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ETV3 Gene

protein-coding GIFtS: 47

GC01M155357

ets variant 3
(Previous names: ets variant gene 3, ETS family transcriptional repressor, ets variant gene 3 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
FLJ79173 ^²
METS ^², ³
OTTHUMP00000032196 ^²
PE-1 ^¹, ², ³
PE1 ^², ³, ⁵
bA110J1.4 ^²

Descriptions
ETS domain transcriptional repressor PE1 ^³
Mitogenic Ets transcriptional suppressor ^³
ets variant 3 ^²
ets variant gene 3 ^¹, ²
ets variant gene 3, ETS family transcriptional repressor ^¹, ²

External Ids
HGNC: 3492¹
Entrez Gene: 2117²
UniProtKB: P41162³
Ensembl: ENSG00000117036⁷

Search outside databases for aliases for ETV3 gene

Previous GC identifers: GC01M154963 GC01M152859 GC01M153872 GC01M154311 GC01M153907

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ETV3_HUMAN, P41162

Function: Transcriptional repressor that contribute to growth arrest during terminal macrophage

differentiation by repressing target genes involved in Ras-dependent proliferation. Represses MMP1

promoter activity

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the ETV3 gene

Entrez Gene cytogenetic band: 1q21-q23 Ensembl cytogenetic band: 1q23.1 HGNC cytogenetic band: 1q21-q23

ETV3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure

GeneLoc location for GC01M155357: (about GC identifiers)

Start:	155,361,257 bp from pter
End:	155,374,801 bp from pter
Size:	13,545 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000001.9 NT_004487.18

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ETV3_HUMAN, P41162 (See protein sequence)

Recommended Name: ETS translocation variant 3

Size: 512 amino acids; 57001 Da

Subcellular location: Nucleus (Potential)

Sequence caution: Sequence=AAA60949.1; Type=Frameshift; Positions=174;

Secondary accessions: Q8TAC8 Q9BX30

Alternative splicing: 2 isoforms: P41162-1 P41162-2

REFSEQ proteins (2 alternative transcripts):

NP_001138784.1 NP_005231.1

ENSEMBL proteins:

ENSP00000357175 ENSP00000327316

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (ETV3)
	Human Recombinant Proteins from Abnova (ETV3)

OriGene Purified Recombinant Human Protein: ETV3

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	NAS	--

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Antibodies for ETV3:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for ETV3
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (ETV3), each with their Abpromise^SM
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for ETV3

Assays for ETV3:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry P41162

ProtoNet protein and cluster: P41162

UniProtKB/Swiss-Prot: ETV3_HUMAN, P41162

Similarity: Belongs to the ETS family

Similarity: Contains 1 ETS DNA-binding domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ETV3)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (ETV3)

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_001145312

Applied Biosystems Silencer® siRNAs for ETV3

Sigma-Aldrich siRNA for ETV3

Sigma-Aldrich shRNA for ETV3

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for ETV3
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001145312
Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001145312
untagged cDNA clones in CMV expression vector (see all 2): NM_001145312

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_001145312

UniProtKB/Swiss-Prot: ETV3_HUMAN, P41162

Function: Transcriptional repressor that contribute to growth arrest during terminal macrophage

differentiation by repressing target genes involved in Ras-dependent proliferation. Represses MMP1

promoter activity

Genatlas biochemistry entry for ETV3:

ETS variant gene 3,expressed in numerous cell lines,divergent member of the winged helix-turn-helix

superfamily

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003674	molecular_function	ND	--
GO:0003700	transcription factor activity	IEA	--
GO:0043565	sequence-specific DNA binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Gene Network Central^TM Interacting Genes and Proteins Network for ETV3

5/21 Interacting proteins for ETV3 (ENSP00000357175³) via UniProtKB, MINT, and/or STRING (see all 21 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
DDX20	ENSP00000358716³	STRING (score=.987)
PHF12	ENSP00000329933³	STRING (score=.922)
ENSG00000211646	ENSP00000374827³	STRING (score=.899)
HDAC2	ENSP00000357621³	STRING (score=.899)
HDAC5	ENSP00000225983³	STRING (score=.899)

