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FAM110C Gene

protein-coding   GIFtS: 42
GCID: GC02M000031

Family With Sequence Similarity 110, Member C

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 4

Aliases
Family With Sequence Similarity 110, Member C1 2
Protein FAM110C2

External Ids:    HGNC: 333401   Entrez Gene: 6422732   Ensembl: ENSG000001847317   OMIM: 6113955   UniProtKB: Q1W6H93   
ORGUL members:    fRNAdb10:FR031852      
H-InvDB12:HIT000026049    
NCBI13:AL137761    

Export aliases for FAM110C gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for FAM110C Gene:
FAM110C (family with sequence similarity 110, member C) is a protein-coding gene. Diseases associated with FAM110C include thyroiditis, and prostatitis. GO annotations related to this gene include alpha-tubulin binding. An important paralog of this gene is FAM110D.

UniProtKB/Swiss-Prot: F110C_HUMAN, Q1W6H9
Function: May play a role in microtubule organization. May play a role in cell spreading and cell migration of
epithelial cells; the function may involve the AKT1 signaling pathway



fRNAdb sequence ontology for FAM110C:
ncRNA - An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000002.12  NT_005334.17  NC_018913.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the FAM110C gene promoter:
         Olf-1   Nkx2-5   POU3F2   MZF-1   AREB6   POU2F1   GCNF-1   POU2F1a   FOXO4   GCNF-2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for FAM110C

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FAM110C


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p25.3   Ensembl cytogenetic band:  2p25.3   HGNC cytogenetic band: 2p25.3

FAM110C Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FAM110C gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M000031:  view genomic region     (about GC identifiers)

Start:
38,814 bp from pter      End:
46,870 bp from pter
Size:
8,057 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: F110C_HUMAN, Q1W6H9 (See protein sequence)
Recommended Name: Protein FAM110C  
Size: 321 amino acids; 33863 Da
Subunit: Interacts with AKT1; the interaction is transient and follows AKT1 activation. Interacts with PPP2CA and
alpha-tubulin

Explore the universe of human proteins at neXtProt for FAM110C: NX_Q1W6H9

Explore proteomics data for FAM110C at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See FAM110C Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001071178.2  
    ENSEMBL proteins: 
     ENSP00000328347  

    FAM110C Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for FAM110C

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    LSBio Antibodies in human, mouse, rat for FAM110C

    FAM110C Assay Products:

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    Cloud-Clone Corp. CLIAs for FAM110C


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR025741 FAM110_C
     IPR025740 FAM110
     IPR025739 FAM110_N

    Graphical View of Domain Structure for InterPro Entry Q1W6H9

    ProtoNet protein and cluster: Q1W6H9

    UniProtKB/Swiss-Prot: F110C_HUMAN, Q1W6H9
    Similarity: Belongs to the FAM110 family


    FAM110C for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: F110C_HUMAN, Q1W6H9
    Function: May play a role in microtubule organization. May play a role in cell spreading and cell migration of
    epithelial cells; the function may involve the AKT1 signaling pathway

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI19698782
    GO:0043014alpha-tubulin binding IDA19698782
         
    FAM110C for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for FAM110C:
     Decreased homologous recombina 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for FAM110C
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    miRNA
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    miRTarBase miRNAs that target FAM110C:
    hsa-mir-192-5p (MIRT026135), hsa-mir-335-5p (MIRT016776)

    Block miRNA regulation of human, mouse, rat FAM110C using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate FAM110C (see all 27):
    hsa-miR-3660 hsa-miR-15a hsa-miR-25 hsa-miR-503 hsa-miR-103a hsa-miR-570 hsa-miR-424 hsa-miR-9
    Browse SwitchGear 3'UTR luciferase reporter plasmids
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM110C


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    F110C_HUMAN, Q1W6H9: Cytoplasm, cytoskeleton. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome.
    Cytoplasm, cytoskeleton, spindle pole. Nucleus. Note=Colocalizes with microtubules during interphase. Detected at
    the mitotic spindle poles. Colocalizes with AKT1 at the cell cortex
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytoskeleton5
    nucleus5
    cytosol2
    mitochondrion1

    Gene Ontology (GO): 5 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000922spindle pole IEA--
    GO:0005634nucleus IEA--
    GO:0005815microtubule organizing center IEA--
    GO:0005874microtubule IEA--
    GO:0005938cell cortex IDA19698782

    FAM110C for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FAM110C
    Interactions:

        Search GeneGlobe Interaction Network for FAM110C

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    3 Interacting proteins for FAM110C (Q1W6H91 ENSP000003283474) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    AKT1P317491EBI-3942563,EBI-296087
    CSNK1EENSP000003529294STRING: ENSP00000352929
    Akt1P317501EBI-3942563,EBI-298707
    About this table

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0030335positive regulation of cell migration IMP19698782
    GO:0051897positive regulation of protein kinase B signaling IMP19698782
    GO:0060491regulation of cell projection assembly IMP19698782

    FAM110C for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for FAM110C (F110C)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for FAM110C gene: 
    NM_001077710.2  

    Unigene Cluster for FAM110C:

    Family with sequence similarity 110, member C
    Hs.8379  [show with all ESTs]
    Unigene Representative Sequence: NM_001077710
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000327669(uc010yim.2) ENST00000460464 ENST00000461026
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate FAM110C (see all 27):
    hsa-miR-3660 hsa-miR-15a hsa-miR-25 hsa-miR-503 hsa-miR-103a hsa-miR-570 hsa-miR-424 hsa-miR-9
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Primer
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat FAM110C
      QuantiTect SYBR Green Assays in human, mouse, rat FAM110C
      QuantiFast Probe-based Assays in human, mouse, rat FAM110C

