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Aliases for EXTL3-AS1 Gene

Subcategory (RNA class) for EXTL3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EXTL3-AS1 Gene

  • EXTL3 Antisense RNA 1 2 3 5
  • EXTL3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 8 Open Reading Frame 50 2
  • C8orf50 3

External Ids for EXTL3-AS1 Gene

Previous HGNC Symbols for EXTL3-AS1 Gene

  • C8orf50

Previous GeneCards Identifiers for EXTL3-AS1 Gene

  • GC08M028554

Summaries for EXTL3-AS1 Gene

GeneCards Summary for EXTL3-AS1 Gene

EXTL3-AS1 (EXTL3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for EXTL3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EXTL3-AS1 Gene

Genomics for EXTL3-AS1 Gene

GeneHancer (GH) Regulatory Elements for EXTL3-AS1 Gene

Promoters and enhancers for EXTL3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I028699 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 575 -0.6 -601 4.6 PKNOX1 SIN3A ZNF2 ZNF48 YY1 SLC30A9 ZNF766 ELK1 ZNF143 ATF7 EXTL3-AS1 EXTL3 INTS9 INTS9-AS1 KIF13B ENSG00000254129 PIR55838
GH08I028621 Promoter/Enhancer 1.8 Ensembl ENCODE 10.4 +77.7 77671 4.4 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF766 CBX5 ZNF213 ZNF207 ZNF143 LOC105379345 EXTL3 EXTL3-AS1 ELP3 ENSG00000259366 LOC105379344 GC08P028669
GH08I028711 Enhancer 1.3 FANTOM5 Ensembl ENCODE 11.5 -11.7 -11650 3.7 HDAC1 FOXA2 BATF ZNF335 ATF7 CEBPB JUNB MEF2D NFIC SMARCA4 EXTL3 EXTL3-AS1 INTS9-AS1 INTS9 FZD3 ZNF395 PIR55838
GH08I029124 Enhancer 1.2 Ensembl ENCODE 10.3 -424.6 -424586 2.5 PKNOX1 FEZF1 ZNF2 YY1 ZNF213 FOS SP3 ZNF592 MEF2D ZNF610 ENSG00000259366 ZNF395 EXTL3-AS1 INTS9 FZD3 GC08P029142 ENSG00000254129 KIF13B
GH08I029339 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 5 -639.6 -639611 3.6 HDGF SIN3A ZNF2 ZNF48 RAD21 ZNF121 ARID2 ZNF207 ZNF143 RCOR1 RNU6-1218P EXTL3-AS1 KIF13B DUSP4 GC08M029333
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around EXTL3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for EXTL3-AS1 Gene

Genomic Locations for EXTL3-AS1 Gene
chr8:28,696,198-28,701,464
(GRCh38/hg38)
Size:
5,267 bases
Orientation:
Minus strand
chr8:28,553,718-28,558,981
(GRCh37/hg19)

Genomic View for EXTL3-AS1 Gene

Genes around EXTL3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EXTL3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EXTL3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EXTL3-AS1 Gene

Proteins for EXTL3-AS1 Gene

Post-translational modifications for EXTL3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EXTL3-AS1 Gene

Domains & Families for EXTL3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EXTL3-AS1 Gene

Function for EXTL3-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EXTL3-AS1 Gene

Localization for EXTL3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for EXTL3-AS1 Gene

Pathways & Interactions for EXTL3-AS1 Gene

SuperPathways for EXTL3-AS1 Gene

No Data Available

Interacting Proteins for EXTL3-AS1 Gene

Gene Ontology (GO) - Biological Process for EXTL3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EXTL3-AS1 Gene

Drugs & Compounds for EXTL3-AS1 Gene

No Compound Related Data Available

Transcripts for EXTL3-AS1 Gene

mRNA/cDNA for EXTL3-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EXTL3-AS1 Gene

No ASD Table

Relevant External Links for EXTL3-AS1 Gene

GeneLoc Exon Structure for
EXTL3-AS1
ECgene alternative splicing isoforms for
EXTL3-AS1

Expression for EXTL3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EXTL3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EXTL3-AS1 Gene

This gene is overexpressed in Testis (x5.0).
genes like me logo Genes that share expression patterns with EXTL3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EXTL3-AS1 Gene

Orthologs for EXTL3-AS1 Gene

Evolution for EXTL3-AS1 Gene

ENSEMBL:
Gene Tree for EXTL3-AS1 (if available)
TreeFam:
Gene Tree for EXTL3-AS1 (if available)

No data available for Orthologs for EXTL3-AS1 Gene

Paralogs for EXTL3-AS1 Gene

No data available for Paralogs for EXTL3-AS1 Gene

Variants for EXTL3-AS1 Gene

Sequence variations from dbSNP and Humsavar for EXTL3-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000023436 -- 28,698,166(-) A/G downstream_transcript_variant
rs1000195606 -- 28,701,765(-) G/A upstream_transcript_variant
rs1000631054 -- 28,701,967(-) T/G upstream_transcript_variant
rs1001467111 -- 28,699,451(-) C/A/T non_coding_transcript_variant
rs1001902194 -- 28,701,024(-) G/A intron_variant

Additional Variant Information for EXTL3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EXTL3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EXTL3-AS1 Gene

Disorders for EXTL3-AS1 Gene

Additional Disease Information for EXTL3-AS1

No disorders were found for EXTL3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EXTL3-AS1 Gene

Publications for EXTL3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58

Products for EXTL3-AS1 Gene

Sources for EXTL3-AS1 Gene

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