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Aliases & Descriptions for F11R
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CD321 1 , 2 JAM 2 JAM-1 1 , 2 , 3 JAM-A 1 , 2 , 3 JAM1 2 , 3 , 5 JAMA 1 , 2 JCAM 1 , 2 , 3 KAT 2 OTTHUMP00000027880 2 OTTHUMP00000027881 2 PAM-1 1 , 2 , 3
Descriptions CD321 antigen 3 F11 receptor 2 Junctional adhesion molecule 1 1 , 2 , 3 Platelet F11 receptor 2 , 3 Platelet adhesion molecule 1 3 junctional adhesion molecule A 2 platelet adhesion molecule 2
Search outside databases for aliases for F11R genePrevious GC identifers: GC01M156698 GC01M157743 GC01M158182 GC01M157779
Summaries for F11R (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for F11R : Tight junctions represent one mode of cell-to-cell adhesion in epithelial or endothelial cellsheets, forming continuous seals around cells and serving as a physical barrier to prevent solutesand water from passing freely through the paracellular space. The protein encoded by thisimmunoglobulin superfamily gene member is an important regulator of tight junction assembly inepithelia. In addition, the encoded protein can act as (1) a receptor for reovirus, (2) a ligandfor the integrin LFA1, involved in leukocyte transmigration, and (3) a platelet receptor. Multiple5' alternatively spliced variants, encoding the same protein, have been identified but theirbiological validity has not been established. [provided by RefSeq] UniProtKB/Swiss-Prot: JAM1_HUMAN, Q9Y624 Function : Seems to plays a role in epithelial tight junction formation. Appears early in primordialforms of cell junctions and recruits PARD3. The association of the PARD6-PARD3 complex may preventthe interaction of PARD3 with JAM1, thereby preventing tight junction assembly (By similarity).Plays a role in regulating monocyte transmigration involved in integrity of epithelial barrier.Involved in platelet activation. In case of orthoreovirus infection, serves as receptor for thevirus
Gene Wiki entry for F11R (F11_receptor)
Genomic Location for F11R
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the F11R gene Entrez Gene cytogenetic band: 1q21.2-q21.3 Ensembl cytogenetic band: 1q23.3 HGNC cytogenetic band: 1q21.2-q21.3 F11R Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M159231:
(about GC identifiers )
Start:
159,232,608 bp from pter
End:
159,275,358 bp from pter
Size:
42,751 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for F11R
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: JAM1_HUMAN, Q9Y624 (See
protein sequence )Recommended Name: Junctional adhesion molecule A precursor Size : 299 amino acids; 32583 Da
Subunit : Interacts with the ninth PDZ domain of MPDZ. Interacts with the first PDZ domain of PARD3.The association between PARD3 and PARD6B probably disrupts this interaction. Interacts with theorthoreovirus sigma-1 capsid protein (By similarity)
Subcellular location : Cell junction, tight junction. Cell membrane; Single-pass type I membraneprotein. Note=Localized at tight junctions of both epithelial and endothelial cells
PDB structure from and Proteopedia : 1NBQ (3D)
 3EOY (3D)
 
Post-translational modifications:
N-glycosylated1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_058642.1 NP_653086.1 ENSEMBL proteins: ENSP00000357005 ENSP00000337141 ENSP00000289779 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for F11R: Assays for F11R:
Protein
Domains/ Families for F11R(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9Y624 ProtoNet protein and cluster: Q9Y624
2 Blocks protein families : IPB003596 Immunoglobulin V-type IPB003598 Immunoglobulin C-2 type UniProtKB/Swiss-Prot: JAM1_HUMAN, Q9Y624 Similarity : Belongs to the immunoglobulin superfamilySimilarity : Contains 2 Ig-like V-type (immunoglobulin-like) domains
Gene Function for F11R
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_016946 Applied Biosystems Silencer ® siRNAs for F11R Sigma-Aldrich siRNA and siRNA Panels for F11R Sigma-Aldrich shRNA Panels and shRNA for F11R Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_016946                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_016946                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_016946  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_016946 UniProtKB/Swiss-Prot: JAM1_HUMAN, Q9Y624 Function : Seems to plays a role in epithelial tight junction formation. Appears early in primordialforms of cell junctions and recruits PARD3. The association of the PARD6-PARD3 complex may preventthe interaction of PARD3 with JAM1, thereby preventing tight junction assembly (By similarity).Plays a role in regulating monocyte transmigration involved in integrity of epithelial barrier.Involved in platelet activation. In case of orthoreovirus infection, serves as receptor for thevirus
3 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for F11r) :1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005515 protein binding
IEA --
About this table
Pathways & Interactions for F11R
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for F11R (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for F11R 3 Interacting proteins for F11R (Q9Y624 2 ) via UniProtKB, MINT, and/or STRING About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for F11R (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for F11R 2 Novoseek chemical compound relationships for F11R gene
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Transcripts for F11R(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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siRNAs from Applied Biosystems ,
