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Aliases for EXOC3-AS1 Gene

Subcategory (RNA class) for EXOC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EXOC3-AS1 Gene

  • EXOC3 Antisense RNA 1 2 3 4
  • C5orf55 3 4
  • Chromosome 5 Open Reading Frame 55 2
  • Uncharacterized Protein C5orf55 3
  • EXOC3 Antisense Gene Protein 1 4

External Ids for EXOC3-AS1 Gene

Previous Symbols for EXOC3-AS1 Gene

  • C5orf55

Summaries for EXOC3-AS1 Gene

GeneCards Summary for EXOC3-AS1 Gene

EXOC3-AS1 (EXOC3 Antisense RNA 1) is a RNA Gene, and belongs to non-coding RNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EXOC3-AS1 Gene

Genomics for EXOC3-AS1 Gene

Genomic Location for EXOC3-AS1 Gene

Start:
441,498 bp from pter
End:
443,160 bp from pter
Size:
1,663 bases
Orientation:
Minus strand

Genomic View for EXOC3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for EXOC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EXOC3-AS1 Gene

No data available for Regulatory Elements for EXOC3-AS1 Gene

Proteins for EXOC3-AS1 Gene

  • Protein details for EXOC3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N2X6-EXAS1_HUMAN
    Recommended name:
    Uncharacterized protein EXOC3-AS1
    Protein Accession:
    Q8N2X6
    Secondary Accessions:
    • Q96CR9

    Protein attributes for EXOC3-AS1 Gene

    Size:
    119 amino acids
    Molecular mass:
    12661 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH14011.2; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for EXOC3-AS1 Gene

Proteomics data for EXOC3-AS1 Gene at MOPED

Post-translational modifications for EXOC3-AS1 Gene

No Post-translational modifications

Other Protein References for EXOC3-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for EXOC3-AS1 Gene

Domains for EXOC3-AS1 Gene

Protein Domains for EXOC3-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with EXOC3-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for EXOC3-AS1 Gene

Function for EXOC3-AS1 Gene

Gene Ontology (GO) - Molecular Function for EXOC3-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with EXOC3-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for EXOC3-AS1 Gene

Localization for EXOC3-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for EXOC3-AS1 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for EXOC3-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with EXOC3-AS1: view

Pathways for EXOC3-AS1 Gene

SuperPathways for EXOC3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EXOC3-AS1 Gene

None

No data available for Pathways by source for EXOC3-AS1 Gene

Transcripts for EXOC3-AS1 Gene

mRNA/cDNA for EXOC3-AS1 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for EXOC3-AS1 Gene

No ASD Table

Relevant External Links for EXOC3-AS1 Gene

GeneLoc Exon Structure for
EXOC3-AS1
ECgene alternative splicing isoforms for
EXOC3-AS1

Expression for EXOC3-AS1 Gene

mRNA expression in normal human tissues for EXOC3-AS1 Gene

genes like me logo Genes that share expressions with EXOC3-AS1: view

Orthologs for EXOC3-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for EXOC3-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C5orf55 37
  • 94 (a)
OneToOne
LOC750771 36
  • 97.76 (n)
  • 94.12 (a)
Species with no ortholog for EXOC3-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for EXOC3-AS1 Gene

ENSEMBL:
Gene Tree for EXOC3-AS1 (if available)
TreeFam:
Gene Tree for EXOC3-AS1 (if available)

Paralogs for EXOC3-AS1 Gene

No data available for Paralogs for EXOC3-AS1 Gene

Variants for EXOC3-AS1 Gene

Sequence variations from dbSNP and Humsavar for EXOC3-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs2561681 -- 441,011(-) CTTGC(C/T)GTCCT downstream-variant-500B
rs17455966 -- 441,070(+) GGTCA(C/T)GTCCT downstream-variant-500B
rs138906088 -- 441,092(+) GAATC(C/T)ACTTG downstream-variant-500B
rs199888652 -- 441,008(+) TGTAG(A/G)ACGGC downstream-variant-500B
rs377414286 -- 441,105(+) CAATC(A/G)ACATG downstream-variant-500B

Relevant External Links for EXOC3-AS1 Gene

HapMap Linkage Disequilibrium report
EXOC3-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for EXOC3-AS1 Gene

Disorders for EXOC3-AS1 Gene

No disorders were found for EXOC3-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for EXOC3-AS1 Gene

Publications for EXOC3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for EXOC3-AS1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate EXOC3-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for EXOC3-AS1
    • Block miRNA regulation of EXOC3-AS1 using miScript Target Protectors
    • antibodies-online proteins for EXOC3-AS1
    • antibodies-online antibodies for EXOC3-AS1
    • antibodies-online kits for EXOC3-AS1

    Sources for EXOC3-AS1 Gene

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