 |
 | Services
| |
 |
Aliases & Descriptions for F3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CD142 1, 2 | | OTTHUMP00000012426 2 | | TF 2, 3 | | TFA 2, 5 | | Thromboplastin 3 |
| | | Descriptions |
|---|
| CD142 antigen 3 | | Coagulation factor III 2, 3 | | coagulation factor III (thromboplastin, tissue factor) 2 | | tissue factor 2 |
|
| | Search outside databases for aliases for F3 genePrevious GC identifers: GC01M095396 GC01M094200 GC01M094345 GC01M094466 |
Summaries for F3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for F3: This gene encodes coagulation factor III which is a cell surface glycoprotein. This factor enables cells to initiate the blood coagulation cascades, and it functions as the high-affinity receptor for the coagulation factor VII. The resulting complex provides a catalytic event that is responsible for initiation of the coagulation protease cascades by specific limited proteolysis. Unlike the other cofactors of these protease cascades, which circulate as nonfunctional precursors, this factor is a potent initiator that is fully functional when expressed on cell surfaces. There are 3 distinct domains of this factor: extracellular, transmembrane, and cytoplasmic. This protein is the only one in the coagulation pathway for which a congenital deficiency has not been described. [provided by RefSeq] UniProtKB/Swiss-Prot: TF_HUMAN, P13726Function: Initiates blood coagulation by forming a complex with circulating factor VII or VIIa. The [TF:VIIa] complex activates factors IX or X by specific limited protolysis. TF plays a role in normal hemostasis by initiating the cell-surface assembly and propagation of the coagulation protease cascadeGene Wiki entry for F3 (Tissue_factor) |
Genomic Location for F3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the F3 gene 
Entrez Gene cytogenetic band: 1p22-p21 Ensembl cytogenetic band: 1p21.3 HGNC cytogenetic band: 1p22-p21F3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M094706:
(about GC identifiers)
Start:
|
94,767,461 bp from pter |
End:
|
94,779,903 bp from pter |
Size:
|
12,443 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_032977.8
| Proteins for F3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TF_HUMAN, P13726 (See
protein sequence)Recommended Name: Tissue factor precursor Size: 295 amino acids; 33068 Da
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :1AHW (3D)
 1BOY (3D)
 1DAN (3D)
 1FAK (3D)
 1J9C (3D)
 1JPS (3D)
 1NL8 (3D)
 1O5D (3D)
 1TFH (3D)
 1UJ3 (3D)
 1W0Y (3D)
 1W2K (3D)
 1WQV (3D)
 1WSS (3D)
 1WTG (3D)
 1WUN (3D)
 1WV7 (3D)
 1Z6J (3D)
 2A2Q (3D)
 2AEI (3D)
 2AER (3D)
 2B7D (3D)
 2B8O (3D)
 2C4F (3D)
 2CEF (3D)
 2CEH (3D)
 2CEZ (3D)
 2CFJ (3D)
 2EC9 (3D)
 2F9B (3D)
 2FIR (3D)
 2FLB (3D)
 2FLR (3D)
 2HFT (3D)
 2PUQ (3D)
 2ZP0 (3D)
 2ZWL (3D)
 2ZZU (3D)
 3ELA (3D)
 
Secondary accessions: Q6FHG2Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001984.1
ENSEMBL proteins: ENSP00000334145 ENSP00000359226
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for F3: Assays for F3: | Protein
Domains/ Families for F3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P13726
ProtoNet protein and cluster: P13726 1 Blocks protein family: IPB001187 Tissue factor
UniProtKB/Swiss-Prot: TF_HUMAN, P13726Similarity: Belongs to the tissue factor family | Gene Function for F3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001993
Applied Biosystems Silencer® siRNAs for F3
Sigma-Aldrich siRNA and siRNA Panels for F3  Sigma-Aldrich shRNA Panels and shRNA for F3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001993                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001993                                  untagged cDNA clone in CMV expression vector: NM_001993 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001993
