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Aliases & Descriptions for F11
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 3.4.21.27 3 | | FXI 1, 2, 3 | | MGC141891 2 | | PTA 3 |
| | | Descriptions |
|---|
| Plasma thromboplastin antecedent 2, 3 | | coagulation factor XI 2 |
|
| | Search outside databases for aliases for F11 genePrevious GC identifers: GC04P188221 GC04P187867 GC04P187771 GC04P187883 GC04P187562 |
Summaries for F11(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for F11: This gene encodes coagulation factor XI of the blood coagulation cascade. This protein is present in plasma as a zymogen, which is a unique plasma coagulation enzyme because it exists as a homodimer consisting of two identical polypeptide chains linked by disulfide bonds. During activation of the plasma factor XI, an internal peptide bond is cleaved by factor XIIa (or XII) in each of the two chains, resulting in activated factor XIa, a serine protease composed of two heavy and two light chains held together by disulfide bonds. This activated plasma factor XI triggers the middle phase of the intrisic pathway of blood coagulation by activating factor IX. Defects in this factor lead to Rosenthal syndrome, a blood coagulation abnormality. [provided by RefSeq] UniProtKB/Swiss-Prot: FA11_HUMAN, P03951Function: Factor XI triggers the middle phase of the intrinsic pathway of blood coagulation by activating factor IXGene Wiki entry for F11 (Factor_XI) |
Genomic Location for F11
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the F11 gene 
Entrez Gene cytogenetic band: 4q35 Ensembl cytogenetic band: 4q35.2 HGNC cytogenetic band: 4q35F11 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04P187424:
(about GC identifiers)
Start:
|
187,424,112 bp from pter |
End:
|
187,447,829 bp from pter |
Size:
|
23,718 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000004.10 NT_022792.17
| Proteins for F11
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: FA11_HUMAN, P03951 (See
protein sequence)Recommended Name: Coagulation factor XI precursor Size: 625 amino acids; 70109 Da
Subunit: Homodimer; disulfide-linked. After activation the heavy and light chains are also linked by a disulfide bond
Subcellular location: Secreted
PDB structures from and Proteopedia :1XX9 (3D)
 1XXD (3D)
 1XXF (3D)
 1ZHM (3D)
 1ZHP (3D)
 1ZHR (3D)
 1ZJD (3D)
 1ZLR (3D)
 1ZMJ (3D)
 1ZML (3D)
 1ZMN (3D)
 1ZOM (3D)
 1ZPB (3D)
 1ZPC (3D)
 1ZPZ (3D)
 1ZRK (3D)
 1ZSJ (3D)
 1ZSK (3D)
 1ZSL (3D)
 1ZTJ (3D)
 1ZTK (3D)
 1ZTL (3D)
 2F83 (3D)
 2FDA (3D)
 2J8J (3D)
 2J8L (3D)
 3BG8 (3D)
 
Secondary accessions: Q4W5C2 Q9Y495Alternative splicing: 2 isoforms: P03951-1 P03951-2 Post-translational modifications:
Activated by factor XIIa (or XII), which cleaves each polypeptide after Arg-387 into the light chain, which contains the active site, and the heavy chain, which associates with high molecular weight (HMW) kininogen1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000119.1
ENSEMBL proteins: ENSP00000384957 ENSP00000264692 ENSP00000264691
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for F11: Assays for F11: | Protein
Domains/ Families for F11(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P03951
ProtoNet protein and cluster: P03951 4 Blocks protein families: IPB000177 Apple domain IPB001254 Serine protease IPB001314 Chymotrypsin serine protease family (S1) signature IPB003014 N/apple PAN
UniProtKB/Swiss-Prot: FA11_HUMAN, P03951Similarity: Belongs to the peptidase S1 family. Plasma kallikrein subfamilySimilarity: Contains 4 apple domainsSimilarity: Contains 1 peptidase S1 domain | Gene Function for F11
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_000128
Applied Biosystems Silencer® siRNAs for F11
Sigma-Aldrich siRNA and siRNA Panels for F11  Sigma-Aldrich shRNA for F11  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000128                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000128                                  untagged cDNA clones in CMV expression vector (see all 2): NM_000128 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000128
UniProtKB/Swiss-Prot: FA11_HUMAN, P03951Function: Factor XI triggers the middle phase of the intrinsic pathway of blood coagulation by activating factor IXCatalytic activity: Selective cleavage of Arg- -Ala and Arg- -Val bonds in factor IX to form factor IXaEnzyme Number (IUBMB): EC 3.4.21.27 Genatlas biochemistry entry for F11:coagulation factor XI,80kDa,homodimer of two monomers (plasma thromboplastin antecedent),contact activation pathway12 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for F11):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for F11
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for F11 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for F11 
5/28 Interacting proteins for F11 (ENSP000002646913) via UniProtKB, MINT, and/or STRING (see all 28
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for F11(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for F11 6 Novoseek chemical compound relationships for F11 gene
About this table
|
Transcripts for F11(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_000128
Sigma-Aldrich siRNA and siRNA Panels for F11  Sigma-Aldrich shRNA for F11  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000128 REFSEQ mRNAs for F11 gene: NM_000128.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000128               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000128                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000128                                  untagged cDNA clones in CMV expression vector (see all 2): NM_000128  Additional cDNA sequence: BC034307.1 7 DOTS entries: DT.109659 DT.92420277 DT.95148689 DT.92420278 DT.92420280 DT.91789182 DT.91820500 23 AceView cDNA sequences:AL703888 BC074947 BC074946 NM_005958 BI520221 U14108 CB155561 AI138290 BX112166 CB122088 AF435588 AI204202 AI126472 BC038717 BC034307 AI001834 BU567547 AI221202 BI520849 BI459826 AI208101 BU194998 BG719069
