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Aliases for EWSAT1 Gene

Subcategory (RNA class) for EWSAT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EWSAT1 Gene

  • Ewing Sarcoma Associated Transcript 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 277 2 3
  • Transmembrane Protein 84 2 3
  • Testicular Tissue Protein Li 207 3
  • Non-Protein Coding RNA 277 2
  • NCRNA00277 3
  • LINC00277 3
  • TMEM84 3

External Ids for EWSAT1 Gene

Previous HGNC Symbols for EWSAT1 Gene

  • TMEM84
  • NCRNA00277
  • LINC00277

Summaries for EWSAT1 Gene

GeneCards Summary for EWSAT1 Gene

EWSAT1 (Ewing Sarcoma Associated Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with EWSAT1 include Ewing Sarcoma.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EWSAT1 Gene

Genomics for EWSAT1 Gene

Regulatory Elements for EWSAT1 Gene

Enhancers for EWSAT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G069073 1.3 ENCODE dbSUPER 0.7 +1.7 1660 1.4 FOXA2 SIN3A GLI4 ZNF2 YY1 GLIS2 ZNF416 ZNF207 KLF7 ZNF548 NOX5 EWSAT1 ENSG00000259222
GH15G069058 1.4 Ensembl ENCODE dbSUPER 0.4 -13.3 -13269 1.8 PKNOX1 ARID4B SIN3A ZNF2 ZNF143 KLF7 ZNF548 TSHZ1 REST SMARCB1 PIR43046 EWSAT1
GH15G069065 0.8 dbSUPER 0.4 -5.4 -5440 3.7 NFIB THRB RAD21 RARA TCF12 SCRT2 ZSCAN5C SP5 ZNF518A NFIC CLN6 EWSAT1 PIR43046
GH15G069060 0.6 ENCODE dbSUPER 0.4 -12.1 -12056 0.2 GABPA PIR43046 EWSAT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EWSAT1 on UCSC Golden Path with GeneCards custom track

Promoters for EWSAT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000078585 1375 1000 FOXA2 SIN3A GLI4 ZNF2 YY1 GLIS2 ZNF416 ZNF207 KLF7 ZNF548

Genomic Location for EWSAT1 Gene

Chromosome:
15
Start:
69,072,926 bp from pter
End:
69,095,824 bp from pter
Size:
22,899 bases
Orientation:
Plus strand

Genomic View for EWSAT1 Gene

Genes around EWSAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EWSAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EWSAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EWSAT1 Gene

Proteins for EWSAT1 Gene

Post-translational modifications for EWSAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EWSAT1 Gene

Domains & Families for EWSAT1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with EWSAT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EWSAT1 Gene

Function for EWSAT1 Gene

genes like me logo Genes that share phenotypes with EWSAT1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EWSAT1 Gene

Localization for EWSAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EWSAT1 Gene

Pathways & Interactions for EWSAT1 Gene

SuperPathways for EWSAT1 Gene

No Data Available

Interacting Proteins for EWSAT1 Gene

Gene Ontology (GO) - Biological Process for EWSAT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EWSAT1 Gene

Drugs & Compounds for EWSAT1 Gene

No Compound Related Data Available

Transcripts for EWSAT1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for EWSAT1 Gene

No ASD Table

Relevant External Links for EWSAT1 Gene

GeneLoc Exon Structure for
EWSAT1
ECgene alternative splicing isoforms for
EWSAT1

Expression for EWSAT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EWSAT1 Gene

NURSA nuclear receptor signaling pathways regulating expression of EWSAT1 Gene:

EWSAT1
genes like me logo Genes that share expression patterns with EWSAT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EWSAT1 Gene

Orthologs for EWSAT1 Gene

Evolution for EWSAT1 Gene

ENSEMBL:
Gene Tree for EWSAT1 (if available)
TreeFam:
Gene Tree for EWSAT1 (if available)

No data available for Orthologs for EWSAT1 Gene

Paralogs for EWSAT1 Gene

No data available for Paralogs for EWSAT1 Gene

Variants for EWSAT1 Gene

Sequence variations from dbSNP and Humsavar for EWSAT1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000164110 -- 69,079,834(+) ACCCA(A/G)TTTTC upstream-variant-2KB
rs1000211337 -- 69,092,737(+) GTATG(C/T)ATGTT intron-variant
rs1000275900 -- 69,087,611(+) CACCT(A/T)ACAGA intron-variant
rs1000407364 -- 69,081,966(+) GGAGA(C/T)TCAGA intron-variant
rs1000562267 -- 69,084,875(+) GCCTG(C/G)TGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EWSAT1 Gene

Variant ID Type Subtype PubMed ID
nsv1050604 CNV gain 25217958
nsv569808 CNV loss 21841781

Relevant External Links for EWSAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EWSAT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EWSAT1 Gene

Disorders for EWSAT1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for EWSAT1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
ewing sarcoma
  • neuroepithelioma
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for EWSAT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EWSAT1
genes like me logo Genes that share disorders with EWSAT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for EWSAT1 Gene

Publications for EWSAT1 Gene

  1. Long non-coding RNA EWSAT1 promotes human nasopharyngeal carcinoma cell growth in vitro by targeting miR-326/-330-5p. (PMID: 27816050) Song P. … Yin S.C. (Aging (Albany NY) 2016) 2 3 64
  2. Long Noncoding RNA EWSAT1 Promotes Osteosarcoma Cell Growth and Metastasis Through Suppression of MEG3 Expression. (PMID: 27860482) Sun L. … Cui T. (DNA Cell Biol. 2016) 2 3 64
  3. Long noncoding RNA EWSAT1-mediated gene repression facilitates Ewing sarcoma oncogenesis. (PMID: 25401475) Marques Howarth M. … Sweet-Cordero E.A. (J. Clin. Invest. 2014) 2 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64

Products for EWSAT1 Gene

Sources for EWSAT1 Gene

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