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Aliases for F11-AS1 Gene

Subcategory (RNA class) for F11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for F11-AS1 Gene

  • F11 Antisense RNA 1 2 3 5

External Ids for F11-AS1 Gene

Previous GeneCards Identifiers for F11-AS1 Gene

  • GC04M187209

Summaries for F11-AS1 Gene

GeneCards Summary for F11-AS1 Gene

F11-AS1 (F11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for F11-AS1 Gene

Genomics for F11-AS1 Gene

Regulatory Elements for F11-AS1 Gene

Enhancers for F11-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around F11-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for F11-AS1 Gene

Chromosome:
4
Start:
186,286,094 bp from pter
End:
186,501,058 bp from pter
Size:
214,965 bases
Orientation:
Minus strand

Genomic View for F11-AS1 Gene

Genes around F11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
F11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for F11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for F11-AS1 Gene

Proteins for F11-AS1 Gene

Post-translational modifications for F11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for F11-AS1 Gene

Domains & Families for F11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for F11-AS1 Gene

Function for F11-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for F11-AS1 Gene

Localization for F11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for F11-AS1 Gene

Pathways & Interactions for F11-AS1 Gene

SuperPathways for F11-AS1 Gene

No Data Available

Interacting Proteins for F11-AS1 Gene

Gene Ontology (GO) - Biological Process for F11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for F11-AS1 Gene

Drugs & Compounds for F11-AS1 Gene

No Compound Related Data Available

Transcripts for F11-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for F11-AS1 Gene

No ASD Table

Relevant External Links for F11-AS1 Gene

GeneLoc Exon Structure for
F11-AS1
ECgene alternative splicing isoforms for
F11-AS1

Expression for F11-AS1 Gene

mRNA expression in normal human tissues for F11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for F11-AS1 Gene

This gene is overexpressed in Liver (x37.0), Testis (x5.9), and Pancreas (x5.2).
genes like me logo Genes that share expression patterns with F11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for F11-AS1 Gene

Orthologs for F11-AS1 Gene

Evolution for F11-AS1 Gene

ENSEMBL:
Gene Tree for F11-AS1 (if available)
TreeFam:
Gene Tree for F11-AS1 (if available)

