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Aliases for EXTL3-AS1 Gene

Subcategory (RNA class) for EXTL3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EXTL3-AS1 Gene

  • EXTL3 Antisense RNA 1 2 3 5
  • EXTL3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 8 Open Reading Frame 50 2
  • C8orf50 3

External Ids for EXTL3-AS1 Gene

Previous HGNC Symbols for EXTL3-AS1 Gene

  • C8orf50

Previous GeneCards Identifiers for EXTL3-AS1 Gene

  • GC08M028554

Summaries for EXTL3-AS1 Gene

GeneCards Summary for EXTL3-AS1 Gene

EXTL3-AS1 (EXTL3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EXTL3-AS1 Gene

Genomics for EXTL3-AS1 Gene

Regulatory Elements for EXTL3-AS1 Gene

Enhancers for EXTL3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G028699 1.1 ENCODE 25 -0.6 -601 4.6 PKNOX1 SIN3A FEZF1 ZNF2 YY1 SLC30A9 ZNF766 ZNF143 SP3 REST EXTL3-AS1 EXTL3 INTS9-AS1 INTS9 KIF13B ENSG00000254129 PIR55838
GH08G028711 1.4 FANTOM5 Ensembl ENCODE 11.5 -11.7 -11650 3.7 HDAC1 FOXA2 FOS MIER1 CEBPB JUNB MEF2D NFIC SMARCA4 PBX2 EXTL3 EXTL3-AS1 INTS9-AS1 INTS9 FZD3 ZNF395 PIR55838
GH08G029339 1.8 FANTOM5 Ensembl ENCODE dbSUPER 5 -639.6 -639612 3.6 HDGF CBX3 WRNIP1 ZNF2 ZNF48 RAD21 ZNF121 ZNF143 ZNF207 FOS RNU6-1218P EXTL3-AS1 KIF13B DUSP4 GC08M029333
GH08G029497 1.4 FANTOM5 Ensembl ENCODE 5.4 -797.3 -797318 3.4 TBP PKNOX1 FOXA2 TBL1XR1 SIN3A ZBTB40 YY1 ZNF207 IKZF2 CREM DUSP4 KIF13B EXTL3-AS1 GC08M029522 LOC105379349
GH08G028774 1.4 FANTOM5 Ensembl ENCODE 4.8 -75.9 -75931 5.6 HDAC1 CTCF ESRRA FOXA2 PYGO2 ZNF644 RAD21 ZNF7 FOSL1 ZNF766 EXTL3 INTS9-AS1 INTS9 EXTL3-AS1 KIF13B PIR53077
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EXTL3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for EXTL3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000222795 -636 2201 PKNOX1 SIN3A ZNF2 ZNF48 YY1 SLC30A9 ELK1 ZNF143 SP3 REST

Genomic Location for EXTL3-AS1 Gene

Chromosome:
8
Start:
28,696,198 bp from pter
End:
28,701,464 bp from pter
Size:
5,267 bases
Orientation:
Minus strand

Genomic View for EXTL3-AS1 Gene

Genes around EXTL3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EXTL3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EXTL3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EXTL3-AS1 Gene

Proteins for EXTL3-AS1 Gene

Post-translational modifications for EXTL3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EXTL3-AS1 Gene

Domains & Families for EXTL3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EXTL3-AS1 Gene

Function for EXTL3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EXTL3-AS1 Gene

Localization for EXTL3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EXTL3-AS1 Gene

Pathways & Interactions for EXTL3-AS1 Gene

SuperPathways for EXTL3-AS1 Gene

No Data Available

Interacting Proteins for EXTL3-AS1 Gene

Gene Ontology (GO) - Biological Process for EXTL3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EXTL3-AS1 Gene

Drugs & Compounds for EXTL3-AS1 Gene

No Compound Related Data Available

Transcripts for EXTL3-AS1 Gene

mRNA/cDNA for EXTL3-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EXTL3-AS1 Gene

No ASD Table

Relevant External Links for EXTL3-AS1 Gene

GeneLoc Exon Structure for
EXTL3-AS1
ECgene alternative splicing isoforms for
EXTL3-AS1

Expression for EXTL3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EXTL3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EXTL3-AS1 Gene

This gene is overexpressed in Testis (x5.0).
genes like me logo Genes that share expression patterns with EXTL3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EXTL3-AS1 Gene

Orthologs for EXTL3-AS1 Gene

Evolution for EXTL3-AS1 Gene

ENSEMBL:
Gene Tree for EXTL3-AS1 (if available)
TreeFam:
Gene Tree for EXTL3-AS1 (if available)

No data available for Orthologs for EXTL3-AS1 Gene

Paralogs for EXTL3-AS1 Gene

No data available for Paralogs for EXTL3-AS1 Gene

Variants for EXTL3-AS1 Gene

Sequence variations from dbSNP and Humsavar for EXTL3-AS1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000023436 -- 28,698,166(+) CTTTA(A/G)GTCTT downstream-variant-500B
rs1000195606 -- 28,701,765(+) GGGAG(A/G)GACCG intron-variant, upstream-variant-2KB
rs1000631054 -- 28,701,967(+) CAGTT(G/T)GGGCT intron-variant, upstream-variant-2KB
rs1001467111 -- 28,699,451(+) CAAAG(C/T)GGAGG nc-transcript-variant
rs1001902194 -- 28,701,024(+) GCCTT(A/G)TCTTT intron-variant, upstream-variant-2KB

Relevant External Links for EXTL3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EXTL3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for EXTL3-AS1 Gene

Disorders for EXTL3-AS1 Gene

Relevant External Links for EXTL3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EXTL3-AS1

No disorders were found for EXTL3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EXTL3-AS1 Gene

Publications for EXTL3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for EXTL3-AS1 Gene

Sources for EXTL3-AS1 Gene

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