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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

EXOSC4 Gene

protein-coding   GIFtS: 53
GCID: GC08P145133

exosome component 4

 Explore 4 diseases affiliated with
EXOSC4 via our new
 Human Malady Compendium 
Biological research products
for EXOSC4
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Exosome Component 41 2 3     HRrp41p1
RRP411 2 3     Ribosomal RNA-Processing Protein 412 3
SKI61 2 3     FLJ205911
P12A1     Exosome Complex Component RRP412
RRP41A1 2     Exosome Complex Exonuclease RRP412
Rrp41p1 2     Exosome Component Rrp412
Ski6p1 2     

External Ids:    HGNC: 181891   Entrez Gene: 545122   Ensembl: ENSG000001788967   OMIM: 6064915   UniProtKB: Q9NPD33   

Export aliases for EXOSC4 gene to outside databases

Previous GC identifers: GC08P145240 GC08P145205 GC08P140409


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: EXOS4_HUMAN, Q9NPD3
Function: Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates
in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved
in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing
by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts
(PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA
exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM)
by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is
involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements
(AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant
mRNAs. It seems to be involved in degradation of histone mRNA. The catalytic inactive RNA exosome core complex of 9
subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to
serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. EXOSC4 binds to
ARE-containing RNAs

Gene Wiki entry for EXOSC4 (Exosome component 4)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.1  NT_008046.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the EXOSC4 gene promoter:
         Egr-3   E2F-4   E2F-3a   E2F-5   COUP   E2F-2   c-Ets-1   E2F   E2F-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidEXOSC4 promoter sequence
   Search SABiosciences Chromatin IP Primers for EXOSC4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat EXOSC4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q24.3   Ensembl cytogenetic band:  8q24.3   HGNC cytogenetic band: 8q24.3

EXOSC4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
EXOSC4 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08P145133:  view genomic region     (about GC identifiers)

Start:
145,133,522 bp from pter      End:
145,135,551 bp from pter
Size:
2,030 bases      Orientation:
plus strand

1 alternative location:
Chr8+,PATCHES 145,147,156-145,149,185     

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: EXOS4_HUMAN, Q9NPD3 (See protein sequence)
Recommended Name: Exosome complex component RRP41  
Size: 245 amino acids; 26383 Da
Subunit: Component of the RNA exosome complex. Specifically part of the catalytically inactive RNA exosome core (Exo-9)
complex which is believed to associate with catalytic subunits EXOSC10, and DIS3 or DIS3L in cytoplasmic- and
nuclear-specific RNA exosome complex forms. Exo-9 is formed by a hexameric ring of RNase PH domain-containing subunits
specifically containing the heterodimers EXOSC4-EXOSC9, EXOSC5-EXOSC8 and EXOSC6-EXOSC7, and peripheral S1
domain-containing components EXOSC1, EXOSC2 and EXOSC3 located on the top of the ring structure. Interacts with DDX60
Subcellular location: Cytoplasm. Nucleus, nucleolus. Nucleus
Caution: The six exosome core subunits containing a RNase PH-domain are not phosphorolytically active
1 PDB 3D structure from and Proteopedia for EXOSC4:
2NN6 (3D)    

Explore the universe of human proteins at neXtProt for EXOSC4: NX_Q9NPD3

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9NPD3

  • EXOSC4 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_061910.1  
    ENSEMBL proteins: 
     ENSP00000315476   ENSP00000432661   ENSP00000436539  
    Reactome Protein details: Q9NPD3
    Human Recombinant Protein Products: 
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    Novus Biologicals EXOSC4 Proteins
    Novus Biologicals EXOSC4 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for EXOSC4

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000178exosome (RNase complex) IDA--
    GO:0005634nucleus IDA17545563
    GO:0005730nucleolus NAS11110791
    GO:0005737cytoplasm NAS11110791
    GO:0005829cytosol TAS--


    EXOSC4 for ontologies           About GeneDecksing



    EXOSC4 Antibody Products: 
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    Uscn Antibodies for EXOSC4
    Search ThermoFisher Antibodies for EXOSC4

    Assay Products for EXOSC4: 
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    Uscn ELISAs and CLIAs for EXOSC4


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    EXOSC4 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR015847 ExoRNase_PH_dom2
     IPR001247 ExoRNase_PH_dom1
     IPR020568 Ribosomal_S5_D2-typ_fold

    Graphical View of Domain Structure for InterPro Entry Q9NPD3

    ProtoNet protein and cluster: Q9NPD3

    UniProtKB/Swiss-Prot: EXOS4_HUMAN, Q9NPD3
    Similarity: Belongs to the RNase PH family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: EXOS4_HUMAN, Q9NPD3
    Function: Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates
    in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved
    in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing
    by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts
    (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA
    exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM)
    by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is
    involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements
    (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant
    mRNAs. It seems to be involved in degradation of histone mRNA. The catalytic inactive RNA exosome core complex of 9
    subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to
    serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. EXOSC4 binds to
    ARE-containing RNAs

    miRNA
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    OriGene 3'-UTR Clone: EXOSC4
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat EXOSC4
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for EXOSC4 (see all 7)
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    Gene Editing
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    Clone
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EXOSC4