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3 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006350	transcription	IEA	--
GO:0006355	regulation of transcription, DNA-dependent	IEA	--
GO:0008150	biological_process	ND	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for ETV3

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (ETV3)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (ETV3)

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_001145312

Sigma-Aldrich siRNA for ETV3

Sigma-Aldrich shRNA for ETV3

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_005240

REFSEQ mRNAs for ETV3 gene (2 alternative transcripts):

NM_001145312.1 NM_005240.1

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_005240

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001145312
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001145312
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_001145312

Additional cDNA sequence:

AF218540.1 AK304789.1 AK316274.1 BC022868.1 L16464.1

4 DOTS entries:

DT.95332215 DT.404458 DT.430587 DT.95254527

24/30 AceView cDNA sequences (see all 30 ):

AW059911 BM666885 AA948144 AF218540 AI791558 BX091144 BM695111 AA947850

BC022868 BU686728 AV660485 AI733068 AL601147 BF087762 AA915991 AI733226

NM_005240 L16464 BF176184 BG942091 M78749 AI793162 AV733666 AW893562

highest scoring ESTs for ETV3:

L16464 BC022868 BG942091 AA915991 AA948144 AF218540 AI733068 AI733226 AI791558 AI793162

Unigene Cluster for ETV3:

Ets variant 3

Hs.105636 [show with all ESTs]

Unigene Representative Sequence: AK316274

GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:

ENST00000368192 ENST00000326786

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

ETV3 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for ETV3

¹ / ² / ³

5 probe-sets matching ETV3 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
32303_at²^{, 3}	U95-A	1	1.00	1.00	0.95	0.95	L16464	1.00	1.00	1.00	1
1908_at²^{, 3}	U95-A	1	1.00	1.00	0.42	1.06	L16464	1.00	1.00	1.00	1
214480_at²^{, 3}	U133-A	1	1.00	1.00	--	--	L16464	1.00	1.00	1.00	1
214480_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
1552423_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.105636

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for ETV3 gene from 3 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
mouse (Mus musculus)	Etv3⁵	3	ets variant gene 3	--	BY124257
African clawed frog (Xenopus laevis)	Xl.32326²	--	Xenopus laevis transcribed sequence with moderate similarity more	83.37(n)	BJ626027.1
sea squirt (Ciona intestinalis)	Cin.5256²	--	Ciona intestinalis cDNA, clonecieg014f19, full insert more	77.73(n)	AK116779.1

About this table Species with no ortholog for ETV3

ENSEMBL Gene Tree for ETV3

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for ETV3 gene

ERF² ETV3L²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/40 NCBI SNPs in ETV3 are shown (see all 40 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 35)

AB	SNP ID	Valid	Chr 1 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs6427353^1,2	A,C,F,H	155376248(+)	`TGCATA/GGTACC`	1	--	ng3¹		6		EU EA WA NA	598
	rs7521824^1,2	A,F,H	155369563(+)	`atattT/Ctgaga`	1	--	ng5¹		4		EU EA WA	420
--	rs6427352^1,2	A,C	155376103(+)	`GTTGTA/GTCTTT`	1	--	ng3¹		0	--	--	--	--
	rs1467661^1,2	A,F	155375598(+)	`AAACGG/CGTGTC`	1	--	ng3¹		4		NA PA MN	436
--	rs3199902^1,2	F	155369847(-)	`TTTTTG/TTTTGT`	1	--	ut3¹		1		MN	184
	rs2231848^1,2	C	155375193(-)	`CGCCCA/CGCAAA`	1	--	ng3¹		0	--	--	--	--
	rs6704373^1,2	A,C,F,H	155371094(+)	`ATGTAG/CAACTG`	1	--	int¹		8		EU EA WA	838
	rs3737269^1,2	C,F,H	155372414(+)	`AAAAGT/CGCTAA`	1	--	int¹		18		EA NS EU WA	2442
--	rs74116988^1,2	--	155369862(+)	`CACAAC/TAACAA`	1	--	ut3¹		0	--	--	--	--
--	rs61799683^1,2	--	155369182(+)	`TTTAAA/TTGCAT`	1	--	ng5¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for ETV3 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 164873

