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Aliases & Descriptions for ETV4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases E1A-F 1 , 2 , 3 E1AF 1 , 2 , 3 PEA3 2 PEAS3 2
Descriptions Adenovirus E1A enhancer-binding protein 3 E1A enhancer binding protein 2 EWS protein/E1A enhancer binding protein chimera 2 ets variant 4 2 ets variant gene 4 (E1A enhancer binding protein, E1AF) 2 ets variant gene 4 (E1A enhancer-binding protein, E1AF) 1 , 2 polyomavirus enhancer activator-3 2
Search outside databases for aliases for ETV4 genePrevious GC identifers: GC17U990026 GC17M043782 GC17M041615 GC17M042080
Summaries for ETV4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: ETV4_HUMAN, P43268 Function : Transcriptional activator that binds to the enhancer of the adenovirus E1A gene; thecore-binding sequence is 5'[AC]GGA[AT]GT-3'
Gene Wiki entry for ETV4
Genomic Location for ETV4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ETV4 gene Entrez Gene cytogenetic band: 17q21 Ensembl cytogenetic band: 17q21.31 HGNC cytogenetic band: 17q21 ETV4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M038960:
(about GC identifiers )
Start:
38,960,737 bp from pter
End:
38,979,288 bp from pter
Size:
18,552 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000017.9 NT_010783.14 Proteins for ETV4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ETV4_HUMAN, P43268 (See
protein sequence )Recommended Name: ETS translocation variant 4 Size : 484 amino acids; 53938 Da
Subcellular location : Nucleus
Secondary accessions : A8K314 Q96AW9
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001073143.1 NP_001977.1 ENSEMBL proteins: ENSP00000321835 ENSP00000377273 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): ETV4 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ETV4: Assays for ETV4:
Protein
Domains/ Families for ETV4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P43268 ProtoNet protein and cluster: P43268
1 Blocks protein family : IPB006715 PEA3-type ETS-domain transcription factor UniProtKB/Swiss-Prot: ETV4_HUMAN, P43268 Similarity : Belongs to the ETS familySimilarity : Contains 1 ETS DNA-binding domain
Gene Function for ETV4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
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Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001079675 Applied Biosystems Silencer ® siRNAs for ETV4 Sigma-Aldrich siRNA for ETV4 Sigma-Aldrich shRNA for ETV4 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001079675                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001079675                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001079675  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001079675 UniProtKB/Swiss-Prot: ETV4_HUMAN, P43268 Function : Transcriptional activator that binds to the enhancer of the adenovirus E1A gene; thecore-binding sequence is 5'[AC]GGA[AT]GT-3'
Genatlas biochemistry entry for ETV4 :ETS variant gene 4,divergent member of the winged helix-turn-helix superfamily,activating matrixmetalloproteinase genes,associated with invasion and metastasis of tumor cell
6 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Etv4) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003700 transcription factor activity
IEA -- GO:0016563 transcription activator activity
NAS -- GO:0043565 sequence-specific DNA binding
IEA --
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Pathways & Interactions for ETV4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for ETV4 5/43 Interacting proteins for ETV4 (ENSP00000321835 3 ) via UniProtKB, MINT, and/or STRING (see all 43
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006355 regulation of transcription, DNA-dependent
NAS -- GO:0008045 motor axon guidance
IEA -- GO:0009887 organ morphogenesis
IEA -- GO:0045941 positive regulation of transcription
IEA --
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Drugs & Compounds for ETV4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ETV4 10 Novoseek chemical compound relationships for ETV4 gene
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Transcripts for ETV4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001079675 Sigma-Aldrich siRNA for ETV4 Sigma-Aldrich shRNA for ETV4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001079675 NM_001986
REFSEQ mRNAs for ETV4 gene (2 alternative transcripts): NM_001079675.1 NM_001986.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001079675 NM_001986
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001079675                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001079675                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001079675  
Additional cDNA sequence: AK290429.1 AK298872.1 AK299019.1 AK312934.1 AK315961.1 BC016623.1 D12765.1 DQ396625.1 DQ396626.1 EU693078.1 EU693079.1 U18018.1
14 DOTS entries : DT.92427459 DT.215718 DT.97845325 DT.86852041 DT.100750074 DT.100750075 DT.100750073 DT.95270495 DT.120927690 DT.92427471 DT.100742349 DT.120927835 DT.92028466 DT.95270493
