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Aliases & Descriptions for EXOSC5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CML28 3 | | EC 3.1.13.- 3 | | MGC111224 2 | | MGC12901 1, 2 | | RRP41B 1, 2 | | RRP46 1, 2, 3 | | Rrp46p 1, 2 | | hRrp46p 1, 2 | | p12B 1, 2, 3 |
| | | Descriptions |
|---|
| Chronic myelogenous leukemia tumor antigen 28 3 | | Ribosomal RNA-processing protein 46 3 | | exosome component 5 2, 3 | | exosome component Rrp46 2 |
|
| | Search outside databases for aliases for EXOSC5 genePrevious GC identifer: GC19M046585 |
Summaries for EXOSC5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: EXOS5_HUMAN, Q9NQT4Function: Component of the exosome 3'->5' exoribonuclease complex, a complex that degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3'-untranslated regions. Required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA. Has a 3'-5' exonuclease activityGene Wiki entry for EXOSC5 (Exosome_component_5) |
Genomic Location for EXOSC5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EXOSC5 gene 
Entrez Gene cytogenetic band: 19q13.1 Ensembl cytogenetic band: 19q13.2 HGNC cytogenetic band: 19q13.1EXOSC5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M046586:
(about GC identifiers)
Start:
|
46,584,115 bp from pter |
End:
|
46,595,096 bp from pter |
Size:
|
10,982 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011109.15
| Proteins for EXOSC5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: EXOS5_HUMAN, Q9NQT4 (See
protein sequence)Recommended Name: Exosome complex exonuclease RRP46 Size: 235 amino acids; 25249 Da
Subunit: Component of the exosome multienzyme ribonuclease complex composed of at least 11 proteins: EXOSC1/CSL4, EXOSC2/RRP4, EXOSC3/RRP40, EXOSC4/RRP41, EXOSC5/RRP46, EXOSC6/MTR3, EXOSC7/RRP42, EXOSC8/RRP43, EXOSC9/Scl-75, DIS3/RRP44, and EXOSC10/Scl-100 (only in the nuclear complex). Also associated with the GTPase Ran. Interacts directly with EXOSC1
Subcellular location: Nucleus, nucleolus
PDB structures from and Proteopedia :2NN6 (3D)
 
Secondary accessions: Q32Q81 Q8NG16 Q96I89Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_064543.3
ENSEMBL proteins: ENSP00000221233
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for EXOSC5: Assays for EXOSC5: | Protein
Domains/ Families for EXOSC5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9NQT4
ProtoNet protein and cluster: Q9NQT4 UniProtKB/Swiss-Prot: EXOS5_HUMAN, Q9NQT4Similarity: Belongs to the RNase PH family | Gene Function for EXOSC5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020158
Applied Biosystems Silencer® siRNAs for EXOSC5
Sigma-Aldrich siRNA for EXOSC5  Sigma-Aldrich shRNA for EXOSC5  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_020158                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020158                                  untagged cDNA clone in CMV expression vector: NM_020158 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_020158
UniProtKB/Swiss-Prot: EXOS5_HUMAN, Q9NQT4Function: Component of the exosome 3'->5' exoribonuclease complex, a complex that degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3'-untranslated regions. Required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA. Has a 3'-5' exonuclease activityEnzyme Number (IUBMB): EC 3.1.13.- 5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for EXOSC5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/20 Interacting proteins for EXOSC5 (ENSP000002212333 Q9NQT41, 2) via UniProtKB, MINT, and/or STRING (see all 20
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for EXOSC5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for EXOSC5
|
Transcripts for EXOSC5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_020158
