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Aliases for FAHD2CP Gene

Aliases for FAHD2CP Gene

  • Fumarylacetoacetate Hydrolase Domain Containing 2C, Pseudogene 2 3 5

External Ids for FAHD2CP Gene

Previous GeneCards Identifiers for FAHD2CP Gene

  • GC02P096677

Summaries for FAHD2CP Gene

GeneCards Summary for FAHD2CP Gene

FAHD2CP (Fumarylacetoacetate Hydrolase Domain Containing 2C, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAHD2CP Gene

Genomics for FAHD2CP Gene

Regulatory Elements for FAHD2CP Gene

Enhancers for FAHD2CP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F096091 0.4 Ensembl 17.9 +81.7 81650 1.2 CTCF KLF1 ZNF792 ZFP64 KLF17 ZIC2 RAD21 ZNF316 NFE2 MAFK FAHD2CP SNRNP200 ADRA2B ASTL DUSP2 GC02P096109 LOC105373494
GH02F096117 0.2 ENCODE 16 +106.1 106076 0.2 SP3 SP2 ZBTB8A ZFHX2 POLR2A ZNF610 GLIS1 KLF9 ZBTB26 KDM6A FAHD2CP ADRA2B ASTL
GH02F096092 0.2 ENCODE 4.8 +80.7 80677 0.2 ZNF664 ZNF316 NFE2 EMSY NFE2L2 ADRA2B ASTL FAHD2CP GC02P096109 LOC105373494
GH02F096011 0.9 ENCODE 0.8 +0.7 697 0.2 CTCF ZBTB48 NRF1 FOS ATF2 ADRA2B ASTL DUSP2 FAHD2CP GC02P096014
GH02F096009 0.6 ENCODE 0.8 -0.2 -207 1.5 HDAC1 PKNOX1 ATF1 GLIS2 FOS CREM SP3 IKZF1 GLIS1 NBN ADRA2B DUSP2 ASTL FAHD2CP RN7SL210P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FAHD2CP on UCSC Golden Path with GeneCards custom track

Promoters for FAHD2CP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000677006 249 1600 HDAC1 PKNOX1 ATF1 GLIS2 FOS CREM SP3 IKZF1 GLIS1 NBN

Genomic Location for FAHD2CP Gene

Chromosome:
2
Start:
96,010,551 bp from pter
End:
96,023,380 bp from pter
Size:
12,830 bases
Orientation:
Plus strand

Genomic View for FAHD2CP Gene

Genes around FAHD2CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAHD2CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAHD2CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAHD2CP Gene

Proteins for FAHD2CP Gene

Post-translational modifications for FAHD2CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAHD2CP Gene

Domains & Families for FAHD2CP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAHD2CP Gene

Function for FAHD2CP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAHD2CP Gene

Localization for FAHD2CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAHD2CP Gene

Pathways & Interactions for FAHD2CP Gene

SuperPathways for FAHD2CP Gene

No Data Available

Interacting Proteins for FAHD2CP Gene

Gene Ontology (GO) - Biological Process for FAHD2CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAHD2CP Gene

Transcripts for FAHD2CP Gene

mRNA/cDNA for FAHD2CP Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FAHD2CP Gene

Fumarylacetoacetate hydrolase domain containing 2C, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAHD2CP Gene

No ASD Table

Relevant External Links for FAHD2CP Gene

GeneLoc Exon Structure for
FAHD2CP
ECgene alternative splicing isoforms for
FAHD2CP

Expression for FAHD2CP Gene

mRNA expression in normal human tissues for FAHD2CP Gene

mRNA differential expression in normal tissues according to GTEx for FAHD2CP Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of FAHD2CP Gene:

FAHD2CP

SOURCE GeneReport for Unigene cluster for FAHD2CP Gene:

Hs.720108
genes like me logo Genes that share expression patterns with FAHD2CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FAHD2CP Gene

Orthologs for FAHD2CP Gene

Evolution for FAHD2CP Gene

ENSEMBL:
Gene Tree for FAHD2CP (if available)
TreeFam:
Gene Tree for FAHD2CP (if available)

No data available for Orthologs for FAHD2CP Gene

Paralogs for FAHD2CP Gene

No data available for Paralogs for FAHD2CP Gene

Variants for FAHD2CP Gene

Sequence variations from dbSNP and Humsavar for FAHD2CP Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1045320 -- 96,015,140(+) TACCA(C/T)GGTCG intron-variant, reference, missense
rs1045321 -- 96,015,173(+) TCACA(C/T)GGCCA intron-variant, reference, missense
rs1045323 -- 96,015,175(+) ACATG(A/G)CCAGA intron-variant, reference, stop-gained
rs111682361 -- 96,011,516(+) GACTT(A/G)GATTC intron-variant, upstream-variant-2KB
rs111822482 -- 96,014,598(+) GGAAA(A/T)CTCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAHD2CP Gene

Variant ID Type Subtype PubMed ID
dgv607e201 CNV deletion 23290073
esv3425717 CNV duplication 20981092
esv3575268 CNV gain 25503493
esv3591652 OTHER inversion 21293372
esv5003 OTHER complex 18987735
esv993391 CNV gain 20482838
nsv1003371 CNV gain 25217958
nsv1004486 CNV gain 25217958
nsv1135873 CNV deletion 24896259
nsv499420 OTHER inversion 21111241
nsv516044 CNV gain+loss 19592680
nsv7322 OTHER inversion 18451855
nsv818073 CNV gain 17921354
nsv961454 CNV duplication 23825009

Relevant External Links for FAHD2CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAHD2CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAHD2CP Gene

Disorders for FAHD2CP Gene

Relevant External Links for FAHD2CP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAHD2CP

No disorders were found for FAHD2CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAHD2CP Gene

Publications for FAHD2CP Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for FAHD2CP Gene

Sources for FAHD2CP Gene

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