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FABP9 Gene

protein-coding   GIFtS: 42
GCID: GC08M082370

Fatty Acid Binding Protein 9, Testis

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Fatty Acid Binding Protein 9, Testis1 2     PERF2
Testis Lipid-Binding Protein2 3     PERF152
Testis-Type Fatty Acid-Binding Protein2 3     Fatty Acid-Binding Protein 92
T-FABP2 3     Lipid-Binding Protein2
TLBP2 3     Testis Lipid Binding Protein2

External Ids:    HGNC: 35631   Entrez Gene: 6464802   Ensembl: ENSG000002051867   UniProtKB: Q0Z7S83   

Export aliases for FABP9 gene to outside databases

Previous GC identifers: GC00U990100 GC08U900525 GC08M082534 GC08M077860


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for FABP9 Gene:
FABP9 (fatty acid binding protein 9, testis) is a protein-coding gene. Diseases associated with FABP9 include sporadic breast cancer, and sickle cell anemia. GO annotations related to this gene include lipid binding and transporter activity. An important paralog of this gene is FABP5.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000008.11  NC_018919.2  NT_008183.20  
Regulatory elements:
   Regulatory transcription factor binding sites in the FABP9 gene promoter:
         C/EBPbeta   Sp1   AP-1   ATF-2   LUN-1   Gfi-1   POU2F1   POU2F1a   FOXO4   c-Jun   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for FABP9

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FABP9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q21.13   Ensembl cytogenetic band:  8q21.13   HGNC cytogenetic band: 8q21.13

FABP9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FABP9 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M082370:  view genomic region     (about GC identifiers)

Start:
82,370,576 bp from pter      End:
82,373,814 bp from pter
Size:
3,239 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: FABP9_HUMAN, Q0Z7S8 (See protein sequence)
Recommended Name: Fatty acid-binding protein 9  
Size: 132 amino acids; 15093 Da
1 PDB 3D structure from and Proteopedia for FABP9:
4A60 (3D)    

Explore the universe of human proteins at neXtProt for FABP9: NX_Q0Z7S8

Explore proteomics data for FABP9 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See FABP9 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001073995.1  
    ENSEMBL proteins: 
     ENSP00000368362  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    FABP: Fatty acid binding protein family

    4 InterPro protein domains:
     IPR012674 Calycin
     IPR011038 Calycin-like
     IPR000463 Fatty_acid-bd
     IPR000566 Lipocln_cytosolic_FA-bd_dom

    Graphical View of Domain Structure for InterPro Entry Q0Z7S8

    ProtoNet protein and cluster: Q0Z7S8

    1 Blocks protein domain: IPB000463 Cytosolic fatty-acid binding protein

    UniProtKB/Swiss-Prot: FABP9_HUMAN, Q0Z7S8
    Similarity: Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family


    FABP9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005215transporter activity IEA--
    GO:0008289lipid binding IEA--
         
    FABP9 for ontologies           About GeneDecksing


    Phenotypes:
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Fabp9):
     reproductive system 

    FABP9 for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out Fabp9tm1Vise for FABP9

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    FABP9_HUMAN, Q0Z7S8: Cytoplasm (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    nucleus2
    cytoskeleton1
    extracellular1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001669acrosomal vesicle IEA--

    FABP9 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FABP9
    Interactions:

        GeneGlobe Interaction Network for FABP9

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for FABP9 (Q0Z7S83 ENSP000003683624) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    LIPEQ054693, ENSP000002442894I2D: score=1 STRING: ENSP00000244289
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001675acrosome assembly IEA--

    FABP9 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for FABP9



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for FABP9 gene: 
    NM_001080526.1  

    Unigene Cluster for FABP9:

    Fatty acid binding protein 9, testis
    Hs.653176
    Unigene Representative Sequence: NM_001080526
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000379071(uc011lfo.2)
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      QuantiFast Probe-based Assays in human, mouse, rat FABP9

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    FABP9 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAGGGTTAG
    FABP9 Expression
    About this image


