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Aliases for FAM120AOS Gene

Aliases for FAM120AOS Gene

  • Family With Sequence Similarity 120A Opposite Strand 2 3
  • C9orf10OS 3 4
  • Chromosome 9 Open Reading Frame 10 Opposite Strand 2
  • Putative FAM120A Opposite Strand Protein 3

External Ids for FAM120AOS Gene

Previous HGNC Symbols for FAM120AOS Gene

  • C9orf10OS

Previous GeneCards Identifiers for FAM120AOS Gene

  • GC09M095242
  • GC09M096208
  • GC09M065886

Summaries for FAM120AOS Gene

GeneCards Summary for FAM120AOS Gene

FAM120AOS (Family With Sequence Similarity 120A Opposite Strand) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM120AOS Gene

Genomics for FAM120AOS Gene

Regulatory Elements for FAM120AOS Gene

Genomic Location for FAM120AOS Gene

Start:
93,446,494 bp from pter
End:
93,453,592 bp from pter
Size:
7,099 bases
Orientation:
Minus strand

Genomic View for FAM120AOS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM120AOS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM120AOS Gene

Proteins for FAM120AOS Gene

  • Protein details for FAM120AOS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T036-F120S_HUMAN
    Recommended name:
    Putative FAM120A opposite strand protein
    Protein Accession:
    Q5T036
    Secondary Accessions:
    • A6NN20

    Protein attributes for FAM120AOS Gene

    Size:
    256 amino acids
    Molecular mass:
    27929 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM120AOS Gene

Proteomics data for FAM120AOS Gene at MOPED

Post-translational modifications for FAM120AOS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM120AOS Gene

No data available for DME Specific Peptides for FAM120AOS Gene

Domains for FAM120AOS Gene

Protein Domains for FAM120AOS Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM120AOS: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FAM120AOS Gene

Function for FAM120AOS Gene

miRNA for FAM120AOS Gene

miRTarBase miRNAs that target FAM120AOS

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for FAM120AOS Gene

Localization for FAM120AOS Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM120AOS Gene COMPARTMENTS Subcellular localization image for FAM120AOS gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM120AOS Gene

Pathways for FAM120AOS Gene

SuperPathways for FAM120AOS Gene

No Data Available

Interacting Proteins for FAM120AOS Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000364561%0d%0a9606.ENSP00000385269%0d%0a
Selected Interacting proteins: ENSP00000364561 for FAM120AOS Gene via STRING

Symbol External ID(s) Details
ELAVL1

Gene Ontology (GO) - Biological Process for FAM120AOS Gene

None

No data available for Pathways by source for FAM120AOS Gene

Transcripts for FAM120AOS Gene

Unigene Clusters for FAM120AOS Gene

Family with sequence similarity 120A opposite strand:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM120AOS Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c · 6d · 6e · 6f
SP1: - -
SP2: -
SP3: - -
SP4: - - - - - - -
SP5: - - -
SP6: - -
SP7: - - -
SP8:

Relevant External Links for FAM120AOS Gene

GeneLoc Exon Structure for
FAM120AOS
ECgene alternative splicing isoforms for
FAM120AOS

Expression for FAM120AOS Gene

mRNA expression in normal human tissues for FAM120AOS Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for FAM120AOS Gene

SOURCE GeneReport for Unigene cluster for FAM120AOS Gene Hs.350364

genes like me logo Genes that share expressions with FAM120AOS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM120AOS Gene

Orthologs for FAM120AOS Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for FAM120AOS Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM120AOS 35
  • 99.74 (n)
  • 99.61 (a)
FAM120AOS 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam120aos 16
Species with no ortholog for FAM120AOS:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM120AOS Gene

ENSEMBL:
Gene Tree for FAM120AOS (if available)
TreeFam:
Gene Tree for FAM120AOS (if available)

Paralogs for FAM120AOS Gene

No data available for Paralogs for FAM120AOS Gene

Variants for FAM120AOS Gene

Sequence variations from dbSNP and Humsavar for FAM120AOS Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1331589 -- 93,447,775(+) AGTCC(A/G)AATAT intron-variant
rs9696476 -- 93,446,097(+) GTTCC(A/C)CCCTA downstream-variant-500B
rs10667664 -- 93,449,493(+) TGGCA(-/TT)TTTTT intron-variant
rs10821128 - 93,447,661(+) TTTCT(C/T)TGAGA reference, missense
rs11791719 -- 93,449,685(+) gtttt(A/C)ccatg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM120AOS Gene

Variant ID Type Subtype PubMed ID
esv2672054 CNV Deletion 23128226
esv2738783 CNV Deletion 23290073
esv2738785 CNV Deletion 23290073

Relevant External Links for FAM120AOS Gene

HapMap Linkage Disequilibrium report
FAM120AOS
Human Gene Mutation Database (HGMD)
FAM120AOS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM120AOS Gene

Disorders for FAM120AOS Gene

No disorders were found for FAM120AOS Gene.

No data available for UniProtKB/Swiss-Prot for FAM120AOS Gene

Publications for FAM120AOS Gene

  1. The human gene CXorf17 encodes a member of a novel family of putative transmembrane proteins: cDNA cloning and characterization of CXorf17 and its mouse ortholog orf34. (PMID: 14585507) Holden S. … Raymond F.L. (Gene 2003) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3
  4. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM120AOS Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM120AOS
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM120AOS
    • Block miRNA regulation of FAM120AOS using miScript Target Protectors

    Sources for FAM120AOS Gene

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