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Aliases for FAM118A Gene

Aliases for FAM118A Gene

  • Family With Sequence Similarity 118 Member A 2 3 5
  • C22orf8 3 4
  • Family With Sequence Similarity 118, Member A 2
  • Chromosome 22 Open Reading Frame 8 2
  • Protein FAM118A 3
  • BK268H5.C22.4 3

External Ids for FAM118A Gene

Previous HGNC Symbols for FAM118A Gene

  • C22orf8

Previous GeneCards Identifiers for FAM118A Gene

  • GC22P044083
  • GC22P045704
  • GC22P028649

Summaries for FAM118A Gene

GeneCards Summary for FAM118A Gene

FAM118A (Family With Sequence Similarity 118 Member A) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is FAM118B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM118A Gene

Genomics for FAM118A Gene

Regulatory Elements for FAM118A Gene

Enhancers for FAM118A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F045334 0.8 ENCODE 93.5 +26.1 26136 0.8 CTCF REST RAD21 YY1 FAM118A RIBC2 SMC1B UPK3A PIR48062 GC22M044704
GH22F045316 1.1 Ensembl ENCODE 83.3 +9.5 9533 5.0 ATF1 PKNOX1 FEZF1 ZNF121 ELK1 KLF7 SP3 JUNB TBX21 ZNF264 FAM118A ENSG00000273243 RIBC2 TTC38 PIR56516
GH22F045308 1 ENCODE 79.1 +1.1 1071 3.1 HDGF PKNOX1 ATF1 CREB3L1 WRNIP1 ARID4B SIN3A GLI4 ZNF48 ZNF2 FAM118A CDPF1 LINC00899 LINC01589 RIBC2 PIR56516
GH22F045305 0.5 ENCODE 73.4 -2.7 -2678 1.9 SOX5 SP5 HLF ZMYM3 CEBPB ZNF121 CEBPA PBX2 FAM118A RIBC2 UPK3A
GH22F045413 0.5 ENCODE 50.8 +104.8 104765 1.3 RING1 CBX3 SAP130 TAF1 ARID4B SIN3A MAX BRCA1 E2F1 POLR2A FAM118A RIBC2 TRMU LOC642648 CDPF1 ENSG00000232363
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM118A on UCSC Golden Path with GeneCards custom track

Promoters for FAM118A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085982 1132 1801 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A ZNF48 ZNF2 ZNF143 ZNF263

Genomic Location for FAM118A Gene

Chromosome:
22
Start:
45,308,968 bp from pter
End:
45,341,955 bp from pter
Size:
32,988 bases
Orientation:
Plus strand

Genomic View for FAM118A Gene

Genes around FAM118A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM118A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM118A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM118A Gene

Proteins for FAM118A Gene

  • Protein details for FAM118A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NWS6-F118A_HUMAN
    Recommended name:
    Protein FAM118A
    Protein Accession:
    Q9NWS6
    Secondary Accessions:
    • B3KWG4
    • B4DY02
    • Q5TII5
    • Q96CY3

    Protein attributes for FAM118A Gene

    Size:
    357 amino acids
    Molecular mass:
    40269 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FAM118A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM118A Gene

Post-translational modifications for FAM118A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM118A Gene

Domains & Families for FAM118A Gene

Protein Domains for FAM118A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM118A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NWS6

UniProtKB/Swiss-Prot:

F118A_HUMAN :
  • Belongs to the FAM118 family.
Family:
  • Belongs to the FAM118 family.
genes like me logo Genes that share domains with FAM118A: view

No data available for Gene Families for FAM118A Gene

Function for FAM118A Gene

Gene Ontology (GO) - Molecular Function for FAM118A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0042802 identical protein binding IPI 25416956
genes like me logo Genes that share ontologies with FAM118A: view
genes like me logo Genes that share phenotypes with FAM118A: view

Animal Model Products

miRNA for FAM118A Gene

miRTarBase miRNAs that target FAM118A

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM118A Gene

Localization for FAM118A Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM118A Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM118A Gene COMPARTMENTS Subcellular localization image for FAM118A gene
Compartment Confidence
cytoskeleton 2
cytosol 2
nucleus 2
plasma membrane 2
extracellular 1
golgi apparatus 1
lysosome 1
mitochondrion 1
vacuole 1

Gene Ontology (GO) - Cellular Components for FAM118A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FAM118A: view

Pathways & Interactions for FAM118A Gene

SuperPathways for FAM118A Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM118A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM118A Gene

