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Aliases for ETF1 Gene

Aliases for ETF1 Gene

  • Eukaryotic Translation Termination Factor 1 2 3 5
  • Sup45 (Yeast Omnipotent Suppressor 45) Homolog-Like 1 2 3
  • Polypeptide Chain Release Factor 1 2 3
  • Protein Cl1 3 4
  • SUP45L1 3 4
  • TB3-1 3 4
  • ERF1 3 4
  • RF1 3 4
  • Eukaryotic Peptide Chain Release Factor Subunit 1 3
  • Eukaryotic Release Factor 1 4
  • D5S1995 3
  • ERF 3

External Ids for ETF1 Gene

Previous HGNC Symbols for ETF1 Gene

  • SUP45L1
  • ERF1
  • ERF

Previous GeneCards Identifiers for ETF1 Gene

  • GC05M137716
  • GC05M137872
  • GC05M137918
  • GC05M137869
  • GC05M133032
  • GC05M137843

Summaries for ETF1 Gene

Entrez Gene Summary for ETF1 Gene

  • This gene encodes a class-1 polypeptide chain release factor. The encoded protein plays an essential role in directing termination of mRNA translation from the termination codons UAA, UAG and UGA. This protein is a component of the SURF complex which promotes degradation of prematurely terminated mRNAs via the mechanism of nonsense-mediated mRNA decay (NMD). Alternate splicing results in multiple transcript variants. Pseudogenes of this gene are found on chromosomes 6, 7, and X. [provided by RefSeq, Aug 2013]

GeneCards Summary for ETF1 Gene

ETF1 (Eukaryotic Translation Termination Factor 1) is a Protein Coding gene. Among its related pathways are Viral mRNA Translation and Metabolism of proteins. GO annotations related to this gene include poly(A) RNA binding and ribosome binding.

UniProtKB/Swiss-Prot for ETF1 Gene

  • Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Gene Wiki entry for ETF1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ETF1 Gene

Genomics for ETF1 Gene

Regulatory Elements for ETF1 Gene

Enhancers for ETF1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G139517 1.8 FANTOM5 Ensembl ENCODE 10.6 -974.9 -974876 1.9 CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 ZNF416 ZNF143 ZNF263 SP3 MEF2D PURA IGIP DNAJC18 SLC23A1 ETF1 LINC01024 PSD2 MATR3 UBE2D2 PIR33843
GH05G138212 1.1 ENCODE 13.9 +329.9 329934 1.6 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 ETF1 CDC23 GC05M138210
GH05G138463 1.8 FANTOM5 ENCODE dbSUPER 3.9 +78.1 78052 4.1 CREB3L1 AGO1 YY1 ZNF143 ZNF263 SP3 SSRP1 ZNF610 ZNF585B GLIS1 HNRNPA0 EGR1 CDC23 KDM3B FAM53C REEP2 LRRTM2 CDC25C ETF1 FAM13B
GH05G138503 1.3 Ensembl ENCODE dbSUPER 5.2 +38.7 38688 2.4 ARID4B GLI4 RAD21 ZEB1 ZNF143 MIXL1 DEK ZNF654 REST MAFF ETF1 REEP2 GC05P138492
GH05G138548 1 Ensembl ENCODE 5.1 -4.9 -4901 0.4 BCOR CTCF PKNOX1 SAP130 ARID4B RAD21 POLR2A ZNF143 SMC3 ZNF654 ETF1 GC05M138528 GC05M138545
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ETF1 on UCSC Golden Path with GeneCards custom track

Promoters for ETF1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000187502 0 3001 CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 ZNF610

Genomic Location for ETF1 Gene

Chromosome:
5
Start:
138,506,093 bp from pter
End:
138,543,300 bp from pter
Size:
37,208 bases
Orientation:
Minus strand

Genomic View for ETF1 Gene

Genes around ETF1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ETF1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ETF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ETF1 Gene

Proteins for ETF1 Gene

  • Protein details for ETF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P62495-ERF1_HUMAN
    Recommended name:
    Eukaryotic peptide chain release factor subunit 1
    Protein Accession:
    P62495
    Secondary Accessions:
    • B2R6B4
    • D3DQC1
    • P46055
    • Q5M7Z7
    • Q96CG1

    Protein attributes for ETF1 Gene

    Size:
    437 amino acids
    Molecular mass:
    49031 Da
    Quaternary structure:
    • Heterodimer of two subunits, one of which binds GTP. Component of the transient SURF (SMG1-UPF1-eRF1-eRF3) complex.

