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Aliases for FAM106A Gene

Subcategory (RNA class) for FAM106A Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for FAM106A Gene

  • Family With Sequence Similarity 106 Member A 2 3 5
  • Family With Sequence Similarity 106, Member A 2

External Ids for FAM106A Gene

Previous GeneCards Identifiers for FAM106A Gene

  • GC17M018369
  • GC17M018428
  • GC17M018429
  • GC17M018474
  • GC17M018575
  • GC17M018642
  • GC17M018677
  • GC17M018717

Summaries for FAM106A Gene

GeneCards Summary for FAM106A Gene

FAM106A (Family With Sequence Similarity 106 Member A) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM106A Gene

Genomics for FAM106A Gene

Regulatory Elements for FAM106A Gene

Enhancers for FAM106A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F019052 0.5 Ensembl 65.3 -525.9 -525855 0.2 ZNF493 ZNF140 ZNF266 ZNF704 ZNF514 ZEB1 ZNF791 RBAK ZNF354C ZNF138 DRG2 FOXO3B ENSG00000264885 FAM106A SMCR8 ENSG00000262202 ZNF286B TVP23B ENSG00000264932 ENSG00000273018
GH17F019053 0.6 Ensembl 65.3 -526.3 -526255 0.2 ZNF493 ZFP64 ZNF140 ZNF266 ZNF704 ZNF514 ZEB1 ZNF791 RBAK ZNF354C DRG2 FOXO3B ENSG00000264885 FAM106A SMCR8 ENSG00000262202 ZNF286B TVP23B ENSG00000264932 ENSG00000273018
GH17F017590 0.8 FANTOM5 ENCODE 26.2 +934.9 934878 3.7 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 LOC100419436 FAM106A SMCR8 LOC644422 DRG2 ACTG1P24 UPF3AP1 PEMT MPRIP-AS1 USP32P2
GH17F017970 0.7 FANTOM5 ENCODE 21.2 +554.8 554783 3.1 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207 FOXO3B SMCR8 FAM106A DRG2 TOM1L2 ZNF286B USP32P2 ENSG00000264885 DRC3 ENSG00000250111
GH17F018181 1.1 FANTOM5 ENCODE 20.1 +341.8 341767 8.0 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SMCR8 FOXO3B MYO15A DRG2 LLGL1 ZNF286B MIEF2 FAM106A NOS2P2 ENSG00000262202
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAM106A on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM106A Gene

Chromosome:
17
Start:
18,524,566 bp from pter
End:
18,526,846 bp from pter
Size:
2,281 bases
Orientation:
Minus strand

Genomic View for FAM106A Gene

Genes around FAM106A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM106A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM106A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM106A Gene

Proteins for FAM106A Gene

  • Protein details for FAM106A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4KMX7-F106A_HUMAN
    Recommended name:
    Protein FAM106A
    Protein Accession:
    Q4KMX7
    Secondary Accessions:
    • Q9HAD1

    Protein attributes for FAM106A Gene

    Size:
    169 amino acids
    Molecular mass:
    18795 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FAM106A Gene

Post-translational modifications for FAM106A Gene

No Post-translational modifications

Other Protein References for FAM106A Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for FAM106A Gene

Domains & Families for FAM106A Gene

Protein Domains for FAM106A Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM106A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q4KMX7

UniProtKB/Swiss-Prot:

F106A_HUMAN :
  • Belongs to the FAM106 family.
Family:
  • Belongs to the FAM106 family.
genes like me logo Genes that share domains with FAM106A: view

No data available for Gene Families for FAM106A Gene

Function for FAM106A Gene

genes like me logo Genes that share phenotypes with FAM106A: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAM106A Gene

Localization for FAM106A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAM106A Gene

Pathways & Interactions for FAM106A Gene

SuperPathways for FAM106A Gene

No Data Available

Interacting Proteins for FAM106A Gene

Gene Ontology (GO) - Biological Process for FAM106A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM106A Gene

Transcripts for FAM106A Gene

mRNA/cDNA for FAM106A Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAM106A Gene

Family with sequence similarity 106, member A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM106A Gene

No ASD Table

Relevant External Links for FAM106A Gene

GeneLoc Exon Structure for
FAM106A
ECgene alternative splicing isoforms for
FAM106A

Expression for FAM106A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FAM106A Gene

NURSA nuclear receptor signaling pathways regulating expression of FAM106A Gene:

FAM106A

SOURCE GeneReport for Unigene cluster for FAM106A Gene:

Hs.674403
genes like me logo Genes that share expression patterns with FAM106A: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAM106A Gene

Orthologs for FAM106A Gene

Evolution for FAM106A Gene

ENSEMBL:
Gene Tree for FAM106A (if available)
TreeFam:
Gene Tree for FAM106A (if available)

No data available for Orthologs for FAM106A Gene

Paralogs for FAM106A Gene

(2) SIMAP similar genes for FAM106A Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for FAM106A Gene

genes like me logo Genes that share paralogs with FAM106A: view

No data available for Paralogs for FAM106A Gene

Variants for FAM106A Gene

Sequence variations from dbSNP and Humsavar for FAM106A Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs112000658 -- 18,528,018(+) TGTCA(C/G)TCAGT upstream-variant-2KB
rs112491548 -- 18,527,711(+) TCTTA(C/T)AGCTG upstream-variant-2KB
rs113434854 -- 18,525,972(+) AAATG(A/C)CACTT nc-transcript-variant
rs138951191 -- 18,525,481(+) ATACA(C/G)AAGAG nc-transcript-variant
rs140484047 -- 18,524,403(+) TGTCT(C/G)AAAAA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FAM106A Gene

Variant ID Type Subtype PubMed ID
dgv27e213 CNV loss 24956385
dgv3110n100 CNV gain 25217958
dgv3111n100 CNV gain 25217958
dgv3112n100 CNV gain+loss 25217958
dgv3113n100 CNV loss 25217958
dgv3114n100 CNV gain+loss 25217958
dgv3115n100 CNV gain 25217958
dgv5489n54 CNV loss 21841781
dgv55e203 CNV gain+loss 21179565
esv2670394 CNV deletion 23128226
esv2758677 CNV gain+loss 17122850
esv3640153 CNV loss 21293372
nsv1121932 CNV deletion 24896259
nsv1144794 CNV deletion 24896259
nsv1160460 OTHER complex 26073780
nsv1160461 CNV deletion 26073780
nsv428333 CNV gain 18775914
nsv442738 CNV gain+loss 18776908
nsv469661 CNV gain 16826518
nsv511052 OTHER complex 20534489
nsv511593 CNV loss 21212237
nsv827913 CNV gain 20364138
nsv833388 CNV loss 17160897
nsv9504 CNV gain+loss 18304495
nsv953840 CNV deletion 24416366
nsv962275 CNV duplication 23825009

Variation tolerance for FAM106A Gene

Gene Damage Index Score: 0.06; 1.45% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM106A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAM106A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM106A Gene

Disorders for FAM106A Gene

Relevant External Links for FAM106A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM106A

No disorders were found for FAM106A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM106A Gene

Publications for FAM106A Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4 64
  2. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAM106A Gene

Sources for FAM106A Gene

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