gene

No Data Available

Interacting Proteins for FAM122A Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000377807%0d%0a9606.ENSP00000300086%0d%0a9606.ENSP00000336591%0d%0a
Selected Interacting proteins: ENSP00000377807 Q96E09-F122A_HUMAN for FAM122A Gene via STRING I2D

Gene Ontology (GO) - Biological Process for FAM122A Gene

None

No data available for Pathways by source for FAM122A Gene

Transcripts for FAM122A Gene

mRNA/cDNA for FAM122A Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(130) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM122A Gene

Family with sequence similarity 122A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM122A Gene

No ASD Table

Relevant External Links for FAM122A Gene

GeneLoc Exon Structure for
FAM122A
ECgene alternative splicing isoforms for
FAM122A

Expression for FAM122A Gene

mRNA expression in normal human tissues for FAM122A Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for FAM122A Gene

SOURCE GeneReport for Unigene cluster for FAM122A Gene Hs.655572

genes like me logo Genes that share expressions with FAM122A: view

Orthologs for FAM122A Gene

This gene was present in the common ancestor of animals.

Orthologs for FAM122A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM122A 36
  • 99.54 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia FAM122A 36
  • 94.08 (n)
  • 97.56 (a)
FAM122A 37
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM122A 36
  • 94.19 (n)
  • 97.91 (a)
FAM122A 37
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam122a 36
  • 91.08 (n)
  • 95.42 (a)
Fam122a 16
Fam122a 37
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 73 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 83 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Fam122a 36
  • 92.66 (n)
  • 97.2 (a)
chicken
(Gallus gallus)
Aves FAM122A 36
  • 74.03 (n)
  • 71.74 (a)
FAM122A 37
  • 70 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia fam122a 36
  • 69.63 (n)
  • 72.22 (a)
zebrafish
(Danio rerio)
Actinopterygii fam122b 36
  • 66.29 (n)
  • 67.66 (a)
fam122b 37
  • 65 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG4497 37
  • 16 (a)
OneToMany
Species with no ortholog for FAM122A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM122A Gene

ENSEMBL:
Gene Tree for FAM122A (if available)
TreeFam:
Gene Tree for FAM122A (if available)

Paralogs for FAM122A Gene

Paralogs for FAM122A Gene

Selected SIMAP similar genes for FAM122A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM122A: view

Variants for FAM122A Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM122A Gene

Variant ID Type Subtype PubMed ID
esv2422258 CNV Duplication 17116639

Relevant External Links for FAM122A Gene

HapMap Linkage Disequilibrium report
FAM122A

No data available for Sequence variations from dbSNP and Humsavar for FAM122A Gene

Disorders for FAM122A Gene

No disorders were found for FAM122A Gene.

No data available for UniProtKB/Swiss-Prot for FAM122A Gene

Publications for FAM122A Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for FAM122A Gene

Sources for FAM122A Gene

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