    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:00001753'-5'-exoribonuclease activity NAS11110791
    GO:0004532NOT exoribonuclease activity IDA17174896
    GO:0005515protein binding IPI--
    GO:0017091AU-rich element binding IDA16912217


    EXOSC4 for ontologies           About GeneDecksing


    6 GenomeRNAi human phenotypes for EXOSC4:
     Cells with protrusions  Increased G2M DNA content  Increased circadian period len  S arrest 
     Synthetic lethal with Ras  Upregulation of Wnt/beta-caten 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/6 super-pathways (see all 6About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Destabilization of mRNA by Tristetraprolin (TTP)
    Destabilization of mRNA by Tristetraprolin (TTP)1.00
    mRNA Decay by 3' to 5' Exoribonuclease0.56
    Destabilization of mRNA by Butyrate Response Factor 1 (BRF1)0.79
    Destabilization of mRNA by KSRP0.48
    2Deadenylation-dependent mRNA decay
    Deadenylation-dependent mRNA decay1.00
    RNA degradation0.50
    3Metabolism of mRNA
    Metabolism of mRNA1.00
    Metabolism of RNA0.92
    4ATP/ITP metabolism
    ATP/ITP metabolism1.00
    ATP/ITP metabolism0.98
    5Ubiquitinated Orc1 is degraded by the proteasome
    Regulation of mRNA Stability by Proteins that Bind AU-rich Elements0.55

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for EXOSC4
        ATP/ITP metabolism


    1 GeneGo (Thomson Reuters) Pathway for EXOSC4
        ATP/ITP metabolism

    5/9        Reactome Pathways for EXOSC4 (see all 9)
        Regulation of mRNA Stability by Proteins that Bind AU-rich Elements
    Destabilization of mRNA by Butyrate Response Factor 1 (BRF1)
    Destabilization of mRNA by KSRP
    mRNA Decay by 3' to 5' Exoribonuclease
    Deadenylation-dependent mRNA decay


    1         Kegg Pathway  (Kegg details for EXOSC4):
        RNA degradation


    EXOSC4 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for EXOSC4

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/109 Interacting proteins for EXOSC4 (Q9NPD31, 2, 3 ENSP000003154764) via UniProtKB, MINT, STRING, and/or I2D (see all 109)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EXOSC1Q9Y3B21, 2, 3, ENSP000003599394EBI-371823,EBI-371892 MINT-7993644 MINT-7993893 MINT-7993837 MINT-7988296 MINT-7993717 I2D: score=4 STRING: ENSP00000359939
    EXOSC3Q9NQT51, 2, 3, ENSP000003230464EBI-371823,EBI-371866 MINT-7993644 MINT-7993837 MINT-7988296 I2D: score=7 STRING: ENSP00000323046
    EXOSC7Q150242, 3, ENSP000002655644MINT-7993644 MINT-7993893 MINT-7993837 MINT-7988296 MINT-7993717 I2D: score=4 STRING: ENSP00000265564
    EXOSC6Q5RKV62, 3, ENSP000003985974MINT-7993644 MINT-7993837 MINT-7988296 I2D: score=1 STRING: ENSP00000398597
    EXOSC2Q138681, 2, 3, ENSP000003614334EBI-371823,EBI-301735 MINT-7993644 MINT-7993893 MINT-7993837 MINT-7988296 MINT-7993717 MINT-7993943 I2D: score=11 STRING: ENSP00000361433
    About this table

    Gene Ontology (GO): 5/13 biological process terms (GO ID links to tree view) (see all 13):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000288nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay TAS--
    GO:0000460maturation of 5.8S rRNA IMP--
    GO:0000956nuclear-transcribed mRNA catabolic process IMP17545563
    GO:0006364rRNA processing NAS11110791
    GO:0010467gene expression TAS--


    EXOSC4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for EXOSC4
    Search CenterWatch for drugs/clinical trials and news about EXOSC4 / EXOS4 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for EXOSC4 gene: 
    NM_019037.2  

    Unigene Cluster for EXOSC4:

    Exosome component 4
    Hs.632041  [show with all ESTs]
    Unigene Representative Sequence: BM911415
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000316052(uc003zau.3) ENST00000525936 ENST00000527954

    miRNA
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat EXOSC4
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat EXOSC4

    Additional cDNA sequence: 

    AF281133.1 AK000598.1 BC002777.2 

    5 DOTS entries:

    DT.452652  DT.40133087  DT.92424241  DT.120630996  DT.97842770 

    24/108 AceView cDNA sequences (see all 108):

    AK000598 BQ055595 BM552746 BU623773 BQ233429 BU726431 AW593482 BU622874 
    CD673896 AI652670 F34414 BQ721052 BQ059657 AI073445 BM670476 BC002777 
    BM700289 BM839994 BG699798 AA435870 AW406799 BM564290 BU627720 AF281133 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    EXOSC4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TCCAGAATAA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See EXOSC4 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for EXOSC4

