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Aliases for ESRP2 Gene

Aliases for ESRP2 Gene

  • Epithelial Splicing Regulatory Protein 2 2 3 5
  • RNA-Binding Motif Protein 35B 3 4
  • RNA-Binding Protein 35B 3 4
  • RBM35B 3 4
  • RNA Binding Motif Protein 35A 3
  • RNA Binding Motif Protein 35B 2

External Ids for ESRP2 Gene

Previous HGNC Symbols for ESRP2 Gene

  • RBM35B

Previous GeneCards Identifiers for ESRP2 Gene

  • GC16M066821
  • GC16M068259
  • GC16M054135
  • GC16M068263

Summaries for ESRP2 Gene

Entrez Gene Summary for ESRP2 Gene

  • ESPR2 is an epithelial cell-type-specific splicing regulator (Warzecha et al., 2009 [PubMed 19285943]).[supplied by OMIM, Aug 2009]

GeneCards Summary for ESRP2 Gene

ESRP2 (Epithelial Splicing Regulatory Protein 2) is a Protein Coding gene. Among its related pathways are mRNA Capping and Signaling by GPCR. GO annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is ESRP1.

UniProtKB/Swiss-Prot for ESRP2 Gene

  • mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of FGFR2. Also regulates the splicing of CD44, CTNND1, ENAH, 3 transcripts that undergo changes in splicing during the epithelial-to-mesenchymal transition (EMT). Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of FGFR2.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ESRP2 Gene

Genomics for ESRP2 Gene

Regulatory Elements for ESRP2 Gene

Enhancers for ESRP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F068210 0.6 ENCODE 11.9 +26.8 26794 1.7 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 FOS KLF13 PRMT7 DUS2 MIR6773 ESRP2 PLA2G15 SLC7A6 NFATC3 SLC7A6OS EDC4 DPEP2
GH16F068201 0.5 ENCODE 11.4 +36.1 36148 1.4 MLX ARID4B SIN3A FEZF1 ZNF2 ZNF48 YY1 ZNF121 GLIS2 SP3 MIR6773 ESRP2 PLA2G15 SLC7A6 PRMT7 SLC7A6OS ENSG00000279621 RPS12P27
GH16F068951 0.2 ENCODE 3.7 -714.3 -714309 1.3 PKNOX1 ATF1 FOSL1 ZNF316 FOS NFE2L2 SMARCA5 L3MBTL2 BHLHE40 NR4A1 SNTB2 ENSG00000200164 RNU4-36P ENSG00000252443 WWP2 CDH1 ESRP2 ENSG00000260999 GC16M069007
GH16F068233 1 FANTOM5 ENCODE 2 +2.2 2227 5.2 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ACD DUS2 PRMT7 SLC7A6OS ENSG00000259797 SLC12A4 ESRP2 TSNAXIP1 ENSG00000261469 ENSG00000262160
GH16F068663 0.7 FANTOM5 ENCODE 1.9 -428.6 -428560 6.7 RNF2 JUNB MAFG ZNF316 MAFF GATA3 EED ETV6 PRDM10 MAFK ZFP90 CDH3 ENSG00000252040 ENSG00000252640 CDH1 ESRP2 LOC100418868 HSPE1P5
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ESRP2 on UCSC Golden Path with GeneCards custom track

Promoters for ESRP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000509121 1402 3401 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1

Genomic Location for ESRP2 Gene

Chromosome:
16
Start:
68,228,547 bp from pter
End:
68,238,102 bp from pter
Size:
9,556 bases
Orientation:
Minus strand

Genomic View for ESRP2 Gene

Genes around ESRP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ESRP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ESRP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ESRP2 Gene

Proteins for ESRP2 Gene

  • Protein details for ESRP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H6T0-ESRP2_HUMAN
    Recommended name:
    Epithelial splicing regulatory protein 2
    Protein Accession:
    Q9H6T0
    Secondary Accessions:
    • Q8N6H8
    • Q8WZ15
    • Q9H6I4

    Protein attributes for ESRP2 Gene

    Size:
    727 amino acids
    Molecular mass:
    78401 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAL55761.1; Type=Frameshift; Positions=370; Evidence={ECO:0000305}; Sequence=BAB15275.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for ESRP2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ESRP2 Gene

Post-translational modifications for ESRP2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ESRP2 Gene

Domains & Families for ESRP2 Gene

Gene Families for ESRP2 Gene

Suggested Antigen Peptide Sequences for ESRP2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H6T0

UniProtKB/Swiss-Prot:

ESRP2_HUMAN :
  • Contains 3 RRM (RNA recognition motif) domains.
  • Belongs to the ESRP family.
Domain:
  • Contains 3 RRM (RNA recognition motif) domains.
Family:
  • Belongs to the ESRP family.
genes like me logo Genes that share domains with ESRP2: view

Function for ESRP2 Gene

Molecular function for ESRP2 Gene

UniProtKB/Swiss-Prot Function:
mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of FGFR2. Also regulates the splicing of CD44, CTNND1, ENAH, 3 transcripts that undergo changes in splicing during the epithelial-to-mesenchymal transition (EMT). Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of FGFR2.
UniProtKB/Swiss-Prot Induction:
Down-regulated during the epithelial-to-mesenchymal transition (EMT).

