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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FABP9 Gene

protein-coding   GIFtS: 42
GCID: GC08M082370

Fatty Acid Binding Protein 9, Testis

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Fatty Acid Binding Protein 9, Testis1 2     PERF2
Testis Lipid-Binding Protein2 3     PERF152
Testis-Type Fatty Acid-Binding Protein2 3     Fatty Acid-Binding Protein 92
T-FABP2 3     Lipid-Binding Protein2
TLBP2 3     Testis Lipid Binding Protein2

External Ids:    HGNC: 35631   Entrez Gene: 6464802   Ensembl: ENSG000002051867   UniProtKB: Q0Z7S83   

Export aliases for FABP9 gene to outside databases

Previous GC identifers: GC00U990100 GC08U900525 GC08M082534 GC08M077860


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for FABP9 Gene: 
FABP9 (fatty acid binding protein 9, testis) is a protein-coding gene. Diseases associated with FABP9 include sporadic breast cancer, and sickle cell anemia. GO annotations related to this gene include lipid binding and transporter activity. An important paralog of this gene is FABP5.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.2  NT_008183.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the FABP9 gene promoter:
         C/EBPbeta   Sp1   AP-1   ATF-2   LUN-1   Gfi-1   POU2F1   POU2F1a   FOXO4   c-Jun   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for FABP9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FABP9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q21.13   Ensembl cytogenetic band:  8q21.13   HGNC cytogenetic band: 8q21.13

FABP9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FABP9 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M082370:  view genomic region     (about GC identifiers)

Start:
82,370,576 bp from pter      End:
82,373,814 bp from pter
Size:
3,239 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: FABP9_HUMAN, Q0Z7S8 (See protein sequence)
Recommended Name: Fatty acid-binding protein 9  
Size: 132 amino acids; 15093 Da
Subcellular location: Cytoplasm (Potential)
1 PDB 3D structure from and Proteopedia for FABP9:
4A60 (3D)    

Explore the universe of human proteins at neXtProt for FABP9: NX_Q0Z7S8

Explore proteomics data for FABP9 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q0Z7S8

  • FABP9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    FABP9 Protein Expression
    REFSEQ proteins: NP_001073995.1  
    ENSEMBL proteins: 
     ENSP00000368362  

    Human Recombinant Protein Products for FABP9: 
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    Browse Sino Biological Cell Lysates 
    ProSpec Recombinant Protein for FABP9
    Cloud-Clone Corp. Proteins for FABP9 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001669acrosomal vesicle IEA--

    FABP9 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    FABP: Fatty acid binding protein family

    4 InterPro protein domains:
     IPR012674 Calycin
     IPR011038 Calycin-like
     IPR000463 Fatty_acid-bd
     IPR000566 Lipocln_cytosolic_FA-bd_dom

    Graphical View of Domain Structure for InterPro Entry Q0Z7S8

    ProtoNet protein and cluster: Q0Z7S8

    1 Blocks protein domain: IPB000463 Cytosolic fatty-acid binding protein

    UniProtKB/Swiss-Prot: FABP9_HUMAN, Q0Z7S8
    Similarity: Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family


    FABP9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005215transporter activity IEA--
    GO:0008289lipid binding IEA--
         
    FABP9 for ontologies           About GeneDecksing


    Phenotypes:
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Fabp9):
     reproductive system 

    FABP9 for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out Fabp9tm1Vise for FABP9

       inGenious Targeting Laboratory - Custom generated mouse model solutions for FABP9 
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FABP9


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for FABP9

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for FABP9 (Q0Z7S83 ENSP000003683624) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    LIPEQ054693, ENSP000002442894I2D: score=1 STRING: ENSP00000244289
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001675acrosome assembly IEA--

    FABP9 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    EMD Millipore small molecules for FABP9:
    Small Molecule - inhibitor
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for FABP9

    Search CenterWatch for drugs/clinical trials and news about FABP9

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for FABP9 gene: 
    NM_001080526.1  

    Unigene Cluster for FABP9:

    Fatty acid binding protein 9, testis
    Hs.653176
    Unigene Representative Sequence: NM_001080526
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000379071(uc011lfo.2)
    miRNA
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    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
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    Clone
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                         Customized lentivirus expression plasmids for stable overexpression of FABP9 
    Primer
    Products:
        
    OriGene qSTAR qPCR primer pairs in human, mouse for FABP9
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FABP9
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FABP9

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    FABP9 expression in normal human tissues (normalized intensities)      FABP9 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAGGGTTAG
    FABP9 Expression
    About this image


    FABP9 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/2 selected tissues (see all 2) fully expand
     
