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Aliases for FAM106CP Gene

Subcategory (RNA class) for FAM106CP Gene

lncRNA

Aliases for FAM106CP Gene

  • Family With Sequence Similarity 106 Member C, Pseudogene 2 3 5
  • FAM106C Pseudogene 3 4
  • FAM106C 3 4
  • Family With Sequence Similarity 106, Member C, Pseudogene 2
  • Putative Protein FAM106C 3
  • FLJ11800 Related 3

External Ids for FAM106CP Gene

ORGUL Members for FAM106CP Gene

Previous HGNC Symbols for FAM106CP Gene

  • FAM106C

Previous GeneCards Identifiers for FAM106CP Gene

  • GC17P016694

Summaries for FAM106CP Gene

GeneCards Summary for FAM106CP Gene

FAM106CP (Family With Sequence Similarity 106 Member C, Pseudogene) is a Protein Coding gene, and is affiliated with the lncRNA class.

Additional gene information for FAM106CP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM106CP Gene

Genomics for FAM106CP Gene

Regulatory Elements for FAM106CP Gene

Enhancers for FAM106CP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H016406 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -381.0 -381033 2 HDGF ZNF493 ZFP64 SIN3A FEZF1 YBX1 ZNF121 GLIS2 ZNF207 KLF7 PIGL PPIAP53 NCOR1 ENSG00000266538 TVP23C MPRIP-AS1 LOC644422 ZNF286A ENSG00000264729 MEIS3P1
GH17H016385 1.6 Ensembl ENCODE dbSUPER 12.2 -401.9 -401870 2 ATF1 FOXA2 ARID4B SIN3A DMAP1 GLI4 ZNF2 ZNF121 ELK1 ZNF143 PIGL ENSG00000266538 ENSG00000264729 LOC644422 TVP23C PPIAP53 ENSG00000264765 NOS2P4 COTL1P1 ENSG00000265853
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAM106CP on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM106CP Gene

Chromosome:
17
Start:
16,788,743 bp from pter
End:
16,790,501 bp from pter
Size:
1,759 bases
Orientation:
Plus strand

Genomic View for FAM106CP Gene

Genes around FAM106CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM106CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM106CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM106CP Gene

Proteins for FAM106CP Gene

  • Protein details for FAM106CP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0CH98-F106C_HUMAN
    Recommended name:
    Putative protein FAM106C
    Protein Accession:
    P0CH98

    Protein attributes for FAM106CP Gene

    Size:
    169 amino acids
    Molecular mass:
    18676 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM106CP Gene

Post-translational modifications for FAM106CP Gene

No Post-translational modifications

Other Protein References for FAM106CP Gene

REFSEQ proteins:

No data available for DME Specific Peptides for FAM106CP Gene

Domains & Families for FAM106CP Gene

Protein Domains for FAM106CP Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM106CP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P0CH98

UniProtKB/Swiss-Prot:

F106C_HUMAN :
  • Belongs to the FAM106 family.
Family:
  • Belongs to the FAM106 family.
genes like me logo Genes that share domains with FAM106CP: view

No data available for Gene Families for FAM106CP Gene

Function for FAM106CP Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FAM106CP
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM106CP Gene

Localization for FAM106CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FAM106CP Gene

Pathways & Interactions for FAM106CP Gene

SuperPathways for FAM106CP Gene

No Data Available

Interacting Proteins for FAM106CP Gene

Gene Ontology (GO) - Biological Process for FAM106CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM106CP Gene

Drugs & Compounds for FAM106CP Gene

No Compound Related Data Available

Transcripts for FAM106CP Gene

mRNA/cDNA for FAM106CP Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM106CP Gene

Family with sequence similarity 106, member C pseudogene:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for FAM106CP
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for FAM106CP Gene

No ASD Table

Relevant External Links for FAM106CP Gene

GeneLoc Exon Structure for
FAM106CP
ECgene alternative splicing isoforms for
FAM106CP

Expression for FAM106CP Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM106CP Gene:

FAM106CP

SOURCE GeneReport for Unigene cluster for FAM106CP Gene:

Hs.712114
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAM106CP Gene

Orthologs for FAM106CP Gene

Evolution for FAM106CP Gene

ENSEMBL:
Gene Tree for FAM106CP (if available)
TreeFam:
Gene Tree for FAM106CP (if available)

No data available for Orthologs for FAM106CP Gene

Paralogs for FAM106CP Gene

(2) SIMAP similar genes for FAM106CP Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FAM106CP: view

No data available for Paralogs for FAM106CP Gene

Variants for FAM106CP Gene

Sequence variations from dbSNP and Humsavar for FAM106CP Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1004374544 -- 16,789,211(+) CATAT(A/G)CATAT intron-variant, nc-transcript-variant
rs1005410882 -- 16,787,291(+) TTTGT(C/T)TTCCT intron-variant, upstream-variant-2KB
rs1007271821 -- 16,788,453(+) ACTCA(C/G/T)GCCTG intron-variant, upstream-variant-2KB
rs1011623811 -- 16,790,968(+) CCCCA(C/T)CTCTA intron-variant, downstream-variant-500B
rs1012964294 -- 16,789,768(+) CTTTC(A/G)TTTAC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM106CP Gene

Variant ID Type Subtype PubMed ID
dgv5477n54 CNV loss 21841781
dgv5478n54 CNV loss 21841781
esv2635467 CNV loss 19546169
esv2758676 CNV gain+loss 17122850
esv3640115 CNV gain 21293372
nsv1128756 CNV duplication 24896259
nsv1141300 CNV duplication 24896259
nsv1160457 CNV duplication 26073780
nsv442737 CNV gain 18776908
nsv833378 CNV gain 17160897
nsv833379 CNV gain 17160897
nsv953837 CNV duplication 24416366
nsv962269 CNV duplication 23825009

Relevant External Links for FAM106CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM106CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAM106CP Gene

Disorders for FAM106CP Gene

Relevant External Links for FAM106CP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM106CP

No disorders were found for FAM106CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM106CP Gene

Publications for FAM106CP Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 3 4 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  3. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park SS … Lupski JR (Genome research 2002) 3 60

Products for FAM106CP Gene

Sources for FAM106CP Gene

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