Gene Ontology (GO) - Molecular Function for ESRP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding IEA --
GO:0003723 RNA binding IEA --
GO:0003729 mRNA binding IDA 19285943
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with ESRP2: view
genes like me logo Genes that share phenotypes with ESRP2: view

Animal Models for ESRP2 Gene

MGI Knock Outs for ESRP2:

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ESRP2 Gene

Localization for ESRP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ESRP2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ESRP2 Gene COMPARTMENTS Subcellular localization image for ESRP2 gene
Compartment Confidence
nucleus 5
cytosol 2
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for ESRP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,IDA 19285943
GO:0005654 nucleoplasm TAS --
genes like me logo Genes that share ontologies with ESRP2: view

Pathways & Interactions for ESRP2 Gene

genes like me logo Genes that share pathways with ESRP2: view

Pathways by source for ESRP2 Gene

Gene Ontology (GO) - Biological Process for ESRP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000380 alternative mRNA splicing, via spliceosome IEA --
GO:0006397 mRNA processing IEA --
GO:0008380 RNA splicing IEA --
GO:0008543 fibroblast growth factor receptor signaling pathway TAS --
GO:0043484 regulation of RNA splicing IDA 19285943
genes like me logo Genes that share ontologies with ESRP2: view

No data available for SIGNOR curated interactions for ESRP2 Gene

Transcripts for ESRP2 Gene

Unigene Clusters for ESRP2 Gene

Epithelial splicing regulatory protein 2:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ESRP2 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b
SP1: - - - - -
SP2: - - - - - -
SP3: - - - -
SP4: - - -
SP5: - - -
SP6: - - -
SP7: -
SP8:

Relevant External Links for ESRP2 Gene

GeneLoc Exon Structure for
ESRP2
ECgene alternative splicing isoforms for
ESRP2

Expression for ESRP2 Gene

mRNA expression in normal human tissues for ESRP2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ESRP2 Gene

This gene is overexpressed in Esophagus - Mucosa (x8.8) and Liver (x5.4).

Protein differential expression in normal tissues from HIPED for ESRP2 Gene

This gene is overexpressed in Esophagus (23.4), Pancreas (22.3), and Placenta (15.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ESRP2 Gene



Protein tissue co-expression partners for ESRP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of ESRP2 Gene:

ESRP2

SOURCE GeneReport for Unigene cluster for ESRP2 Gene:

Hs.592053

mRNA Expression by UniProt/SwissProt for ESRP2 Gene:

Q9H6T0-ESRP2_HUMAN
Tissue specificity: Epithelial cell-specific.
genes like me logo Genes that share expression patterns with ESRP2: view

Primer Products

Orthologs for ESRP2 Gene

This gene was present in the common ancestor of animals.

Orthologs for ESRP2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ESRP2 34 35
  • 99.4 (n)
dog
(Canis familiaris)
Mammalia ESRP2 34 35
  • 91.07 (n)
cow
(Bos Taurus)
Mammalia ESRP2 34 35
  • 90.82 (n)
mouse
(Mus musculus)
Mammalia Esrp2 34 16 35
  • 88.28 (n)
rat
(Rattus norvegicus)
Mammalia Esrp2 34
  • 87.87 (n)
oppossum
(Monodelphis domestica)
Mammalia ESRP2 35
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ESRP2 35
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves ESRP2 34 35
  • 66.28 (n)
lizard
(Anolis carolinensis)
Reptilia ESRP2 35
  • 66 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii esrp2 34 35
  • 65.05 (n)
sbcb404 34
fruit fly
(Drosophila melanogaster)
Insecta fus 34 35
  • 53.03 (n)
worm
(Caenorhabditis elegans)
Secernentea sym-2 34 35
  • 48.52 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10873 35
  • 45 (a)
OneToMany
Species where no ortholog for ESRP2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ESRP2 Gene

ENSEMBL:
Gene Tree for ESRP2 (if available)
TreeFam:
Gene Tree for ESRP2 (if available)

Paralogs for ESRP2 Gene

Paralogs for ESRP2 Gene

(1) SIMAP similar genes for ESRP2 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with ESRP2: view

Variants for ESRP2 Gene

Sequence variations from dbSNP and Humsavar for ESRP2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10600483 -- 68,233,585(+) GACAT(-/AGAC)AGACA intron-variant, upstream-variant-2KB
rs1077737 -- 68,232,548(-) CCCAA(C/T)TGGAC intron-variant
rs11043 -- 68,229,055(-) TAAAA(C/T)ACAAG downstream-variant-500B, utr-variant-3-prime
rs111474181 -- 68,231,386(+) GCACA(C/G/T)CATCT intron-variant
rs111711848 -- 68,233,608(+) ATTCC(A/G)AACTC intron-variant, upstream-variant-2KB

Variation tolerance for ESRP2 Gene

Residual Variation Intolerance Score: 13.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.62; 56.59% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ESRP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ESRP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ESRP2 Gene

Disorders for ESRP2 Gene

Relevant External Links for ESRP2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ESRP2

No disorders were found for ESRP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ESRP2 Gene

Publications for ESRP2 Gene

  1. ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing. (PMID: 19285943) Warzecha C.C. … Carstens R.P. (Mol. Cell 2009) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Large-scale cDNA transfection screening for genes related to cancer development and progression. (PMID: 15498874) Wan D. … Gu J. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for ESRP2 Gene

Sources for ESRP2 Gene

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