     Testis (Reproductive System)
             XY Germ Cells Testis Cord
     
     Gonad
             XY Germ Cells Testis Cord

    See FABP9 Protein Expression from SPIRE MOPED and PaxDB
    SOURCE GeneReport for Unigene cluster: Hs.653176
        SABiosciences Custom PCR Arrays for FABP9
    Primer
    Products:
    OriGene qSTAR qPCR primer pairs in human, mouse for FABP9
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FABP9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for FABP9 gene from 4/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Fabp91 , 5 fatty acid binding protein 9, testis1, 5 79.8(n)1
    71.21(a)1
      3 (2.55 cM)5
    218841  NM_011598.21  NP_035728.21 
     101936285 
    chicken
    (Gallus gallus)
    Aves FABP46
    fatty acid-binding protein, adipocyte
    66(a)
    possible ortholog
    2(121225723-121228944)
    lizard
    (Anolis carolinensis)
    Reptilia FABP96
    Uncharacterized protein
    58(a)
    possible ortholog
    4(24482953-24493834)
    zebrafish
    (Danio rerio)
    Actinopterygii fabp11b6
    CABZ01088982.16
    (see all 4)
    Uncharacterized protein
    (see all 4)
    49(a)
    47(a)
    (see all 4)
    many ↔ many
    many ↔ many
    (see all 4)
    16(18199547-18202985)
    12(48259768-48260265)


    ENSEMBL Gene Tree for FABP9 (if available)
    TreeFam Gene Tree for FABP9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for FABP9 gene
    FABP52  RBP52  CRABP22  FABP122  FABP42  FABP32  RBP12  RBP22  
    CRABP12  FABP22  PMP22  FABP72  RBP72  
    15 SIMAP similar genes for FABP9 using alignment to 1 protein entry:     FABP9_HUMAN:
    FABP4    PMP2    DKFZp547J2313    FABP12    FABP3    FABP7
    FABP5    FABP5P3    CRABP2    FABP2    RBP1    RBP2
    CRABP1    RBP5    RBP7

    FABP9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/149 SNPs in FABP9 are shown (see all 149)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1919715691,2
    --82370118(+) ATAGCA/GACTTA 1 -- ds50010--------
    rs69837451,2
    C,F,H--82370129(+) TCCACA/GGTGTA 1 -- ds50017Minor allele frequency- G:0.07NS EA CSA WA 540
    rs20077421,2
    C,F,O,A,H--82370168(+) TATCTG/CTCTGT 1 -- ds500114Minor allele frequency- C:0.34NS EA NA WA 1102
    rs70043361,2
    C,F,H--82370252(+) TGGTTT/CTTAGA 1 -- ds500112Minor allele frequency- C:0.08NS EA NA CSA WA 1314
    rs1391592151,2
    --82370377(+) AGAGGA/CCAGAG 1 -- ds50010--------
    rs1438034491,2
    --82370506(+) TTTTAC/TTAAGC 1 -- ds50010--------
    rs794062541,2
    C,F--82370535(+) TTTTTA/TAAAAT 1 -- ds50012Minor allele frequency- T:0.04CSA WA 120
    rs1829852071,2
    --82370559(+) GCATAC/TCTTCT 1 -- ds50010--------
    rs774792251,2
    F--82370587(+) GTCAGT/CGAACA 1 -- ds50011Minor allele frequency- C:0.01NA 120
    rs1468625801,2
    C--82370630(+) TTTTCA/GTAGAT 2 Y syn10--------

    HapMap Linkage Disequilibrium report for FABP9 (82370576 - 82373814 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for FABP9:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv891065CNV Loss21882294
    nsv465721CNV Gain19166990

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    4 diseases for FABP9:    About MalaCards
    sporadic breast cancer    sickle cell anemia    anemia    breast cancer


    FABP9 for disorders           About GeneDecksing


    Export disorders for FABP9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for FABP9 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with FABP9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A novel testicular protein, with sequence similarities to a family of lipid binding proteins, is a major component of the rat sperm perinuclear theca. (PubMed id 7958448)1, 3 Oko R. and Morales C.R. (1994)
    2. Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. (PubMed id 18950845)1 Vega A....Carracedo A. (2009)
    3. Serum adipocyte-fatty acid binding protein discriminates patients with permanent and temporary body weight loss. (PubMed id 18803274)1 Stejskal D....Bronsky J. (2008)
    4. Interaction of rat hormone-sensitive lipase with adipocyte lipid-binding protein. (PubMed id 10318917)1 Shen W.J....Kraemer F.B. (1999)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 646480 HGNC: 3563 Ensembl:ENSG00000205186 euGenes: HUgn646480 ECgene: FABP9
    H-InvDB: FABP9

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for FABP9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for FABP9 gene:
    Search GeneIP for patents involving FABP9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     EMD Millipore small molecules (inhibitor) for FABP9
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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