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Aliases for FAM120AOS Gene

Aliases for FAM120AOS Gene

  • Family With Sequence Similarity 120A Opposite Strand 2 3
  • C9orf10OS 3 4
  • Chromosome 9 Open Reading Frame 10 Opposite Strand 2

External Ids for FAM120AOS Gene

Previous HGNC Symbols for FAM120AOS Gene

  • C9orf10OS

Previous GeneCards Identifiers for FAM120AOS Gene

  • GC09M095242
  • GC09M096208
  • GC09M065886

Summaries for FAM120AOS Gene

GeneCards Summary for FAM120AOS Gene

FAM120AOS (Family With Sequence Similarity 120A Opposite Strand) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM120AOS Gene

Genomics for FAM120AOS Gene

Regulatory Elements for FAM120AOS Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FAM120AOS Gene

Chromosome:
9
Start:
93,443,332 bp from pter
End:
93,453,592 bp from pter
Size:
10,261 bases
Orientation:
Minus strand

Genomic View for FAM120AOS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM120AOS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM120AOS Gene

Proteins for FAM120AOS Gene

  • Protein details for FAM120AOS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T036-F120S_HUMAN
    Recommended name:
    Putative FAM120A opposite strand protein
    Protein Accession:
    Q5T036
    Secondary Accessions:
    • A6NN20

    Protein attributes for FAM120AOS Gene

    Size:
    256 amino acids
    Molecular mass:
    27929 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM120AOS Gene

Proteomics data for FAM120AOS Gene at MOPED

Post-translational modifications for FAM120AOS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FAM120AOS Gene

No data available for DME Specific Peptides for FAM120AOS Gene

Domains & Families for FAM120AOS Gene

Protein Domains for FAM120AOS Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FAM120AOS: view

No data available for Gene Families and UniProtKB/Swiss-Prot for FAM120AOS Gene

Function for FAM120AOS Gene

Phenotypes for FAM120AOS Gene

GenomeRNAi human phenotypes for FAM120AOS:
genes like me logo Genes that share phenotypes with FAM120AOS: view

Animal Model Products

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM120AOS
    • Block miRNA regulation of FAM120AOS using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM120AOS

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM120AOS Gene

    Localization for FAM120AOS Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM120AOS Gene

    Pathways & Interactions for FAM120AOS Gene

    SuperPathways for FAM120AOS Gene

    No Data Available

    Interacting Proteins for FAM120AOS Gene

    STRING Interaction Network Preview (showing 1 interactants - click image to see details)
    http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000364561%0d%0a9606.ENSP00000385269%0d%0a
    Selected Interacting proteins: ENSP00000364561 for FAM120AOS Gene via STRING

    Symbol External ID(s) Details
    ELAVL1

    Gene Ontology (GO) - Biological Process for FAM120AOS Gene

    None

    No data available for Pathways by source and SIGNOR curated interactions for FAM120AOS Gene

    Drugs & Compounds for FAM120AOS Gene

    No Compound Related Data Available

    Transcripts for FAM120AOS Gene

    Unigene Clusters for FAM120AOS Gene

    Family with sequence similarity 120A opposite strand:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM120AOS
      • Block miRNA regulation of FAM120AOS using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for FAM120AOS

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for FAM120AOS Gene

      ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c · 6d · 6e · 6f
      SP1: - -
      SP2: -
      SP3: - -
      SP4: - - - - - - -
      SP5: - - -
      SP6: - -
      SP7: - - -
      SP8:

      Relevant External Links for FAM120AOS Gene

      GeneLoc Exon Structure for
      FAM120AOS
      ECgene alternative splicing isoforms for
      FAM120AOS

      Expression for FAM120AOS Gene

      mRNA expression in normal human tissues for FAM120AOS Gene

      Protein differential expression in normal tissues from HIPED for FAM120AOS Gene

      This gene is overexpressed in Adipocyte (62.1) and Bone marrow mesenchymal stem cell (6.9).

      Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for FAM120AOS Gene



      SOURCE GeneReport for Unigene cluster for FAM120AOS Gene Hs.350364

      genes like me logo Genes that share expression patterns with FAM120AOS: view

      Protein tissue co-expression partners for FAM120AOS Gene

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM120AOS Gene

      Orthologs for FAM120AOS Gene

      This gene was present in the common ancestor of human and mouse.

      Orthologs for FAM120AOS Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia FAM120AOS 35
      • 99.74 (n)
      • 99.61 (a)
      FAM120AOS 36
      • 100 (a)
      OneToOne
      mouse
      (Mus musculus)
      Mammalia Fam120aos 16
      Species with no ortholog for FAM120AOS:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • cow (Bos Taurus)
      • dog (Canis familiaris)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for FAM120AOS Gene

      ENSEMBL:
      Gene Tree for FAM120AOS (if available)
      TreeFam:
      Gene Tree for FAM120AOS (if available)

      Paralogs for FAM120AOS Gene

      No data available for Paralogs for FAM120AOS Gene

      Variants for FAM120AOS Gene

      Sequence variations from dbSNP and Humsavar for FAM120AOS Gene

      SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
      rs1331589 -- 93,447,775(+) AGTCC(A/G)AATAT intron-variant
      rs3924389 -- 93,444,717(-) GAATC(A/C/G)CTTGA utr-variant-3-prime
      rs7020585 -- 93,443,521(+) ctgtc(G/T)gTTtt utr-variant-3-prime
      rs7027881 -- 93,443,262(+) tgtct(C/G)ttgat downstream-variant-500B
      rs7028729 -- 93,443,206(+) tgctc(A/C/G)ctcta downstream-variant-500B

      Structural Variations from Database of Genomic Variants (DGV) for FAM120AOS Gene

      Variant ID Type Subtype PubMed ID
      esv2672054 CNV Deletion 23128226
      esv2738783 CNV Deletion 23290073
      esv2738785 CNV Deletion 23290073

      Variation tolerance for FAM120AOS Gene

      Residual Variation Intolerance Score: 74.58% of all genes are more intolerant (likely to be disease-causing)
      Gene Damage Index Score: 5.96; 74.67% of all genes are more intolerant (likely to be disease-causing)

      Relevant External Links for FAM120AOS Gene

      HapMap Linkage Disequilibrium report
      FAM120AOS
      Human Gene Mutation Database (HGMD)
      FAM120AOS

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM120AOS Gene

      Disorders for FAM120AOS Gene

      Relevant External Links for FAM120AOS

      Atlas of Genetics and Cytogenetics in Oncology and Haematology:
      FAM120AOS
      genes like me logo Genes that share disorders with FAM120AOS: view

      No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM120AOS Gene

      Publications for FAM120AOS Gene

      1. The human gene CXorf17 encodes a member of a novel family of putative transmembrane proteins: cDNA cloning and characterization of CXorf17 and its mouse ortholog orf34. (PMID: 14585507) Holden S. … Raymond F.L. (Gene 2003) 2 67
      2. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 67
      3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
      4. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 67
      5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

      Products for FAM120AOS Gene

      • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
      • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM120AOS
        • QuantiTect SYBR Green Assays in human,mouse,rat
        • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
        • QuantiFast Probe-based Assays in human,mouse,rat
        • Predesigned siRNA for gene silencing in human,mouse,rat for FAM120AOS
        • Block miRNA regulation of FAM120AOS using miScript Target Protectors

        Sources for FAM120AOS Gene

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