    Three dimensional structures from OCA and Proteopedia for ETF1 Gene

    Alternative splice isoforms for ETF1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ETF1 Gene

Post-translational modifications for ETF1 Gene

  • Ubiquitination at isoforms=2171, Lys384, and isoforms=2404
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for ETF1 Gene

Domains & Families for ETF1 Gene

Suggested Antigen Peptide Sequences for ETF1 Gene

Graphical View of Domain Structure for InterPro Entry

P62495

UniProtKB/Swiss-Prot:

ERF1_HUMAN :
  • Belongs to the eukaryotic release factor 1 family.
Family:
  • Belongs to the eukaryotic release factor 1 family.
genes like me logo Genes that share domains with ETF1: view

No data available for Gene Families for ETF1 Gene

Function for ETF1 Gene

Molecular function for ETF1 Gene

GENATLAS Biochemistry:
eukaryotic translation termination factor 1,associating with the catalytic subunit of protein phosphatase 2A
UniProtKB/Swiss-Prot Function:
Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. Component of the transient SURF complex which recruits UPF1 to stalled ribosomes in the context of nonsense-mediated decay (NMD) of mRNAs containing premature stop codons.

Gene Ontology (GO) - Molecular Function for ETF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS,IDA 22658674
GO:0003747 translation release factor activity TAS 15326224
GO:0005515 protein binding IPI 9620853
GO:0008079 translation termination factor activity TAS 10413110
GO:0016149 translation release factor activity, codon specific IEA --
genes like me logo Genes that share ontologies with ETF1: view
genes like me logo Genes that share phenotypes with ETF1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for ETF1
  • Applied Biological Materials Clones for ETF1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ETF1 Gene

Localization for ETF1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ETF1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ETF1 gene
Compartment Confidence
cytosol 5
peroxisome 2
nucleus 2

Gene Ontology (GO) - Cellular Components for ETF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 NOT nucleus IDA 12426392
GO:0005737 cytoplasm IDA,IEA 12426392
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with ETF1: view

Pathways & Interactions for ETF1 Gene

genes like me logo Genes that share pathways with ETF1: view

Pathways by source for ETF1 Gene

Gene Ontology (GO) - Biological Process for ETF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006412 translation IEA --
GO:0006415 translational termination IEA,TAS --
GO:0006449 regulation of translational termination TAS 7990965
GO:0006479 protein methylation IDA 18539146
genes like me logo Genes that share ontologies with ETF1: view

No data available for SIGNOR curated interactions for ETF1 Gene

Drugs & Compounds for ETF1 Gene

(5) Drugs for ETF1 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine triphosphate Experimental Pharma 0

(9) Additional Compounds for ETF1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with ETF1: view

Transcripts for ETF1 Gene

Unigene Clusters for ETF1 Gene

Eukaryotic translation termination factor 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for ETF1
  • Applied Biological Materials Clones for ETF1

Alternative Splicing Database (ASD) splice patterns (SP) for ETF1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13
SP1: - -
SP2:
SP3:
SP4: -
SP5:
SP6: - - - -
SP7:

Relevant External Links for ETF1 Gene

GeneLoc Exon Structure for
ETF1
ECgene alternative splicing isoforms for
ETF1

Expression for ETF1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ETF1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ETF1 Gene



Protein tissue co-expression partners for ETF1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ETF1 Gene:

ETF1

SOURCE GeneReport for Unigene cluster for ETF1 Gene:

Hs.483494

Evidence on tissue expression from TISSUES for ETF1 Gene

  • Nervous system(4.8)
  • Liver(4.5)
  • Blood(4.4)
genes like me logo Genes that share expression patterns with ETF1: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ETF1 Gene