UniProtKB/Swiss-Prot: TF_HUMAN, P13726Function: Initiates blood coagulation by forming a complex with circulating factor VII or VIIa. The [TF:VIIa] complex activates factors IX or X by specific limited protolysis. TF plays a role in normal hemostasis by initiating the cell-surface assembly and propagation of the coagulation protease cascadeInduction: TF expression is highly dependent upon cell type. TF can also be induced by the inflammatory mediators interleukin 1 and TNF, as well as by endotoxin, to appear on monocytes and vascular endothelial cells as a component of cellular immune responseGenatlas biochemistry entry for F3:coagulation factor III,single chain glycoprotein,44kDa,initiating blood coagulation by complexing with F715/17 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for F3) (see all 17
):
| Pathways & Interactions for F3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for F3 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for F3 
5/98 Interacting proteins for F3 (ENSP000003341453) via UniProtKB, MINT, and/or STRING (see all 98
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007598 | blood coagulation, extrinsic pathway |
EXP | 7598447 | About this table
|
Drugs & Compounds for F3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for F3 10/32 Novoseek chemical compound relationships for F3 gene (see all 32
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| fibrinogen |
90.90 |
799 |
14987914 (4), 16454558 (4), 15795541 (3), 7923650 (3) (see all 99) |
| mnpt |
79.05 |
4 |
9459336 (2), 10926265 (1), 9059355 (1) |
| appt |
67.37 |
4 |
12627886 (1), 10414674 (1), 10329529 (1), 18639059 (1) |
| d-phe-phe-arg-chloromethyl ketone |
66.29 |
2 |
11258943 (1), 9819025 (1) |
| thrombofax |
65.60 |
2 |
9212356 (1), 2270531 (1) |
| gamma-carboxyglutamic acid |
63.84 |
22 |
1874730 (3), 8868516 (3), 9280313 (1), 8647260 (1) (see all 10) |
| dabigatran |
62.02 |
3 |
17598008 (1), 17061960 (1), 17950801 (1) |
| phospholipid |
59.32 |
129 |
10613654 (5), 1874730 (4), 16529959 (3), 15924438 (3) (see all 74) |
| napsagatran |
56.61 |
3 |
12871353 (2), 11372586 (1) |
| carbetimer |
54.12 |
1 |
2198795 (1) |
About this table
|
Transcripts for F3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001993
Sigma-Aldrich siRNA and siRNA Panels for F3  Sigma-Aldrich shRNA Panels and shRNA for F3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001993 REFSEQ mRNAs for F3 gene: NM_001993.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001993               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001993                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001993                                  untagged cDNA clone in CMV expression vector: NM_001993  Additional cDNA sequence: AF487337.1 AF497569.1 AF497570.1 AF497571.1 AK310918.1 AK312638.1 AY940729.1 AY940730.1 AY940731.1 BC011029.1 BT019808.1 CR541792.1 CR590388.1 J02931.1 M16553.1 M27436.1 X07680.1 11 DOTS entries: DT.413467 DT.91748572 DT.100833527 DT.95258172 DT.100787064 DT.100034264 DT.91657428 DT.91696356 DT.100045137 DT.91748574 DT.95250461 24/147 AceView cDNA sequences (see all 147
):R46493 BM763298 CR590388 BM981095 F02583 F06293 BI335812 BM988577 AA373308 CA307794 CA437990 X07680 CA438772 AI573071 AW338870 BM769013 CD677037 AI924814 BP363123 AI720113 BI913529 AF497571 BP356096 BG506479
highest scoring ESTs for F3:J02931 AF487337 AF497569 AF497570 AL133885 AU098605 AU280079 AW238813 BC011029 BE769960 Unigene Cluster for F3: Coagulation factor III (thromboplastin, tissue factor) Hs.62192 [show with all ESTs]Unigene Representative Sequence: NM_001993
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for F3 (see all 8
)
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | · | 2c | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7a | · | 7b | · | 7c | · | 7d | · | 7e | |
| SP1: | |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for F3
2 Ensembl transcripts including schematic representations: ENST00000334047
ENST00000370207
|
Expression for F3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| F3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for F3
1 / 2 / 3 5 probe-sets matching F3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TAGGAAAGTA
SOURCE GeneReport for Unigene cluster: Hs.62192
Expression variation in blood from EXPOLDB for F3 |
