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Aliases for EWSAT1 Gene

Subcategory (RNA class) for EWSAT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EWSAT1 Gene

  • Ewing Sarcoma Associated Transcript 1 2 3
  • Long Intergenic Non-Protein Coding RNA 277 2 3
  • Transmembrane Protein 84 2 3
  • Non-Protein Coding RNA 277 2
  • NCRNA00277 3
  • LINC00277 3
  • TMEM84 3

External Ids for EWSAT1 Gene

Previous HGNC Symbols for EWSAT1 Gene

  • TMEM84
  • NCRNA00277
  • LINC00277

Summaries for EWSAT1 Gene

GeneCards Summary for EWSAT1 Gene

EWSAT1 (Ewing Sarcoma Associated Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EWSAT1 Gene

Genomics for EWSAT1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for EWSAT1 Gene

Start:
69,072,926 bp from pter
End:
69,095,824 bp from pter
Size:
22,899 bases
Orientation:
Plus strand

Genomic View for EWSAT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for EWSAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EWSAT1 Gene

No data available for Regulatory Elements for EWSAT1 Gene

Proteins for EWSAT1 Gene

Post-translational modifications for EWSAT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EWSAT1 Gene

Domains for EWSAT1 Gene

Gene Families for EWSAT1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with EWSAT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EWSAT1 Gene

Function for EWSAT1 Gene

Phenotypes for EWSAT1 Gene

GenomeRNAi human phenotypes for EWSAT1:
genes like me logo Genes that share phenotypes with EWSAT1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for EWSAT1 Gene

Localization for EWSAT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EWSAT1 Gene

Pathways for EWSAT1 Gene

SuperPathways for EWSAT1 Gene

No Data Available

Interacting Proteins for EWSAT1 Gene

Gene Ontology (GO) - Biological Process for EWSAT1 Gene

None

No data available for Pathways by source for EWSAT1 Gene

Transcripts for EWSAT1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for EWSAT1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for EWSAT1 Gene

No ASD Table

Relevant External Links for EWSAT1 Gene

GeneLoc Exon Structure for
EWSAT1
ECgene alternative splicing isoforms for
EWSAT1

Expression for EWSAT1 Gene

mRNA expression in normal human tissues for EWSAT1 Gene

genes like me logo Genes that share expressions with EWSAT1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for EWSAT1 Gene

Orthologs for EWSAT1 Gene

Evolution for EWSAT1 Gene

ENSEMBL:
Gene Tree for EWSAT1 (if available)
TreeFam:
Gene Tree for EWSAT1 (if available)

No data available for Orthologs for EWSAT1 Gene

Paralogs for EWSAT1 Gene

No data available for Paralogs for EWSAT1 Gene

Variants for EWSAT1 Gene

Sequence variations from dbSNP and Humsavar for EWSAT1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs311887 -- 69,079,183(+) ccaaa(A/G)tgctg upstream-variant-2KB
rs311888 -- 69,080,949(+) GCTCT(A/G)TGCAT nc-transcript-variant
rs311894 -- 69,082,724(+) TTACA(A/G)GAGTC intron-variant
rs311895 -- 69,082,959(+) TAGAG(A/G)ATGAG intron-variant
rs311896 -- 69,083,430(+) TCCGC(A/C)TCCTG intron-variant

Relevant External Links for EWSAT1 Gene

HapMap Linkage Disequilibrium report
EWSAT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for EWSAT1 Gene

Disorders for EWSAT1 Gene

No disorders were found for EWSAT1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for EWSAT1 Gene

Publications for EWSAT1 Gene

  1. Long noncoding RNA EWSAT1-mediated gene repression facilitates Ewing sarcoma oncogenesis. (PMID: 25401475) Marques Howarth M. … Sweet-Cordero E.A. (J. Clin. Invest. 2014) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3

Products for EWSAT1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate EWSAT1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for EWSAT1
    • Block miRNA regulation of EWSAT1 using miScript Target Protectors

    Sources for EWSAT1 Gene

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