Sigma-Aldrich siRNA for EXOSC5  Sigma-Aldrich shRNA for EXOSC5  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_020158 REFSEQ mRNAs for EXOSC5 gene: NM_020158.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_020158               OriGene GFP tagged cDNA clone in CMV expression vector: NM_020158                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_020158                                  untagged cDNA clone in CMV expression vector: NM_020158  Additional cDNA sequence: AF281134.1 AF285785.1 AK314941.1 BC007742.2 BC107696.1 CR592651.1 CR600780.1 CR620099.1 CR621752.1 17 DOTS entries: DT.446730 DT.100697122 DT.100787480 DT.100787486 DT.121460932 DT.100787485 DT.100787479 DT.121461048 DT.121460787 DT.100711453 DT.100787483 DT.121460801 DT.121460897 DT.121461144 DT.40113849 DT.95237655 DT.99997857 24/223 AceView cDNA sequences (see all 223
):BE208616 CA945111 CR600780 BX333742 CA444881 AI359994 BM704499 AI264531 AI214223 BG826804 BU557371 BQ101103 CF126342 BU956438 AF281134 CR620099 CR621752 AI700402 BG396350 AI078748 BE619128 BM671643 AA448983 BX462406
highest scoring ESTs for EXOSC5:AF281134 AF285785 AI971527 AW249169 AW674475 BC007742 BE253841 BE275615 BE388544 BE619645 Unigene Cluster for EXOSC5: Exosome component 5 Hs.283741 [show with all ESTs]Unigene Representative Sequence: BM450105
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for EXOSC5
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6a | · | 6b | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for EXOSC5
1 Ensembl transcript including schematic representation: ENST00000221233
|
Expression for EXOSC5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EXOSC5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EXOSC5
1 / 2 / 3 3 probe-sets matching EXOSC5 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGCTCCTTGA
SOURCE GeneReport for Unigene cluster: Hs.283741 UniProtKB/Swiss-Prot: EXOS5_HUMAN, Q9NQT4Tissue specificity: Highly expressed in a variety of hematopoietic and epithelial tumor cell lines, but not in normal hematopoietic tissues or other normal tissue, with the exception of testis |
Orthologs for EXOSC5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for EXOSC5 gene from 5/17 species (see all 17
)
About this table Species with no ortholog for EXOSC5
ENSEMBL Gene Tree for EXOSC5 | Paralogs for EXOSC5(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EXOSC5 gene
- EXOSC42 EXOSC62
|
SNPs/Variants for EXOSC5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for EXOSC5 (up to first 250kb)
|
Disorders & Mutations for EXOSC5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 606492
|
Medical News for EXOSC5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for EXOSC5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/16 PubMed articles for EXOSC5 gene (see all 16
):- Protein-protein interactions of hCsl4p with other human exosome subunits. (PubMed id 11812149)1, 2, 3, 4 Raijmakers R....Pruijn G.J. (2002)
- Three novel components of the human exosome. (PubMed id 11110791)2, 3, 4 Brouwer R....Pruijn G.J. (2001)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- CML28 is a broadly immunogenic antigen, which is overexpressed in tumor cells. (PubMed id 12359762)3, 4 Yang X.-F.... Ritz J. (2002)
- AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. (PubMed id 11719186)3, 4 Chen C.Y....Karin M. (2001)
- The yeast exosome and human PM-Scl are related complexes of 3'-->5' exonucleases. (PubMed id 10465791)3, 4 Allmang C....Mitchell P. (1999)
- Activation of cytotoxic T lymphocytes against CML28-bearing tumors by dendritic cells transduced with a recombinant adeno-associated virus encoding the CML28 gene. (PubMed id 18157497)3 Xie L.H....Xie Y. (2008)
- Induction of CML28-specific cytotoxic T cell responses using co-transfected dendritic cells with CML28 DNA vaccine and SOCS1 small interfering RNA expression vector. (PubMed id 16815301)3 Zhou H....Huang Z. (2006)
- Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)3 Rual J.F....Vidal M. (2005)
|
Search for EXOSC5
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing EXOSC5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EXOSC5
(According to HUGE)
About This Section
| -- |
Specialized Databases showing EXOSC5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for EXOSC5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EXOSC5:

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Incremental update: 13 Oct 2009
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