    SOURCE GeneReport for Unigene cluster: Hs.632041
        SABiosciences Custom PCR Arrays for EXOSC4
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for EXOSC4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for EXOSC4 gene from 8/35 species (see all 35)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia EXOSC46
    --
    73(a)
    1 ↔ 1
    AAWZ02038744(4435-8039)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.80742 Xenopus laevis transcribed sequence with moderate similarity more 81.03(n)    BJ065907.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc731752 putative exosome complex exonuclease RRP41 77.29(n)   393712  BC059525.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Ski61 CG15481-PA 58.44(n)
    55.07(a)
      34721  NM_135774.2  NP_609618.2 
    worm
    (Caenorhabditis elegans)
    Secernentea exos-4.11 EXOSome (multiexonuclease complex) component 49.17(n)
    43.75(a)
      178261  NM_001026103.5  NP_001021274.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes SKI61 Ski6p 43.64(n)
    36.02(a)
      853109   NP_011711.3 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons RRP411 exosome complex component RRP41 51.57(n)
    48.29(a)
      825335  NM_116027.4  NP_191721.1 
    rice
    (Oryza sativa)
    Liliopsida --
    exosome complex exonuclease, putative, expressed
    48(a)
    1 ↔ 1
    9(3958855-3964192)


    ENSEMBL Gene Tree for EXOSC4 (if available)
    TreeFam Gene Tree for EXOSC4 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for EXOSC4 gene
    EXOSC62  

    EXOSC4 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/100 NCBI SNPs in EXOSC4 are shown (see all 100    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs770832091,2
    C,--145131542(+) GTAGCG/AGCTAT 1 -- us2k12Minor allele frequency- A:0.17NA WA 120
    rs1478535781,2
    --145131568(+) GACACC/TTTAGG 1 -- us2k10--------
    rs1905112751,2
    --145131597(+) CTCATC/TGTCCT 1 -- us2k10--------
    rs755738471,2
    F,--145131645(+) AGTCCA/GCAGAG 1 -- us2k11Minor allele frequency- G:0.03WA 118
    rs798407661,2
    F,--145131673(+) CTTCCC/TGCATG 1 -- us2k11Minor allele frequency- T:0.16WA 118
    rs1400604831,2
    --145131674(+) TTCCCA/GCATGC 1 -- us2k10--------
    rs1498847011,2
    --145131679(+) GCATGC/TGGCAA 1 -- us2k10--------
    rs1165530171,2
    F,--145131716(+) GGCCAT/GGCGTG 1 -- us2k11Minor allele frequency- G:0.15WA 118
    rs1161227811,2
    F,--145131718(+) CCATGC/TGTGGT 1 -- us2k11Minor allele frequency- T:0.14WA 118
    rs1162357201,2
    F,--145131726(+) GGTGGC/TGGGAG 1 -- us2k11Minor allele frequency- T:0.03WA 118

    HapMap Linkage Disequilibrium report for EXOSC4 (145133522 - 145135551 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 6 variations for EXOSC4
         6 CNVs: 23290 30304 53614 30305 3751 30306

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    EXOSC4 for disorders           About GeneDecksing

    OMIM gene information: 606491    OMIM disorders: --

    4 diseases for EXOSC4:    About MalaCards
    mouth disease    hepatitis a    hepatitis    malaria


    Export disorders for EXOSC4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for EXOSC4 gene, integrated from 9 sources (see all 33):
    (articles sorted by number of sources associating them with EXOSC4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Three novel components of the human exosome. (PubMed id 11110791)1, 2, 3 Brouwer R....Pruijn G.J. (2001)
    2. Dis3-like 1: a novel exoribonuclease associated with the human exosome. (PubMed id 20531389)1, 2 Staals R.H....Pruijn G.J. (2010)
    3. Degradation of histone mRNA requires oligouridylation followed by decapping and simultaneous degradation of the mRNA both 5' to 3' and 3' to 5'. (PubMed id 18172165)1, 2 Mullen T.E. and Marzluff W.F. (2008)
    4. Human cell growth requires a functional cytoplasmic exosome, which is involved in various mRNA decay pathways. (PubMed id 17545563)1, 2 van Dijk E.L....Pruijn G.J. (2007)
    5. Reconstitution, activities, and structure of the eukaryotic RNA exosome. (PubMed id 17174896)1, 2 Liu Q.... Lima C.D. (2006)
    6. Sequence-specific RNA binding mediated by the RNase PH domain of components of the exosome. (PubMed id 16912217)1, 2 Anderson J.R....Wilusz J. (2006)
    7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    9. AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. (PubMed id 11719186)1, 2 Chen C.-Y.... Karin M. (2001)
    10. The yeast exosome and human PM-Scl are related complexes of 3'-->5' exonucleases. (PubMed id 10465791)1, 2 Allmang C....Mitchell P. (1999)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
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      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 54512 HGNC: 18189 AceView: EXOSC4 Ensembl:ENSG00000178896 euGenes: HUgn54512
    ECgene: EXOSC4 Kegg: 54512 H-InvDB: EXOSC4

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for EXOSC4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for EXOSC4 gene:
    Search GeneIP for patents involving EXOSC4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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     Regulatory tfbs in EXOSC4 promoter
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    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

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