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shRNA from
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Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_016946 Sigma-Aldrich siRNA and siRNA Panels for F11R Sigma-Aldrich shRNA Panels and shRNA for F11R Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_016946
REFSEQ mRNAs for F11R gene (2 alternative transcripts): NM_016946.4 NM_144503.1 NM_016946
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_016946                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_016946                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_016946  
Additional cDNA sequence: AF154005.1 AF172398.2 AF207907.1 AK026665.1 AK075152.1 AK299487.1 AK304412.1 AL365518.1 AY358896.1 BC001533.2 BC001699.1 BC038219.1 BT020103.1 CR533512.1 CR608619.1 CR617107.1 CR617300.1
24/46 DOTS entries (see all 46
): DT.121464022 DT.101964034 DT.95172353 DT.91852005 DT.100821658 DT.100827531 DT.91967531 DT.317804 DT.121464000 DT.86847063 DT.121464074 DT.91770313 DT.99946969 DT.121463976 DT.91775010 DT.97768628 DT.121463952 DT.121464027 DT.121464007 DT.121464048 DT.91770316 DT.100821659 DT.121464025 DT.91775016
24/597 AceView cDNA sequences (see all 597
):BF726553 AA486100 AI739011 AW149882 AA404390 AI309112 BM541282 BF196344 AI282728 CR617107 AA359412 AI590808 AW510617 BG742621 AI620558 BU674758 BQ057979 BX116635 BC001699 BM786395 AI460272 BM982030 AA741250 AW071632
highest scoring ESTs for F11R :AA701033 AF111713 AI241578 BC001699 BC038219 BE267749 BE295468 BE513336 BE560144 BE561354
Unigene Cluster for F11R: F11 receptor Hs.517293 [show with all ESTs ] Unigene Representative Sequence: NM_016946 GeneLoc Exon Structure 5/18 Alternative Splicing Database (ASD) splice patterns (SP) for F11R (see all 18
) ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c · 10d ^ 11a · 11b · 11c · 11d ^ SP1 :                             -   -   -     -       -       -   -   SP2 :           -   -   -   -   -   -   -   -   -   -   -   -     -       -       -   -   SP3 :                             -   -   -     -       -   -   -   -   -   SP4 :                               -   -     -       -       -   -   SP5 :                                     -       -       -   -  
ExUns: 12a · 12b · 12c ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 SP1 :                 SP2 :                 SP3 :                 SP4 :                 SP5 :                
About this scheme ECgene alternative splicing isoforms for F11R 3 Ensembl transcripts including schematic representations : ENST00000368026
ENST00000335772
ENST00000289779
Expression for F11R
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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F11R expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for F11R 1 / 2 / 3
12 probe-sets matching F11R gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.517293
Orthologs for F11R
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for F11R gene from 5/7 species (see all 7
)
About this table Species with no ortholog for F11R ENSEMBL Gene Tree for F11R Paralogs for F11R (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for F11R gene JAM3 2 JAM2 2
SNPs/Variants for F11R (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for F11R (up to first 250kb)
Disorders & Mutations for F11R
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605721 5 Novoseek disease relationships for F11R gene
About this table Human Genome Epidemiology Navigator: F11R (4 documents)
Medical News for F11R (Possibly Related Articles in
Doctor's Guide )
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--
Publications for F11R (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/101 PubMed articles for F11R gene (see all 101
): Combined treatment of TNF-alpha and IFN-gamma causes redistribution of junctional adhesion molecule in human endothelial cells. (PubMed id 10395639) 2, 3, 4 Ozaki H.... Kita T. (1999) Mechanisms of platelet activation by a stimulatory antibody: cross-linking of a novel platelet receptor for monoclonal antibody F11 with the Fc gamma RII receptor. (PubMed id 7646439) 2, 3, 4 Naik U.P....Kornecki E. (1995) Characterization and chromosomal localization of JAM-1, a platelet receptor for a stimulatory monoclonal antibody. (PubMed id 11171323) 1, 3, 4 Naik U.P.... Spychala J. (2001) Cloning of the human platelet F11 receptor: a cell adhesion molecule member of the immunoglobulin superfamily involved in platelet aggregation. (PubMed id 10753840) 1, 3, 4 Sobocka M.B.... Kornecki E. (2000) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 3, 4 Zhang Z. and Henzel W.J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Crystal structure of human junctional adhesion molecule 1: implications for reovirus binding. (PubMed id 12697893) 3, 4 Prota A.E.... Stehle T. (2003) Leukocyte-endothelial-cell interactions in leukocyte transmigration and the inflammatory response. (PubMed id 12810109) 3, 4 Muller W.A. (2003) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801) 3, 4 Gevaert K.... Vandekerckhove J. (2003) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 3, 4 Clark H.F....Gray A. (2003)
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Genome Databases showing F11R
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing F11R
(According to HUGE )
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--
Specialized Databases showing F11R (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for F11R (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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