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Aliases for FAM106CP Gene

Subcategory (RNA class) for FAM106CP Gene

lncRNA

Aliases for FAM106CP Gene

  • Family With Sequence Similarity 106, Member C, Pseudogene 2 3
  • FAM106C 3 4
  • FAM106C Pseudogene 4

External Ids for FAM106CP Gene

ORGUL Members for FAM106CP Gene

Previous HGNC Symbols for FAM106CP Gene

  • FAM106C

Previous GeneCards Identifiers for FAM106CP Gene

  • GC17P016694

Summaries for FAM106CP Gene

GeneCards Summary for FAM106CP Gene

FAM106CP (Family With Sequence Similarity 106, Member C, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM106CP Gene

Genomics for FAM106CP Gene

Genomic Location for FAM106CP Gene

Start:
16,788,743 bp from pter
End:
16,790,501 bp from pter
Size:
1,759 bases
Orientation:
Plus strand

Genomic View for FAM106CP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM106CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM106CP Gene

No data available for Regulatory Elements for FAM106CP Gene

Proteins for FAM106CP Gene

  • Protein details for FAM106CP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CH98-F106C_HUMAN
    Recommended name:
    Putative protein FAM106C
    Protein Accession:
    P0CH98
    Secondary Accessions:

    Protein attributes for FAM106CP Gene

    Size:
    169 amino acids
    Molecular mass:
    18676 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM106CP Gene

Proteomics data for FAM106CP Gene at MOPED

Post-translational modifications for FAM106CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAM106CP Gene

Domains for FAM106CP Gene

Protein Domains for FAM106CP Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM106CP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0CH98

UniProtKB/Swiss-Prot:

F106C_HUMAN :
  • P0CH98
Family:
  • Belongs to the FAM106 family.
genes like me logo Genes that share domains with FAM106CP: view

No data available for Gene Families for FAM106CP Gene

Function for FAM106CP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FAM106CP Gene

Localization for FAM106CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM106CP Gene

Pathways for FAM106CP Gene

SuperPathways for FAM106CP Gene

No Data Available

Interacting Proteins for FAM106CP Gene

Gene Ontology (GO) - Biological Process for FAM106CP Gene

None

No data available for Pathways by source for FAM106CP Gene

Transcripts for FAM106CP Gene

mRNA/cDNA for FAM106CP Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM106CP Gene

Family with sequence similarity 106, member C pseudogene:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM106CP

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM106CP Gene

No ASD Table

Relevant External Links for FAM106CP Gene

GeneLoc Exon Structure for
FAM106CP
ECgene alternative splicing isoforms for
FAM106CP

Expression for FAM106CP Gene

SOURCE GeneReport for Unigene cluster for FAM106CP Gene Hs.712114

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for FAM106CP Gene

Orthologs for FAM106CP Gene

Evolution for FAM106CP Gene

ENSEMBL:
Gene Tree for FAM106CP (if available)
TreeFam:
Gene Tree for FAM106CP (if available)

No data available for Orthologs for FAM106CP Gene

Paralogs for FAM106CP Gene

Selected SIMAP similar genes for FAM106CP Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM106CP: view

No data available for Paralogs for FAM106CP Gene

Variants for FAM106CP Gene

Structural Variations from Database of Genomic Variants (DGV) for FAM106CP Gene

Variant ID Type Subtype PubMed ID
dgv928e1 CNV Complex 17122850
dgv3064n71 CNV Gain 21882294
dgv929e1 CNV Complex 17122850
esv2635467 CNV Loss 19546169
nsv833378 CNV Gain 17160897
dgv3065n71 CNV Gain 21882294
nsv442737 CNV CNV 18776908
nsv833379 CNV Gain 17160897

Relevant External Links for FAM106CP Gene

HapMap Linkage Disequilibrium report
FAM106CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for FAM106CP Gene

Disorders for FAM106CP Gene

No disorders were found for FAM106CP Gene.

No data available for UniProtKB/Swiss-Prot for FAM106CP Gene

Publications for FAM106CP Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FAM106CP Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FAM106CP
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FAM106CP
    • Block miRNA regulation of FAM106CP using miScript Target Protectors

    Sources for FAM106CP Gene

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