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Aliases for FABP5P3 Gene

Aliases for FABP5P3 Gene

  • Fatty Acid Binding Protein 5 Pseudogene 3 2 3 5
  • Fatty Acid Binding Protein 5-Like 3 (Pseudogene) 2 3
  • FABP5L3 3 4
  • Putative Fatty Acid-Binding Protein 5-Like Protein 3 3
  • Fatty Acid-Binding Protein 5 Pseudogene 3 4
  • Fatty Acid Binding Protein 5-Like 3 2
  • TCAG_1781704 3

External Ids for FABP5P3 Gene

Previous HGNC Symbols for FABP5P3 Gene

  • FABP5L3

Previous GeneCards Identifiers for FABP5P3 Gene

  • GC07P152137

Summaries for FABP5P3 Gene

GeneCards Summary for FABP5P3 Gene

FABP5P3 (Fatty Acid Binding Protein 5 Pseudogene 3) is a Pseudogene. GO annotations related to this gene include transporter activity and lipid binding.

UniProtKB/Swiss-Prot for FABP5P3 Gene

  • High specificity for fatty acids.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FABP5P3 Gene

Genomics for FABP5P3 Gene

Regulatory Elements for FABP5P3 Gene

Enhancers for FABP5P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G151795 1.9 FANTOM5 Ensembl ENCODE dbSUPER 4.8 -639.5 -639468 3.3 PKNOX1 FOXA2 SIN3A KLF17 FEZF1 RAD21 YY1 ZSCAN5C SMARCC2 FOS PRKAG2 PRKAG2-AS1 LOC644090 FABP5P3 RHEB GC07M151742
GH07G152438 0.9 ENCODE dbSUPER 0.7 +1.2 1196 0.2 SMARCE1 PKNOX1 MAFG ARID1B NFIC ZNF316 SMARCA4 PBX2 NFE2L1 NFE2 ENSG00000212590 FABP5P3 CCT8L1P
GH07G152441 0.4 Ensembl 0.7 +4.5 4506 0.4 POLR2A RNA5SP250 RPL36AP28 CCT8L1P FABP5P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FABP5P3 on UCSC Golden Path with GeneCards custom track

Promoters for FABP5P3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000219965 -1495 4001 HDGF ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9

Genomic Location for FABP5P3 Gene

Chromosome:
7
Start:
152,436,895 bp from pter
End:
152,443,187 bp from pter
Size:
6,293 bases
Orientation:
Plus strand

Genomic View for FABP5P3 Gene

Genes around FABP5P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FABP5P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FABP5P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FABP5P3 Gene

Proteins for FABP5P3 Gene

  • Protein details for FABP5P3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MUU1-FB5L3_HUMAN
    Recommended name:
    Putative fatty acid-binding protein 5-like protein 3
    Protein Accession:
    A8MUU1

    Protein attributes for FABP5P3 Gene

    Size:
    101 amino acids
    Molecular mass:
    11299 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FABP5P3 Gene

Post-translational modifications for FABP5P3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FABP5P3 Gene

Domains & Families for FABP5P3 Gene

Protein Domains for FABP5P3 Gene

Suggested Antigen Peptide Sequences for FABP5P3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A8MUU1

UniProtKB/Swiss-Prot:

FB5L3_HUMAN :
  • Forms a beta-barrel structure that accommodates the hydrophobic ligand in its interior.
  • Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
Domain:
  • Forms a beta-barrel structure that accommodates the hydrophobic ligand in its interior.
Family:
  • Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
genes like me logo Genes that share domains with FABP5P3: view

No data available for Gene Families for FABP5P3 Gene

Function for FABP5P3 Gene

Molecular function for FABP5P3 Gene

UniProtKB/Swiss-Prot Function:
High specificity for fatty acids.

Gene Ontology (GO) - Molecular Function for FABP5P3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005215 transporter activity IEA --
GO:0008289 lipid binding IEA --
genes like me logo Genes that share ontologies with FABP5P3: view

Phenotypes for FABP5P3 Gene

GenomeRNAi human phenotypes for FABP5P3:
genes like me logo Genes that share phenotypes with FABP5P3: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FABP5P3 Gene

Localization for FABP5P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FABP5P3 Gene

Pathways & Interactions for FABP5P3 Gene

SuperPathways for FABP5P3 Gene

No Data Available

Interacting Proteins for FABP5P3 Gene

Selected Interacting proteins: A8MUU1-FB5L3_HUMAN for FABP5P3 Gene via IID

Symbol External ID(s) Details
FABP1
RBP2

Gene Ontology (GO) - Biological Process for FABP5P3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
genes like me logo Genes that share ontologies with FABP5P3: view

No data available for Pathways by source and SIGNOR curated interactions for FABP5P3 Gene

Transcripts for FABP5P3 Gene

mRNA/cDNA for FABP5P3 Gene

(1) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FABP5P3 Gene

Fatty acid binding protein 5 pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FABP5P3 Gene

No ASD Table

Relevant External Links for FABP5P3 Gene

GeneLoc Exon Structure for
FABP5P3
ECgene alternative splicing isoforms for
FABP5P3

Expression for FABP5P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FABP5P3 Gene

mRNA differential expression in normal tissues according to GTEx for FABP5P3 Gene

This gene is overexpressed in Testis (x21.1).

Protein differential expression in normal tissues from HIPED for FABP5P3 Gene

This gene is overexpressed in Neutrophil (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FABP5P3 Gene



Protein tissue co-expression partners for FABP5P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of FABP5P3 Gene:

FABP5P3

SOURCE GeneReport for Unigene cluster for FABP5P3 Gene:

Hs.647108
genes like me logo Genes that share expression patterns with FABP5P3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FABP5P3 Gene

Orthologs for FABP5P3 Gene

Evolution for FABP5P3 Gene

ENSEMBL:
Gene Tree for FABP5P3 (if available)
TreeFam:
Gene Tree for FABP5P3 (if available)

No data available for Orthologs for FABP5P3 Gene

Paralogs for FABP5P3 Gene

(9) SIMAP similar genes for FABP5P3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FABP5P3: view

No data available for Paralogs for FABP5P3 Gene

Variants for FABP5P3 Gene

Sequence variations from dbSNP and Humsavar for FABP5P3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000092407 -- 152,438,074(+) AGAAT(A/G)GGCAC intron-variant, upstream-variant-2KB
rs1000259654 -- 152,437,493(+) TCTAC(C/T)TTGGG intron-variant, upstream-variant-2KB
rs1000861767 -- 152,436,315(+) CAGCT(A/G)CTCCA intron-variant, upstream-variant-2KB
rs1000916908 -- 152,442,631(+) GGGAA(C/T)AGCTT nc-transcript-variant
rs1001134728 -- 152,436,707(+) CCCCG(C/G)GTTCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FABP5P3 Gene

Variant ID Type Subtype PubMed ID
dgv11730n54 CNV loss 21841781
dgv1339e214 CNV gain 21293372
dgv3695n106 OTHER inversion 24896259
esv3615506 CNV gain 21293372
nsv1017871 CNV gain 25217958
nsv1067934 OTHER inversion 25765185
nsv1151906 OTHER inversion 26484159
nsv609048 CNV gain 21841781
nsv970976 CNV duplication 23825009
nsv981613 CNV duplication 23825009

Relevant External Links for FABP5P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FABP5P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FABP5P3 Gene

Disorders for FABP5P3 Gene

Relevant External Links for FABP5P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FABP5P3

No disorders were found for FABP5P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FABP5P3 Gene

Publications for FABP5P3 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4 64

Products for FABP5P3 Gene

Sources for FABP5P3 Gene

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