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Aliases for EXOC3-AS1 Gene

Subcategory (RNA class) for EXOC3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EXOC3-AS1 Gene

  • EXOC3 Antisense RNA 1 2 3 4
  • C5orf55 3 4
  • Chromosome 5 Open Reading Frame 55 2
  • Uncharacterized Protein C5orf55 3
  • EXOC3 Antisense Gene Protein 1 4

External Ids for EXOC3-AS1 Gene

Previous HGNC Symbols for EXOC3-AS1 Gene

  • C5orf55

Summaries for EXOC3-AS1 Gene

GeneCards Summary for EXOC3-AS1 Gene

EXOC3-AS1 (EXOC3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EXOC3-AS1 Gene

Genomics for EXOC3-AS1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for EXOC3-AS1 Gene

Start:
441,498 bp from pter
End:
443,160 bp from pter
Size:
1,663 bases
Orientation:
Minus strand

Genomic View for EXOC3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for EXOC3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EXOC3-AS1 Gene

No data available for Regulatory Elements for EXOC3-AS1 Gene

Proteins for EXOC3-AS1 Gene

  • Protein details for EXOC3-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N2X6-EXAS1_HUMAN
    Recommended name:
    Uncharacterized protein EXOC3-AS1
    Protein Accession:
    Q8N2X6
    Secondary Accessions:
    • Q96CR9

    Protein attributes for EXOC3-AS1 Gene

    Size:
    119 amino acids
    Molecular mass:
    12661 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH14011.2; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for EXOC3-AS1 Gene

Proteomics data for EXOC3-AS1 Gene at MOPED

Post-translational modifications for EXOC3-AS1 Gene

No Post-translational modifications

Other Protein References for EXOC3-AS1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for EXOC3-AS1 Gene

Domains for EXOC3-AS1 Gene

Protein Domains for EXOC3-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with EXOC3-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EXOC3-AS1 Gene

Function for EXOC3-AS1 Gene

Gene Ontology (GO) - Molecular Function for EXOC3-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with EXOC3-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for EXOC3-AS1 Gene

Localization for EXOC3-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for EXOC3-AS1 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for EXOC3-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with EXOC3-AS1: view

No data available for Subcellular locations from COMPARTMENTS for EXOC3-AS1 Gene

Pathways for EXOC3-AS1 Gene

SuperPathways for EXOC3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for EXOC3-AS1 Gene

None

No data available for Pathways by source for EXOC3-AS1 Gene

Transcripts for EXOC3-AS1 Gene

mRNA/cDNA for EXOC3-AS1 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate EXOC3-AS1
    • Block miRNA regulation of EXOC3-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for EXOC3-AS1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for EXOC3-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for EXOC3-AS1 Gene

    No ASD Table

    Relevant External Links for EXOC3-AS1 Gene

    GeneLoc Exon Structure for
    EXOC3-AS1
    ECgene alternative splicing isoforms for
    EXOC3-AS1

    Expression for EXOC3-AS1 Gene

    mRNA expression in normal human tissues for EXOC3-AS1 Gene

    genes like me logo Genes that share expressions with EXOC3-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for EXOC3-AS1 Gene

    Orthologs for EXOC3-AS1 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for EXOC3-AS1 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia C5orf55 36
    • 94 (a)
    OneToOne
    LOC750771 35
    • 97.76 (n)
    • 94.12 (a)
    Species with no ortholog for EXOC3-AS1:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for EXOC3-AS1 Gene

    ENSEMBL:
    Gene Tree for EXOC3-AS1 (if available)
    TreeFam:
    Gene Tree for EXOC3-AS1 (if available)

    Paralogs for EXOC3-AS1 Gene

    No data available for Paralogs for EXOC3-AS1 Gene

    Variants for EXOC3-AS1 Gene

    Sequence variations from dbSNP and Humsavar for EXOC3-AS1 Gene

    SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
    rs2561681 -- 441,011(-) CTTGC(C/T)GTCCT downstream-variant-500B
    rs17455966 -- 441,070(+) GGTCA(C/T)GTCCT downstream-variant-500B
    rs138906088 -- 441,092(+) GAATC(C/T)ACTTG downstream-variant-500B
    rs199888652 -- 441,008(+) TGTAG(A/G)ACGGC downstream-variant-500B
    rs377414286 -- 441,105(+) CAATC(A/G)ACATG downstream-variant-500B

    Relevant External Links for EXOC3-AS1 Gene

    HapMap Linkage Disequilibrium report
    EXOC3-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for EXOC3-AS1 Gene

    Disorders for EXOC3-AS1 Gene

    No disorders were found for EXOC3-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for EXOC3-AS1 Gene

    Publications for EXOC3-AS1 Gene

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
    2. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
    3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
    4. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

    Products for EXOC3-AS1 Gene

    • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
    • QIAGEN qRT-PCR Assays for microRNAs that regulate EXOC3-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for EXOC3-AS1
      • Block miRNA regulation of EXOC3-AS1 using miScript Target Protectors
      • antibodies-online proteins for EXOC3-AS1
      • antibodies-online antibodies for EXOC3-AS1
      • antibodies-online kits for EXOC3-AS1

      Sources for EXOC3-AS1 Gene

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