    FABP9 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 2) fully expand
     
     Testis (Reproductive System)
             XY Germ Cells Testis Cord
     
     Gonad
             XY Germ Cells Testis Cord
    FABP9 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    FABP9 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.653176
        Custom PCR Arrays for FABP9
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for FABP9 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Fabp91 , 5 fatty acid binding protein 9, testis1, 5 79.8(n)1
    71.21(a)1
      3 (2.55 cM)5
    218841  NM_011598.31  NP_035728.21 
     101936285 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    55(a)
    many ↔ many
    4(24461616-24465632)


    ENSEMBL Gene Tree for FABP9 (if available)
    TreeFam Gene Tree for FABP9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for FABP9 gene
    FABP52  RBP52  CRABP22  FABP122  FABP42  FABP32  RBP12  RBP22  
    CRABP12  FABP22  PMP22  FABP72  RBP72  
    15 SIMAP similar genes for FABP9 using alignment to 1 protein entry:     FABP9_HUMAN:
    FABP4    PMP2    DKFZp547J2313    FABP3    FABP12    FABP7
    FABP5    FABP5P3    CRABP2    FABP2    RBP1    RBP2
    CRABP1    RBP5    RBP7

    FABP9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for FABP9 (see all 149)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1919715691,2
    --82370118(+) ATAGCA/GACTTA 1 -- ds50010--------
    rs69837451,2
    C,F,H--82370129(+) TCCACA/GGTGTA 1 -- ds50017Minor allele frequency- G:0.07NS EA CSA WA 540
    rs20077421,2
    C,F,O,A,H--82370168(+) TATCTG/CTCTGT 1 -- ds500114Minor allele frequency- C:0.34NS EA NA WA 1102
    rs70043361,2
    C,F,H--82370252(+) TGGTTT/CTTAGA 1 -- ds500112Minor allele frequency- C:0.08NS EA NA CSA WA 1314
    rs1391592151,2
    --82370377(+) AGAGGA/CCAGAG 1 -- ds50010--------
    rs1438034491,2
    --82370506(+) TTTTAC/TTAAGC 1 -- ds50010--------
    rs794062541,2
    C,F--82370535(+) TTTTTA/TAAAAT 1 -- ds50012Minor allele frequency- T:0.04CSA WA 120
    rs1829852071,2
    --82370559(+) GCATAC/TCTTCT 1 -- ds50010--------
    rs774792251,2
    F--82370587(+) GTCAGT/CGAACA 1 -- ds50011Minor allele frequency- C:0.01NA 120
    rs1468625801,2
    C--82370630(+) TTTTCA/GTAGAT 2 Y syn10--------

    HapMap Linkage Disequilibrium report for FABP9 (82370576 - 82373814 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for FABP9:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv891065CNV Loss21882294
    nsv465721CNV Gain19166990

    Site Specific Mutation Identification with PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for FABP9

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    3 diseases for FABP9:    
    About MalaCards
    sporadic breast cancer    sickle cell anemia    breast cancer


    FABP9 for disorders           About GeneDecksing


    Export disorders for FABP9 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for FABP9 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with FABP9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A novel testicular protein, with sequence similarities to a family of lipid binding proteins, is a major component of the rat sperm perinuclear theca. (PubMed id 7958448)1, 3 Oko R. and Morales C.R. (Dev. Biol. 1994)
    2. Evaluating new candidate SNPs as low penetrance risk factors in sporadic breast cancer: a two-stage Spanish case-control study. (PubMed id 18950845)1 Vega A....Carracedo A. (Gynecol. Oncol. 2009)
    3. Serum adipocyte-fatty acid binding protein discriminates patients with permanent and temporary body weight loss. (PubMed id 18803274)1 Stejskal D....Bronsky J. (J. Clin. Lab. Anal. 2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 646480 HGNC: 3563 Ensembl:ENSG00000205186 euGenes: HUgn646480 ECgene: FABP9
    H-InvDB: FABP9

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for FABP9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for FABP9 gene:
    Search GeneIP for patents involving FABP9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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