highest scoring ESTs for F11:M13142 AF045649 AI675074 AW242380 BE326842 BF511049 BQ271011 CA774579 CA848332 H69115 Unigene Clusters for F11: Coagulation factor XI Hs.1430 [show with all ESTs], Hs.714107 [show with all ESTs]Unigene Representative Sequences: NM_000128, BC034307
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for F11 (see all 6
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | ^ | 10a | · | 10b | ^ | 11a | · | 11b | ^ | 12 | ^ | 13a | · | 13b | ^ | 14 | ^ | 15a | · | 15b | ^ | 16a | · | 16b | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for F11
3 Ensembl transcripts including schematic representations: ENST00000403665
ENST00000264692
ENST00000264691
|
Expression for F11
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| F11 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for F11
1 / 2 / 3 6 probe-sets matching F11 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGCCAGGATG
SOURCE GeneReport for Unigene clusters: Hs.1430 Hs.714107
Expression variation in blood from EXPOLDB for F11 UniProtKB/Swiss-Prot: FA11_HUMAN, P03951Tissue specificity: Isoform 2 is produced by platelets and megakaryocytes but absent from other blood cells |
Orthologs for F11
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for F11 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for F11
ENSEMBL Gene Tree for F11 | Paralogs for F11(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for F11 gene
- ENSG000001755092 KLKB12 ACR2 TMPRSS52 HPN2
|
SNPs/Variants for F11(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for F11 (up to first 250kb)
|
Disorders & Mutations for F11
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 264900 disorders: 612416 612416 UniProtKB/Swiss-Prot: FA11_HUMAN, P03951
Defects in F11 are the cause of F11 deficiency [MIM:612416]; also called plasma thromboplastin antecedent deficiency or Rosenthal syndrome. It is a blood coagulation abnormality occurring in high frequency in Ashkenazi jews. F11-deficient patients are prone to excessive bleeding after haemostatic challenge10/21 Novoseek disease relationships for F11 gene (see all 21
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| factor xi deficiency |
97.57 |
23 |
15182578 (3), 8445157 (2), 17607578 (1), 18832909 (1) (see all 18) |
| bleeding tendency |
82.08 |
17 |
14872426 (2), 7631304 (2), 14717969 (1), 17607578 (1) (see all 11) |
| inherited coagulation disorders |
81.50 |
3 |
19448217 (1), 16670069 (1), 18839438 (1) |
| coagulopathy |
78.07 |
30 |
9482440 (2), 11127865 (1), 16086308 (1), 17581330 (1) (see all 20) |
| afibrinogenemia |
70.19 |
3 |
19174980 (1), 16670069 (1), 16684009 (1) |
| hemophilia a |
67.87 |
7 |
16424651 (1), 19236780 (1), 10513769 (1), 14717973 (1) |
| coagulation factor deficiency |
67.76 |
1 |
16078927 (1) |
| von willebrand disease |
65.06 |
17 |
9482440 (3), 10215946 (1), 15357775 (1), 8266918 (1) (see all 7) |
| thrombophilia |
61.36 |
2 |
15692250 (1), 14521595 (1) |
| bleeding |
61.27 |
70 |
18384352 (3), 14872426 (2), 8757530 (2), 10027710 (2) (see all 37) |
About this table
Genatlas disease: F11 bleeding diathesis,mild,inconstant Human Gene Mutation Database: F11 Genetic Association Database: F11 Human Genome Epidemiology Navigator: F11 (7 documents)
|
Medical News for F11(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for F11 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/258 PubMed articles for F11 gene (see all 258
):- Factor XI deficiency in French Basques is caused predominantly by an ancestral Cys38Arg mutation in the factor XI gene. (PubMed id 11895778)3, 4, 6 Zivelin A....Seligsohn U. (2002)
- Heterozygous factor XI deficiency associated with three novel mutations. (PubMed id 10606881)3, 4, 6 Mitchell M.... Alhaq A. (1999)
- Expression of human blood coagulation factor XI: characterization of the defect in factor XI type III deficiency. (PubMed id 1547342)1, 3, 4 Meijers J.C.... Chung D.W. (1992)
- Identification of a novel mutation in a non-Jewish factor XI deficient kindred. (PubMed id 10027710)1, 3, 4 Alhaq A.... Savidge G. (1999)
- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)3, 4 Liu T.... Smith R.D. (2005)
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)3, 4 Hillier L.W....Wilson R.K. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Localization of a heparin binding site in the catalytic domain of factor XIa. (PubMed id 11412111)3, 4 Badellino K.O. and Walsh P.N. (2001)
- Characterization of single-nucleotide polymorphisms in coding regions of human genes. (PubMed id 10391209)3, 4 Cargill M....Lander E.S. (1999)
- Molecular cloning of platelet factor XI, an alternative splicing product of the plasma factor XI gene. (PubMed id 9593722)3, 4 Hsu T.-C.... Walsh P.N. (1998)
|
Search for F11
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing F11
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing F11
(According to HUGE)
About This Section
| -- |
Specialized Databases showing F11(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| ATLAS Chromosomes in Cancer entry for F11 | Genetics and Cytogenetics in Oncology and Haematology | | Wikipedia | http://en.wikipedia.org/wiki/Factor_XI | | GeneReviews | http://www.genetests.org/query?gene=F11 | | SeattleSNPs | http://pga.gs.washington.edu/data/f11/ |
|
| | | About This Section
| --
| Services for F11(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
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