Orthologs for ETF1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ETF1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ETF1 34 35
  • 100 (n)
oppossum
(Monodelphis domestica)
Mammalia ETF1 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ETF1 34 35 35
  • 96.64 (n)
cow
(Bos Taurus)
Mammalia ETF1 34 35
  • 96.57 (n)
rat
(Rattus norvegicus)
Mammalia Etf1 34
  • 95.04 (n)
mouse
(Mus musculus)
Mammalia Etf1 34 16 35
  • 94.97 (n)
chicken
(Gallus gallus)
Aves ETF1 34 35
  • 88.86 (n)
lizard
(Anolis carolinensis)
Reptilia ETF1 35
  • 100 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia etf1 34
  • 84.36 (n)
MGC75958 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.3333 34
zebrafish
(Danio rerio)
Actinopterygii etf1 34 34 35
  • 79.1 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010310 34
  • 71.25 (n)
fruit fly
(Drosophila melanogaster)
Insecta eRF1 36 34 35
  • 71.02 (n)
worm
(Caenorhabditis elegans)
Secernentea T05H4.6a 36
  • 80 (a)
T05H4.6b 36
  • 80 (a)
etf-1 34 35
  • 71.93 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C11231g 34
  • 67.06 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SUP45 34 35 37
  • 66.04 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER028C 34
  • 63.57 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons ERF1-1 34
  • 65.65 (n)
soybean
(Glycine max)
eudicotyledons Gma.18085 34
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.8098 34
rice
(Oryza sativa)
Liliopsida Os01g0939500 34
  • 66.74 (n)
Os.7009 34
barley
(Hordeum vulgare)
Liliopsida Hv.3060 34
wheat
(Triticum aestivum)
Liliopsida Ta.5741 34
corn
(Zea mays)
Liliopsida Zm.13318 34
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7901 35
  • 84 (a)
OneToOne
bread mold
(Neurospora crassa)
Ascomycetes NCU00410 34
  • 66.12 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes sup45 34
  • 61.97 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.4884 34
Species where no ortholog for ETF1 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for ETF1 Gene

ENSEMBL:
Gene Tree for ETF1 (if available)
TreeFam:
Gene Tree for ETF1 (if available)

Paralogs for ETF1 Gene

No data available for Paralogs for ETF1 Gene

Variants for ETF1 Gene

Sequence variations from dbSNP and Humsavar for ETF1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000035316 -- 138,523,937(+) TCTGG(A/G)AGGCC intron-variant
rs1000040215 -- 138,522,909(+) GCTGA(A/G)TCAGG intron-variant
rs1000327808 -- 138,540,839(+) GAGGC(A/G)CTTAA intron-variant
rs1000333879 -- 138,533,863(+) GAAGT(A/G)TCATT intron-variant
rs1000506638 -- 138,544,757(+) TAGCC(C/T)GGTGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ETF1 Gene

Variant ID Type Subtype PubMed ID
esv2669716 CNV deletion 23128226
esv2677157 CNV deletion 23128226
esv3566702 CNV deletion 23714750
nsv329728 CNV deletion 16902084
nsv968990 CNV duplication 23825009

Variation tolerance for ETF1 Gene

Residual Variation Intolerance Score: 24.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.05; 1.18% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ETF1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ETF1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ETF1 Gene

Disorders for ETF1 Gene

Relevant External Links for ETF1

Genetic Association Database (GAD)
ETF1
Human Genome Epidemiology (HuGE) Navigator
ETF1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ETF1

No disorders were found for ETF1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ETF1 Gene

Publications for ETF1 Gene

  1. A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor. (PMID: 7990965) Frolova L. … Kisselev L. (Nature 1994) 2 3 4 22 64
  2. Human release factor eRF1: structural organisation of the unique functional gene on chromosome 5 and of the three processed pseudogenes. (PMID: 10413110) Guenet L. … Le Treut A. (FEBS Lett. 1999) 3 4 22 64
  3. The catalytic subunit of protein phosphatase 2A associates with the translation termination factor eRF1. (PMID: 9003791) Andjelkovic N. … Hemmings B.A. (EMBO J. 1996) 3 4 22 64
  4. SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay. (PMID: 19417104) Yamashita A. … Ohno S. (Genes Dev. 2009) 4 22 64
  5. Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways. (PMID: 18256688) Ivanov P.V. … Kulozik A.E. (EMBO J. 2008) 3 22 64

Products for ETF1 Gene

  • Addgene plasmids for ETF1

Sources for ETF1 Gene

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