Transcripts for FAM118A Gene

Unigene Clusters for FAM118A Gene

Family with sequence similarity 118, member A:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM118A Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c · 10d ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c · 13d ^ 14a · 14b · 14c ^
SP1: - - - - - - - - - -
SP2: - - - - - - - - -
SP3: - -
SP4: - - -
SP5: - - -
SP6: - -
SP7: -
SP8: -
SP9: -
SP10:
SP11: - - -

ExUns: 15
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:

Relevant External Links for FAM118A Gene

GeneLoc Exon Structure for
FAM118A
ECgene alternative splicing isoforms for
FAM118A

Expression for FAM118A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM118A Gene

Protein differential expression in normal tissues from HIPED for FAM118A Gene

This gene is overexpressed in Bone (48.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for FAM118A Gene



Protein tissue co-expression partners for FAM118A Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM118A Gene:

FAM118A

SOURCE GeneReport for Unigene cluster for FAM118A Gene:

Hs.265018
genes like me logo Genes that share expression patterns with FAM118A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM118A Gene

Orthologs for FAM118A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM118A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM118A 34 35
  • 98.97 (n)
cow
(Bos Taurus)
Mammalia FAM118A 34 35
  • 87.86 (n)
rat
(Rattus norvegicus)
Mammalia Fam118a 34
  • 87.49 (n)
dog
(Canis familiaris)
Mammalia FAM118A 34 35
  • 87.3 (n)
mouse
(Mus musculus)
Mammalia Fam118a 34 16 35
  • 86.93 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 86 (a)
OneToMany
-- 35
  • 72 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia FAM118A 35
  • 85 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FAM118A 35
  • 76 (a)
OneToOne
Species where no ortholog for FAM118A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM118A Gene

ENSEMBL:
Gene Tree for FAM118A (if available)
TreeFam:
Gene Tree for FAM118A (if available)

Paralogs for FAM118A Gene

Paralogs for FAM118A Gene

(1) SIMAP similar genes for FAM118A Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with FAM118A: view

Variants for FAM118A Gene

Sequence variations from dbSNP and Humsavar for FAM118A Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs10154441 -- 45,321,719(+) GATTT(G/T)GGAAA intron-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs10222222 -- 45,314,029(+) ATAGG(C/T)TCAGG intron-variant
rs10343 -- 45,341,606(+) GAAAC(A/G)GCTGT nc-transcript-variant, utr-variant-3-prime
rs1044742 -- 45,341,409(+) TTCGA(A/G)AGACC nc-transcript-variant, utr-variant-3-prime
rs1044744 -- 45,341,429(+) ACATT(A/G)TAAGT nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FAM118A Gene

Variant ID Type Subtype PubMed ID
dgv846e214 CNV loss 21293372
esv1005664 CNV insertion 20482838
esv1087404 CNV insertion 17803354
esv1390438 CNV insertion 17803354
esv1530597 CNV insertion 17803354
esv2052102 CNV deletion 18987734
esv2645741 CNV deletion 19546169
esv2724400 CNV deletion 23290073
esv2724401 CNV deletion 23290073
esv2758843 CNV gain 17122850
esv34218 CNV gain 17911159
esv3558241 CNV deletion 23714750
esv3647921 CNV gain 21293372
esv3647926 CNV gain 21293372
esv3647929 CNV loss 21293372
esv3647930 CNV gain 21293372
nsv1066204 CNV gain 25217958
nsv1072644 CNV deletion 25765185
nsv1143265 CNV deletion 24896259
nsv1145845 CNV deletion 26484159
nsv471210 CNV gain 18288195
nsv508741 CNV insertion 20534489
nsv514972 CNV gain+loss 21397061
nsv9921 CNV gain+loss 18304495

Variation tolerance for FAM118A Gene

Residual Variation Intolerance Score: 17.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.44; 28.14% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM118A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM118A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM118A Gene

Disorders for FAM118A Gene

Relevant External Links for FAM118A

Genetic Association Database (GAD)
FAM118A
Human Genome Epidemiology (HuGE) Navigator
FAM118A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM118A

No disorders were found for FAM118A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM118A Gene

Publications for FAM118A Gene

  1. Tissue effect on genetic control of transcript isoform variation. (PMID: 19680542) Kwan T. … Majewski J. (PLoS Genet. 2009) 3 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for FAM118A Gene

Sources for FAM118A Gene

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