Orthologs for F3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for F3 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for F3
ENSEMBL Gene Tree for F3 | Paralogs for F3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for F3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for F3 (up to first 250kb)
|
Disorders & Mutations for F3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 134390
10/96 Novoseek disease relationships for F3 gene (see all 96
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| partial thromboplastin time prolonged |
91.39 |
79 |
9084708 (3), 12972821 (3), 2301750 (1), 2110553 (1) (see all 73) |
| coagulopathy |
88.80 |
115 |
8192064 (2), 8725725 (2), 14980916 (2), 19176989 (2) (see all 95) |
| thrombosis |
85.18 |
247 |
8911269 (4), 16466951 (4), 18610631 (3), 17694958 (3) (see all 99) |
| bleeding |
85.08 |
421 |
9031451 (4), 10934288 (4), 10389296 (3), 1625090 (3) (see all 99) |
| disseminated intravascular coagulation |
83.85 |
67 |
16828603 (2), 14758173 (2), 8180381 (1), 8037186 (1) (see all 60) |
| apc resistance |
81.43 |
48 |
11119756 (1), 11583314 (1), 11816542 (1), 15947551 (1) (see all 44) |
| thrombophilia |
80.37 |
47 |
12028043 (3), 16479463 (2), 15617024 (2), 7479207 (1) (see all 41) |
| prothrombin increased |
79.53 |
8 |
8826562 (1), 8503731 (1), 17393015 (1), 7841574 (1) (see all 8) |
| thrombocytopenia |
76.69 |
87 |
7914411 (1), 7634703 (1), 7489960 (1), 8826562 (1) (see all 86) |
| antiphospholipid syndrome |
76.01 |
34 |
8911269 (3), 7479207 (1), 9522600 (1), 12652293 (1) (see all 29) |
About this table
Human Gene Mutation Database: F3 Genetic Association Database: F3 Human Genome Epidemiology Navigator: F3 (22 documents)
|
Medical News for F3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for F3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/2228 PubMed articles for F3 gene (see all 2228
):- Genetic variations in the tissue factor gene are associated with clinical outcome in acute coronary syndrome and expression levels in human monocytes. (PubMed id 16239598)1, 3, 6 Malarstig A....Siegbahn A. (2005)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)3, 4 Gregory S.G.... Bentley D.R. (2006)
- Genetic factors contribute to bleeding after cardiac surgery. (PubMed id 15892865)3, 6 Welsby I.J....Stafford-Smith M. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Structure of extracellular tissue factor complexed with factor VIIa inhibited with a BPTI mutant. (PubMed id 9925787)3, 4 Zhang E.... Tulinsky A. (1999)
- The crystal structure of the extracellular domain of human tissue factor refined to 1.7-A resolution. (PubMed id 8609606)3, 4 Muller Y.A.... de Vos A.M. (1996)
- The crystal structure of the complex of blood coagulation factor VIIa with soluble tissue factor. (PubMed id 8598903)3, 4 Banner D.W.... Kirchhofer D. (1996)
- Structure of the extracellular domain of human tissue factor: location of the factor VIIa binding site. (PubMed id 8086403)3, 4 Muller Y.A.... de Vos A.M. (1994)
- Complete sequence of the human tissue factor gene, a highly regulated cellular receptor that initiates the coagulation protease cascade. (PubMed id 2719931)3, 4 Mackman N.... Edgington T.S. (1989)
- Human tissue factor contains thioester-linked palmitate and stearate on the cytoplasmic half-cystine. (PubMed id 3166978)3, 4 Bach R.... Nemerson Y. (1988)
|
Search for F3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing F3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing F3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing F3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| ATLAS Chromosomes in Cancer entry for F3 | Genetics and Cytogenetics in Oncology and Haematology | | SeattleSNPs | http://pga.gs.washington.edu/data/f3/ | | SHMPD | http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=TF | | Wikipedia | http://en.wikipedia.org/wiki/Tissue_factor |
|
| | | About This Section
| --
| Services for F3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for F3:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for F3 |
|
 |
 | | | Antibodies for F3 |
| |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|