    Additional mRNA sequence: 

    AK302544.1 DQ431183.1 

    8 DOTS entries:

    DT.312179  DT.100724292  DT.100810669  DT.121019557  DT.99953552  DT.100662969  DT.100695309  DT.100702570 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    FAM110C expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAAAAACAAC
    FAM110C Expression
    About this image


    FAM110C expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 6) fully expand
     
     Ovary (Reproductive System)    fully expand to see all 2 entries
             Cumulus Cells Antral Follicle
             Secondary follicles
     
     Inner Cell Mass (Early Embryonic Tissues)    fully expand to see all 2 entries
             Human embryonic stem cells (family)
     
     Blood (Cardiovascular System)    fully expand to see all 2 entries
             Hematopoietic Stem Cells Liver Bud
     
     Adipose (Muscoskeletal System)
             Visceral White Adipocytes Visceral White Adipose
     
     Liver (Hepatobiliary System)
             Hematopoietic Stem Cells Liver Bud
    FAM110C Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    FAM110C Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.8379

    UniProtKB/Swiss-Prot: F110C_HUMAN, Q1W6H9
    Tissue specificity: Detected in stomach, thyroid, trachea, adrenal gland and testis, and at low levels in
    prostate, ovary, intestine, colon, spinal cord and lymph node

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FAM110C

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for FAM110C gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Fam110c1 , 5 family with sequence similarity 110, member C1, 5 71.92(n)1
    69.96(a)1
      12 (13.06 cM)5
    1049431  NM_027828.21  NP_082104.21 
     310739685 
    chicken
    (Gallus gallus)
    Aves FAM110C6
    family with sequence similarity 110, member C
    39(a)
    1 ↔ 1
    3(91380717-91381817)
    lizard
    (Anolis carolinensis)
    Reptilia FAM110C6
    family with sequence similarity 110, member C
    39(a)
    1 ↔ 1
    1(159915077-159916168)
    zebrafish
    (Danio rerio)
    Actinopterygii FAM110C6
    family with sequence similarity 110, member C
    29(a)
    1 ↔ 1
    23(35537531-35543081) ENSDARG00000096989


    ENSEMBL Gene Tree for FAM110C (if available)
    TreeFam Gene Tree for FAM110C (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for FAM110C gene
    FAM110D2  FAM110A2  FAM110B2  

    FAM110C for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for FAM110C (see all 193)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1490167311,2
    --38332(+) ATGATC/TAGGCT 1 -- ds50010--------
    rs1148618671,2
    F--38528(+) AAAAAT/AATTTT 1 -- ds50011Minor allele frequency- A:0.03WA 118
    rs731386001,2
    C,F--38648(+) TGCCAC/TGCAAC 1 -- ds50013Minor allele frequency- T:0.50WA CSA 6
    rs1481000131,2
    C--38714(+) AGAGAA/CCACTC 1 -- ds50010--------
    rs1120741031,2
    C--38734(+) GGGAG-/AAAAAC 1 -- ds50011Minor allele frequency- A:0.50CSA 2
    rs731386011,2
    C--38749(+) GACAAG/TGAACT 1 -- ds50011Minor allele frequency- T:0.50WA 2
    rs1166317331,2
    C,F--38832(+) AAAATA/GCTTTA 1 -- ut311Minor allele frequency- G:0.01WA 118
    rs115424781,2
    C,F,H--38938(+) TACTAA/CTGTTT 1 -- ut3121Minor allele frequency- C:0.10NS EA WA NA 2760
    rs1438895091,2
    C--39174(+) ATCCCA/GACTGA 1 -- ut310--------
    rs116766241,2
    H--39317(+) tgcagA/Tggtgc 1 -- ut310--------

    HapMap Linkage Disequilibrium report for FAM110C (38814 - 46870 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for FAM110C:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2751887CNV Loss17911159
    nsv873521CNV Gain21882294
    dgv4033n71CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing FAM110C
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 611395OMIM information:   
    2 diseases for FAM110C:    
    About MalaCards
    thyroiditis    prostatitis


    FAM110C for disorders           About GeneDecksing

    Genetic Association Database (GAD): FAM110C

    Export disorders for FAM110C gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for FAM110C gene, integrated from 10 sources (see all 11):
    (articles sorted by number of sources associating them with FAM110C)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Evidence for the involvement of FAM110C protein in cell spreading and migration. (PubMed id 19698782)1, 2, 3 Hauge H.... Aasheim H.C. (Cell. Signal. 2009)
    2. Characterization of the FAM110 gene family. (PubMed id 17499476)1, 2, 3 Hauge H.... Aasheim H.-C. (Genomics 2007)
    3. Whole genome association scan for genetic polymorphisms influencing information processing speed. (PubMed id 21130836)1, 4 Luciano M....Deary I.J. (Biol Psychol 2011)
    4. Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS. (PubMed id 23455922)1 Varjosalo M....Superti-Furga G. (Nat. Methods 2013)
    5. A genome-wide association study of attempted suicide. (PubMed id 21423239)4 Willour V.L....Potash J.B. (Mol. Psychiatry 2012)
    6. Toward an understanding of the protein interaction network of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (Mol. Syst. Biol. 2011)
    7. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PubMed id 17903299)4 Kathiresan S....Cupples L.A. (BMC Med. Genet. 2007)
    8. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W.... Wilson R.K. (Nature 2005)
    9. (PubMed id 15103394)10 
    10. (PubMed id 17451645)10 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 642273 HGNC: 33340 Ensembl:ENSG00000184731 euGenes: HUgn642273 ECgene: FAM110C
    H-InvDB: FAM110C

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for FAM110C Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for FAM110C gene:
    Search GeneIP for patents involving FAM110C

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