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Aliases for FAM120AOS Gene

Aliases for FAM120AOS Gene

  • Family With Sequence Similarity 120A Opposite Strand 2 3
  • C9orf10OS 3 4
  • Chromosome 9 Open Reading Frame 10 Opposite Strand 2
  • Putative FAM120A Opposite Strand Protein 3

External Ids for FAM120AOS Gene

Previous HGNC Symbols for FAM120AOS Gene

  • C9orf10OS

Previous GeneCards Identifiers for FAM120AOS Gene

  • GC09M095242
  • GC09M096208
  • GC09M065886

Summaries for FAM120AOS Gene

GeneCards Summary for FAM120AOS Gene

FAM120AOS (Family With Sequence Similarity 120A Opposite Strand) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM120AOS Gene

Genomics for FAM120AOS Gene

Regulatory Elements for FAM120AOS Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FAM120AOS Gene

Start:
93,446,494 bp from pter
End:
93,453,592 bp from pter
Size:
7,099 bases
Orientation:
Minus strand

Genomic View for FAM120AOS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM120AOS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM120AOS Gene

Proteins for FAM120AOS Gene

  • Protein details for FAM120AOS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T036-F120S_HUMAN
    Recommended name:
    Putative FAM120A opposite strand protein
    Protein Accession:
    Q5T036
    Secondary Accessions:
    • A6NN20

    Protein attributes for FAM120AOS Gene

    Size:
    256 amino acids
    Molecular mass:
    27929 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM120AOS Gene

Proteomics data for FAM120AOS Gene at MOPED

Post-translational modifications for FAM120AOS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM120AOS Gene

No data available for DME Specific Peptides for FAM120AOS Gene

Domains for FAM120AOS Gene

Protein Domains for FAM120AOS Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM120AOS: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FAM120AOS Gene

Function for FAM120AOS Gene

Animal Model Products

CRISPR Products

miRNA for FAM120AOS Gene

miRTarBase miRNAs that target FAM120AOS

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM120AOS
    • Block miRNA regulation of FAM120AOS using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM120AOS

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM120AOS Gene

    Localization for FAM120AOS Gene

    Subcellular locations from

    COMPARTMENTS
    Jensen Localization Image for FAM120AOS Gene COMPARTMENTS Subcellular localization image for FAM120AOS gene
    Compartment Confidence
    cytosol 2
    nucleus 2

    No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM120AOS Gene

    Pathways for FAM120AOS Gene

    SuperPathways for FAM120AOS Gene

    No Data Available

    Interacting Proteins for FAM120AOS Gene

    STRING Interaction Network Preview (showing 1 interactants - click image to see details)
    http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000364561%0d%0a9606.ENSP00000385269%0d%0a
    Selected Interacting proteins: ENSP00000364561 for FAM120AOS Gene via STRING

    Symbol External ID(s) Details
    ELAVL1

    Gene Ontology (GO) - Biological Process for FAM120AOS Gene

    None

    No data available for Pathways by source for FAM120AOS Gene

    Transcripts for FAM120AOS Gene

    Unigene Clusters for FAM120AOS Gene

    Family with sequence similarity 120A opposite strand:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM120AOS
      • Block miRNA regulation of FAM120AOS using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for FAM120AOS

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for FAM120AOS Gene

      ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c · 6d · 6e · 6f
      SP1: - -
      SP2: -
      SP3: - -
      SP4: - - - - - - -
      SP5: - - -
      SP6: - -
      SP7: - - -
      SP8:

      Relevant External Links for FAM120AOS Gene

      GeneLoc Exon Structure for
      FAM120AOS
      ECgene alternative splicing isoforms for
      FAM120AOS

      Expression for FAM120AOS Gene

      mRNA expression in normal human tissues for FAM120AOS Gene

      Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for FAM120AOS Gene

      SOURCE GeneReport for Unigene cluster for FAM120AOS Gene Hs.350364

      genes like me logo Genes that share expressions with FAM120AOS: view

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM120AOS Gene

      Orthologs for FAM120AOS Gene

      This gene was present in the common ancestor of human and mouse.

      Orthologs for FAM120AOS Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia FAM120AOS 35
      • 99.74 (n)
      • 99.61 (a)
      FAM120AOS 36
      • 100 (a)
      OneToOne
      mouse
      (Mus musculus)
      Mammalia Fam120aos 16
      Species with no ortholog for FAM120AOS:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • cow (Bos Taurus)
      • dog (Canis familiaris)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for FAM120AOS Gene

      ENSEMBL:
      Gene Tree for FAM120AOS (if available)
      TreeFam:
      Gene Tree for FAM120AOS (if available)

      Paralogs for FAM120AOS Gene

      No data available for Paralogs for FAM120AOS Gene

      Variants for FAM120AOS Gene

      Sequence variations from dbSNP and Humsavar for FAM120AOS Gene

      SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
      rs1331589 -- 93,447,775(+) AGTCC(A/G)AATAT intron-variant
      rs9696476 -- 93,446,097(+) GTTCC(A/C)CCCTA downstream-variant-500B
      rs10667664 -- 93,449,493(+) TGGCA(-/TT)TTTTT intron-variant
      rs10821128 - 93,447,661(+) TTTCT(C/T)TGAGA reference, missense
      rs11791719 -- 93,449,685(+) gtttt(A/C)ccatg intron-variant

      Structural Variations from Database of Genomic Variants (DGV) for FAM120AOS Gene

      Variant ID Type Subtype PubMed ID
      esv2672054 CNV Deletion 23128226
      esv2738783 CNV Deletion 23290073
      esv2738785 CNV Deletion 23290073

      Relevant External Links for FAM120AOS Gene

      HapMap Linkage Disequilibrium report
      FAM120AOS
      Human Gene Mutation Database (HGMD)
      FAM120AOS

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM120AOS Gene

      Disorders for FAM120AOS Gene

      No disorders were found for FAM120AOS Gene.

      No data available for UniProtKB/Swiss-Prot for FAM120AOS Gene

      Publications for FAM120AOS Gene

      1. The human gene CXorf17 encodes a member of a novel family of putative transmembrane proteins: cDNA cloning and characterization of CXorf17 and its mouse ortholog orf34. (PMID: 14585507) Holden S. … Raymond F.L. (Gene 2003) 2 3
      2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
      3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
      4. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4
      5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

      Products for FAM120AOS Gene

      • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
      • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM120AOS
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for FAM120AOS
        • Block miRNA regulation of FAM120AOS using miScript Target Protectors

        Sources for FAM120AOS Gene

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