FABP9 Gene
protein-coding GIFtS: 38
GCID: GC08M082370
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fatty acid binding protein 9, testis
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Aliases
for FABP9 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Fatty Acid Binding Protein 9, Testis1 2 | | Testis-Type Fatty Acid-Binding Protein2 3 | | T-FABP1 2 3 | | TLBP2 3 | | PERF1 2 | | Fatty Acid-Binding Protein 92 | | PERF151 2 | | Lipid-Binding Protein2 | | Testis Lipid-Binding Protein2 3 | | Testis Lipid Binding Protein2 |
Export aliases for FABP9 gene to outside databasesPrevious GC identifers: GC00U990100 GC08U900525 GC08M082534 GC08M077860 |
Summaries
for FABP9 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for FABP9 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000008.10 NC_018919.1 NT_008183.19
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the FABP9 gene promoter:
C/EBPbeta Sp1 AP-1 ATF-2 LUN-1 Gfi-1 POU2F1 POU2F1a FOXO4 c-Jun
Other transcription factors
Search SABiosciences Chromatin IP Primers for FABP9
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FABP9 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 8q21.13 Ensembl cytogenetic band: 8q21.13 HGNC cytogenetic band: 8q21.13FABP9 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08M082370: view genomic region
(about GC identifiers)
Start:
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82,370,576 bp from pter |
End:
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82,373,814 bp from pter |
Size:
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3,239 bases |
Orientation:
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minus strand |
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Proteins
for FABP9 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: FABP9_HUMAN, Q0Z7S8 (See
protein sequence)Recommended Name: Fatty acid-binding protein 9 Size: 132 amino acids; 15093 Da
Subcellular location: Cytoplasm (Potential)
1 PDB 3D structure from  and Proteopedia  for FABP9:4A60 (3D)
Explore the universe of human proteins at neXtProt for FABP9: NX_Q0Z7S8
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q0Z7S8
FABP9 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001073995.1
ENSEMBL proteins: ENSP00000368362
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001669 | acrosomal vesicle |
IEA | -- |
FABP9 for ontologies About GeneDecksing
FABP9 Antibody Products:
Assay Products for FABP9: |
Protein
Domains /
Families
for FABP9 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
FABP9 for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q0Z7S8ProtoNet protein and cluster: Q0Z7S8 1 Blocks protein family: IPB000463 Cytosolic fatty-acid binding protein
UniProtKB/Swiss-Prot: FABP9_HUMAN, Q0Z7S8Similarity: Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family |
Function
for FABP9 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FABP9 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FABP9
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: FABP9 (NM_001080526) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FABP9 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FABP9 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005215 | transporter activity |
IEA | -- | | GO:0008289 | lipid binding |
IEA | -- |
FABP9 for ontologies About GeneDecksing
Animal Models:
Mouse knock-out Fabp9tm1Vise for FABP9
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Fabp9):
FABP9 for phenotypes About GeneDecksing
|
Pathways & Interactions
for FABP9 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for FABP9
STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)
1 Interacting protein for FABP9 (Q0Z7S83 ENSP000003683624) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001675 | acrosome assembly |
IEA | -- |
FABP9 for ontologies About GeneDecksing
|
Drugs & Compounds
for FABP9 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FABP9
Search CenterWatch for drugs/clinical trials and news about FABP9
|
Transcripts
for FABP9 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for FABP9 gene: NM_001080526.1 Unigene Cluster for FABP9: Fatty acid binding protein 9, testis Hs.653176 Unigene Representative Sequence: NM_0010805261 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000379071(uc011lfo.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FABP9 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FABP9
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: FABP9 (NM_001080526) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FABP9 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FABP9 |
GeneLoc Exon Structure
|
Expression
for FABP9 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| FABP9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCAGGGTTAG
About this image
See FABP9 Protein Expression from SPIRE MOPED and PaxDB
SOURCE GeneReport for Unigene cluster: Hs.653176
SABiosciences Custom PCR Arrays for FABP9
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FABP9
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat FABP9 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FABP9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FABP9 |
Orthologs
for FABP9 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for FABP9 gene from 5/15 species (see all 15) About this table
ENSEMBL Gene Tree for FABP9 (if available)
TreeFam Gene Tree for FABP9 (if available) |
Paralogs
for FABP9 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for FABP9 gene
- FABP52 RBP52 CRABP22 FABP122 FABP42 RBP12 FABP32 CRABP12
- RBP22 FABP22 PMP22 FABP72 RBP72
15 SIMAP similar genes for FABP9 using alignment to 1 protein entry: FABP9_HUMAN:FABP4 PMP2 DKFZp547J2313 FABP12 FABP3 FABP7
FABP5 FABP5P3 CRABP2 FABP2 RBP1 RBP2
CRABP1 RBP5 RBP7
FABP9 for paralogs About GeneDecksing
|
Genomic Variants
for FABP9 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 8 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for FABP9 (82370576 - 82373814 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for FABP9: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FABP9 |
|
Disorders
/ Diseases
for FABP9 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
FABP9 for disorders About GeneDecksing
4  diseases for FABP9: About MalaCardssickle cell anemia sporadic breast cancer breast cancer anemia
Export disorders for FABP9 gene to outside databases
|
Publications
for FABP9 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for FABP9 gene integrated from 9 sources:
(articles sorted by number of sources associating them with FABP9) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A novel testicular protein, with sequence similarities to a family of lipid binding proteins, is a major component of the rat sperm perinuclear theca. (PubMed id 7958448)1, 3 Oko R. and Morales C.R. (1994)
- Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. (PubMed id 18950845)1 Vega A....Carracedo A. (2009)
- Serum adipocyte-fatty acid binding protein discriminates patients with permanent and temporary body weight loss. (PubMed id 18803274)1 Stejskal D....Bronsky J. (2008)
- Interaction of rat hormone-sensitive lipase with adipocyte lipid-binding protein. (PubMed id 10318917)1 Shen W.J....Kraemer F.B. (1999)
|
External Searches for FABP9 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing FABP9 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing FABP9 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FABP9 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FABP9 | Pharmacogenomics, SNPs, Pathways |
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| | |
About This Section
| Patent Information for FABP9 gene:
Search GeneIP for patents involving FABP9
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FABP9 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for FABP9 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FABP9 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FABP9 | | | OriGene Protein Over-expression Lysate for FABP9 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for FABP9 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FABP9 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FABP9 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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