No data available for Orthologs for F11-AS1 Gene

Paralogs for F11-AS1 Gene

No data available for Paralogs for F11-AS1 Gene

Variants for F11-AS1 Gene

Sequence variations from dbSNP and Humsavar for F11-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs713223 -- 186,491,109(-) AGAAC(A/G)CAGGG intron-variant
rs713224 -- 186,491,213(+) CCCTC(C/G)TCTCT intron-variant
rs722128 -- 186,413,639(+) CTGGG(C/G)TCTAT intron-variant
rs737703 -- 186,365,596(-) AGAAA(C/T)TTGAT intron-variant
rs737704 -- 186,365,568(-) TCCTT(C/T)CTGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for F11-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1053e214 CNV loss 21293372
dgv1557e212 CNV loss 25503493
dgv2974n106 CNV tandem duplication 24896259
dgv2975n106 CNV deletion 24896259
dgv3156e59 CNV duplication 20981092
dgv3157e59 CNV duplication 20981092
dgv3158e59 CNV duplication 20981092
dgv331n21 CNV loss 19592680
dgv343e215 CNV deletion 23714750
dgv5494n100 CNV gain 25217958
dgv861e201 CNV deletion 23290073
dgv862e201 CNV deletion 23290073
dgv9434n54 CNV loss 21841781
dgv9435n54 CNV gain 21841781
dgv9436n54 CNV gain+loss 21841781
dgv9437n54 CNV loss 21841781
dgv9438n54 CNV loss 21841781
esv1001526 CNV loss 20482838
esv1010363 CNV insertion 20482838
esv1017217 CNV insertion 17803354
esv1323666 CNV deletion 17803354
esv1489691 CNV insertion 17803354
esv1497346 CNV deletion 17803354
esv1643447 CNV deletion 17803354
esv1681070 CNV deletion 17803354
esv1700178 CNV deletion 17803354
esv1738514 CNV insertion 17803354
esv2100481 CNV deletion 18987734
esv2229409 CNV deletion 18987734
esv23246 CNV loss 19812545
esv2456234 CNV deletion 19546169
esv2505993 CNV deletion 19546169
esv2628463 CNV deletion 19546169
esv2659612 CNV deletion 23128226
esv2667495 CNV deletion 23128226
esv26679 CNV gain 19812545
esv26701 CNV gain 19812545
esv2670453 CNV deletion 23128226
esv2670813 CNV deletion 23128226
esv2677779 CNV deletion 23128226
esv2728935 CNV deletion 23290073
esv2728936 CNV deletion 23290073
esv2728937 CNV deletion 23290073
esv2728944 CNV deletion 23290073
esv2728945 CNV deletion 23290073
esv2728946 CNV deletion 23290073
esv2728947 CNV deletion 23290073
esv2743258 CNV deletion 23290073
esv2759310 CNV gain 17122850
esv3296384 CNV deletion 24192839
esv3391563 CNV duplication 20981092
esv3393636 CNV insertion 20981092
esv3413877 CNV duplication 20981092
esv3430781 CNV duplication 20981092
esv3565196 CNV deletion 23714750
esv3565201 CNV deletion 23714750
esv3603526 CNV loss 21293372
esv3603527 CNV loss 21293372
esv3603529 CNV loss 21293372
esv3603532 CNV gain 21293372
esv3603533 CNV loss 21293372
esv989612 CNV deletion 20482838
esv996355 CNV deletion 20482838
esv998208 CNV deletion 20482838
nsv1015939 CNV gain 25217958
nsv1022361 CNV gain 25217958
nsv1024919 CNV gain 25217958
nsv1025244 CNV gain 25217958
nsv1028146 CNV gain 25217958
nsv1030319 CNV gain 25217958
nsv1034638 CNV loss 25217958
nsv10625 CNV gain 18304495
nsv10626 CNV loss 18304495
nsv1073825 CNV deletion 25765185
nsv1074253 CNV deletion 25765185
nsv1074782 CNV deletion 25765185
nsv1076865 CNV insertion 25765185
nsv1119018 CNV deletion 24896259
nsv1123880 CNV deletion 24896259
nsv1128119 CNV deletion 24896259
nsv1128120 CNV deletion 24896259
nsv1131852 CNV deletion 24896259
nsv1135946 CNV deletion 24896259
nsv1139343 CNV deletion 24896259
nsv1143113 CNV tandem duplication 24896259
nsv1150941 CNV deletion 26484159
nsv291244 CNV deletion 16902084
nsv291453 CNV insertion 16902084
nsv292413 CNV deletion 16902084
nsv435794 CNV deletion 17901297
nsv461864 CNV gain 19166990
nsv4645 CNV insertion 18451855
nsv474655 CNV novel sequence insertion 20440878
nsv476859 CNV novel sequence insertion 20440878
nsv478269 CNV novel sequence insertion 20440878
nsv509028 CNV insertion 20534489
nsv511242 CNV loss 21212237
nsv513190 CNV loss 21212237
nsv513191 CNV loss 21212237
nsv525719 CNV gain 19592680
nsv596392 CNV gain 21841781
nsv596401 CNV loss 21841781
nsv596417 CNV gain 21841781
nsv596418 CNV loss 21841781
nsv596420 CNV gain 21841781
nsv596437 CNV loss 21841781
nsv596438 CNV loss 21841781
nsv596439 CNV loss 21841781
nsv821190 CNV deletion 20802225
nsv822891 CNV loss 20364138
nsv980280 CNV duplication 23825009

Relevant External Links for F11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
F11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for F11-AS1 Gene

Disorders for F11-AS1 Gene

Relevant External Links for F11-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
F11-AS1

No disorders were found for F11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for F11-AS1 Gene

Publications for F11-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 65
  2. Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease. (PMID: 22703881) Tang W. … Folsom A.R. (Am. J. Hum. Genet. 2012) 3 65
  3. Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D. (PMID: 22760553) Adkins D.E. … van den Oord E.J. (Transl Psychiatry 2012) 3 65
  4. Genome-wide association of lipid-lowering response to statins in combined study populations. (PMID: 20339536) Barber M.J. … Krauss R.M. (PLoS ONE 2010) 3 65
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65

Products for F11-AS1 Gene

Sources for F11-AS1 Gene

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