24/154 AceView cDNA sequences (see all 154
):BM980627 D12765 BU554006 BQ954778 R07222 CA417574 BM795147 AA314536 BM555272 BC016623 BX332185 BM825256 AI469414 AW007654 BQ961355 BC007242 BE349131 NM_001986 AA639480 AI346513 BQ000979 BM452151 AI973148 BQ684464
highest scoring ESTs for ETV4 :BC016623 BE621418 BF983153 BM795254 BM818524 BM856372 D12765 U18018 AA010400 AA010506
Unigene Cluster for ETV4: Ets variant 4 Hs.434059 [show with all ESTs ] Unigene Representative Sequence: NM_001079675 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for ETV4 (see all 12
) ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b · 10c ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ SP1 :     -   -     -   -   -       -     -                   -           SP2 :           -   -   -       -     -                             SP3 :     -   -   -   -   -   -       -     -                             SP4 :         -   -   -   -       -     -                             SP5 :                     -     -       -                      
ExUns: 15a · 15b SP1 :     SP2 :     SP3 :     SP4 :     SP5 :    
About this scheme ECgene alternative splicing isoforms for ETV4 2 Ensembl transcripts including schematic representations : ENST00000319349
ENST00000393664
Expression for ETV4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ETV4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ETV4 1 / 2 / 3
4 probe-sets matching ETV4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAGAAGGTGGSOURCE GeneReport for Unigene cluster: Hs.434059 Expression variation in blood from EXPOLDB for ETV4
Orthologs for ETV4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ETV4 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for ETV4 ENSEMBL Gene Tree for ETV4 Paralogs for ETV4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ETV4 gene ETV1 2 ETV5 2
SNPs/Variants for ETV4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ETV4 (up to first 250kb)
Disorders & Mutations for ETV4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600711 10/19 Novoseek disease relationships for ETV4 gene (see all 19
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
breast cancer
47.00
47
16652376 (5), 11821815 (4), 16752078 (4), 14633660 (3) (see all 17 )
metastasis
46.00
15
18425363 (2), 17060941 (2), 9467955 (1), 14604892 (1) (see all 13 )
tumors
42.10
68
12684413 (4), 14633660 (4), 9380403 (3), 18511876 (3) (see all 32 )
ovarian cancer
37.41
4
16652376 (1), 15387369 (1), 17475671 (1)
cancer
32.21
17
9509127 (3), 17168666 (2), 16406575 (2), 15695237 (2) (see all 11 )
breast carcinoma
30.37
4
15387369 (3), 14990565 (1)
mammary tumor
30.30
3
15629152 (1), 11467448 (1)
colon cancer
22.13
1
15695237 (1)
adenoma
21.93
5
15800927 (2), 15695237 (2)
carcinoma
21.37
14
12684413 (4), 15800927 (3), 12851697 (1), 18720079 (1) (see all 8 )
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Medical News for ETV4 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ETV4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/176 PubMed articles for ETV4 gene (see all 176
): Isolation of a cDNA encoding the adenovirus E1A enhancer binding protein: a new human member of the ets oncogene family. (PubMed id 8441666) 1, 3, 4 Higashino F.... Fujinaga K. (1993) Genomic organization of the human e1af gene, a member of Ets transcription factors. (PubMed id 10564827) 1, 3, 4 Coutte L.... de Launoit Y. (1999) Assignment of the ets-related transcription factor E1A-F gene (ETV4) to human chromosome region 17q21. (PubMed id 8530053) 1, 2, 3 Isobe M....Fujinaga K. (1995) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) 22 genes from chromosome 17q21: cloning, sequencing, and characterization of mutations in breast cancer families and tumors. (PubMed id 7774926) 3, 4 Friedman L.S....King M.-C. (1995) Expression of PEA3 and lack of correlation between PEA3 and HER-2/neu expression in breast cancer. (PubMed id 16752078) 1, 3 Xia W.Y....Hung M.C. (2006) PEA3 cooperates with c-Jun in regulation of HER2/neu transcription. (PubMed id 16786139) 1, 3 Matsui K....Kitajima I. (2006) PEA3 is the second Ets family transcription factor involved in tumor progression in ovarian carcinoma. (PubMed id 12684413) 1, 3 Davidson B....Reich R. (2003) PEA3 is necessary for optimal epidermal growth factor receptor-stimulated matrix metalloproteinase expression and invasion of ovarian tumor cells. (PubMed id 17475671) 1, 3 Cowden Dahl K.D....Hudson L.G. (2007) Antitumor activity of an Ets protein, PEA3, in breast cancer cell lines MDA-MB-361DYT2 and BT474M1. (PubMed id 16652376) 1, 3 Yu Z....Hung M.C. (2006)
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Genome Databases showing ETV4
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ETV4
(According to HUGE )
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Specialized Databases showing ETV4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ETV4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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