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

9 PubMed articles for ETV3 gene:

PE-1, a novel ETS oncogene family member, localizes to chromosome 1q21-q23. (PubMed id 8020980)^{2, 3, 4} Klemsz M.... Hoffman R. (1994)
The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)^{3, 4} Gregory S.G.... Bentley D.R. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
An induced Ets repressor complex regulates growth arrest during terminal macrophage differentiation. (PubMed id 12007404)^{3, 4} Klappacher G.W.... Glass C.K. (2002)
Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study. (PubMed id 18951430)³ Anney R.J....Gill M. (2008)
Differential repression of c-myc and cdc2 gene expression by ERF and PE-1/METS. (PubMed id 17525531)³ Hester K.D....Glass C.K. (2007)
A transcriptional repressor and corepressor induced by the STAT3- regulated anti-inflammatory signaling pathway. (PubMed id 18025162)³ El Kasmi K.C.... Murray P.J. (2007)
PE-1/METS, an antiproliferative Ets repressor factor, is induced by CREB-1/CREM-1 during macrophage differentiation. (PubMed id 14754893)³ Sawka-Verhelle D....Glass C.K. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 2117	HGNC: 3492	AceView: ETV3	Ensembl:ENSG00000117036	euGenes: HUgn2117
ECgene: ETV3	H-InvDB: ETV3

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
ATLAS Chromosomes in Cancer entry for ETV3	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for ETV3
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for ETV3:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for ETV3-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for ETV3		Antibodies for ETV3
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for ETV3		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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	Tagged/untagged cDNA clones
	Validated SYBR primer pairs
	Purified proteins from HEK293T cells
	Western blot validated antibodies
	shRNA in GFP-retroviral vector

Search Tocris compounds for ETV3

Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Search Novus for antibodies for ETV3

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ETV3 Gene

protein-coding GIFtS: 47

Aliases &
Descriptions
for ETV3

Summaries
for ETV3

Genomic Location
for ETV3

Proteins
for ETV3

Protein Domains/
Families
for ETV3

Gene Function
for ETV3

Pathways & Interactions
for ETV3

Drugs & Compounds
for ETV3

Transcripts
for ETV3

Expression
for ETV3

Orthologs
for ETV3

Paralogs
for ETV3

SNPs/Variants
for ETV3

Disorders & Mutations
for ETV3

Medical News
for ETV3

Publications
for ETV3

Search for ETV3

Genome Databases showing ETV3

Other Databases showing ETV3

Specialized Databases showing ETV3

Licensable Technologies
for ETV3

Services
for ETV3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

ETV3 Gene

protein-coding GIFtS: 47

Aliases & Descriptionsfor ETV3

Summariesfor ETV3

Genomic Locationfor ETV3

Proteinsfor ETV3

Protein Domains/Familiesfor ETV3

Gene Functionfor ETV3

Pathways & Interactionsfor ETV3

Drugs & Compoundsfor ETV3

Transcriptsfor ETV3

Expression for ETV3

Orthologsfor ETV3

Paralogsfor ETV3

SNPs/Variantsfor ETV3

Disorders & Mutationsfor ETV3

Medical Newsfor ETV3

Publicationsfor ETV3

Search for ETV3

Genome Databases showing ETV3

Other Databases showing ETV3

Specialized Databases showing ETV3

Licensable Technologiesfor ETV3

Servicesfor ETV3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for ETV3

Summaries
for ETV3

Genomic Location
for ETV3

Proteins
for ETV3

Protein Domains/
Families
for ETV3

Gene Function
for ETV3

Pathways & Interactions
for ETV3

Drugs & Compounds
for ETV3

Transcripts
for ETV3

Expression
for ETV3

Orthologs
for ETV3

Paralogs
for ETV3

SNPs/Variants
for ETV3

Disorders & Mutations
for ETV3

Medical News
for ETV3

Publications
for ETV3

Licensable Technologies
for ETV3

Services
for ETV3