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Aliases for FAM104A Gene

Aliases for FAM104A Gene

  • Family With Sequence Similarity 104, Member A 2 3

External Ids for FAM104A Gene

Previous GeneCards Identifiers for FAM104A Gene

  • GC17M068716
  • GC17M071203
  • GC17M066612

Summaries for FAM104A Gene

GeneCards Summary for FAM104A Gene

FAM104A (Family With Sequence Similarity 104, Member A) is a Protein Coding gene. An important paralog of this gene is FAM104B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM104A Gene

Genomics for FAM104A Gene

Regulatory Elements for FAM104A Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FAM104A Gene

Chromosome:
17
Start:
73,207,353 bp from pter
End:
73,236,753 bp from pter
Size:
29,401 bases
Orientation:
Minus strand

Genomic View for FAM104A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FAM104A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM104A Gene

Proteins for FAM104A Gene

  • Protein details for FAM104A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969W3-F104A_HUMAN
    Recommended name:
    Protein FAM104A
    Protein Accession:
    Q969W3
    Secondary Accessions:
    • B4E339

    Protein attributes for FAM104A Gene

    Size:
    186 amino acids
    Molecular mass:
    19484 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH11054.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH25238.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB55292.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC11183.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for FAM104A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM104A Gene

Proteomics data for FAM104A Gene at MOPED

Post-translational modifications for FAM104A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAM104A Gene

Domains & Families for FAM104A Gene

Protein Domains for FAM104A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FAM104A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q969W3

UniProtKB/Swiss-Prot:

F104A_HUMAN :
  • Belongs to the FAM104 family.
Family:
  • Belongs to the FAM104 family.
genes like me logo Genes that share domains with FAM104A: view

No data available for Gene Families for FAM104A Gene

Function for FAM104A Gene

Gene Ontology (GO) - Molecular Function for FAM104A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with FAM104A: view
genes like me logo Genes that share phenotypes with FAM104A: view

Animal Model Products

CRISPR Products

miRNA for FAM104A Gene

miRTarBase miRNAs that target FAM104A

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM104A

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for FAM104A Gene

Localization for FAM104A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM104A Gene COMPARTMENTS Subcellular localization image for FAM104A gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FAM104A Gene

Pathways & Interactions for FAM104A Gene

SuperPathways for FAM104A Gene

No Data Available

Interacting Proteins for FAM104A Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000384832%0d%0a9606.ENSP00000351777%0d%0a
Selected Interacting proteins: Q969W3-F104A_HUMAN ENSP00000384832 for FAM104A Gene via UniProtKB STRING

Gene Ontology (GO) - Biological Process for FAM104A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM104A Gene

Drugs & Compounds for FAM104A Gene

No Compound Related Data Available

Transcripts for FAM104A Gene

Unigene Clusters for FAM104A Gene

Family with sequence similarity 104, member A:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FAM104A

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAM104A Gene

No ASD Table

Relevant External Links for FAM104A Gene

GeneLoc Exon Structure for
FAM104A
ECgene alternative splicing isoforms for
FAM104A

Expression for FAM104A Gene

mRNA expression in normal human tissues for FAM104A Gene

mRNA differential expression in normal tissues according to GTEx for FAM104A Gene

This gene is overexpressed in Testis (x13.0).

Protein differential expression in normal tissues from HIPED for FAM104A Gene

This gene is overexpressed in CD8 Tcells (38.2), Rectum (14.2), CD4 Tcells (9.7), and Blymphocyte (6.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FAM104A Gene



SOURCE GeneReport for Unigene cluster for FAM104A Gene Hs.741276

genes like me logo Genes that share expression patterns with FAM104A: view

Protein tissue co-expression partners for FAM104A Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for FAM104A Gene

Orthologs for FAM104A Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM104A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FAM104A 35
  • 85.45 (n)
  • 84.53 (a)
MGC128049 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FAM104A 35
  • 83.05 (n)
  • 80.34 (a)
FAM104A 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam104a 35
  • 76.99 (n)
  • 72.28 (a)
Fam104a 16
Fam104a 36
  • 78 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam104a 35
  • 82.51 (n)
  • 80.33 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 82 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 80 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia FAM104A 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves FAM104A 35
  • 72.06 (n)
  • 69.52 (a)
FAM104A 36
  • 67 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 66 (a)
OneToMany
Species with no ortholog for FAM104A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FAM104A Gene

ENSEMBL:
Gene Tree for FAM104A (if available)
TreeFam:
Gene Tree for FAM104A (if available)

Paralogs for FAM104A Gene

Paralogs for FAM104A Gene

(1) SIMAP similar genes for FAM104A Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with FAM104A: view

Variants for FAM104A Gene

Sequence variations from dbSNP and Humsavar for FAM104A Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs8387 -- 73,209,715(-) ATCAA(C/T)AGCCC synonymous-codon, reference, missense
rs14098 -- 73,209,682(-) GGCAG(C/T)TTGAG reference, synonymous-codon, missense
rs15072 -- 73,209,142(+) TTGAA(A/T)AAAAA utr-variant-3-prime
rs935714 -- 73,212,014(+) caatc(A/G)gaatg intron-variant
rs1080345 -- 73,223,797(+) caaca(C/T)agcaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM104A Gene

Variant ID Type Subtype PubMed ID
nsv833534 CNV Loss 17160897
esv2186746 CNV Deletion 18987734
esv2667654 CNV Deletion 23128226
esv2562139 CNV Deletion 19546169

Variation tolerance for FAM104A Gene

Residual Variation Intolerance Score: 67.39% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.29; 25.65% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM104A Gene

HapMap Linkage Disequilibrium report
FAM104A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM104A Gene

Disorders for FAM104A Gene

Relevant External Links for FAM104A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM104A
genes like me logo Genes that share disorders with FAM104A: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM104A Gene

Publications for FAM104A Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
  3. LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells. (PMID: 23443559) Fogeron M.L. … Lange B.M. (Nat Commun 2013) 67
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 67
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67

Products for FAM104A Gene

Sources for FAM104A Gene

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