Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ESRG Gene

Subcategory (RNA class) for ESRG Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ESRG Gene

  • Embryonic Stem Cell Related (Non-Protein Coding) 2 3 5
  • HESRG 3 4
  • Human Embryonic Stem Cell Related Gene 2
  • Embryonic Stem Cell Related Protein 3
  • Human Embryonic Stem Cell Related 3
  • HES Cell-Related Gene Protein 4

External Ids for ESRG Gene

Previous GeneCards Identifiers for ESRG Gene

  • GC03M054714

Summaries for ESRG Gene

GeneCards Summary for ESRG Gene

ESRG (Embryonic Stem Cell Related (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ESRG Gene

Genomics for ESRG Gene

Regulatory Elements for ESRG Gene

Enhancers for ESRG Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F054629 0.4 ENCODE 22.7 +9.7 9720 2.2 POLR2A SCRT2 POU5F1 FOS ESRG GC03P054626
GH03F054755 0.7 ENCODE 22.4 -116.4 -116425 2.3 FOS ESRG GC03M054667 GC03M054844
GH03F054640 0.2 ENCODE 10.8 -2.0 -1963 3.4 GATA3 POU5F1 ESRG GC03P054663
GH03F054691 0.6 FANTOM5 10.5 -51.3 -51291 0.1 ESRG GC03P054663 GC03M054667
GH03F054628 0.3 FANTOM5 8.7 +11.1 11133 0.3 POLR2A SCRT2 ESRG GC03P054626
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ESRG on UCSC Golden Path with GeneCards custom track

Genomic Location for ESRG Gene

Chromosome:
3
Start:
54,632,122 bp from pter
End:
54,639,857 bp from pter
Size:
7,736 bases
Orientation:
Minus strand

Genomic View for ESRG Gene

Genes around ESRG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ESRG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ESRG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ESRG Gene

Proteins for ESRG Gene

  • Protein details for ESRG Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q1W209-ESRG_HUMAN
    Recommended name:
    Embryonic stem cell-related gene protein
    Protein Accession:
    Q1W209

    Protein attributes for ESRG Gene

    Size:
    222 amino acids
    Molecular mass:
    24186 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=ABD92927.1; Type=Erroneous translation; Note=Wrong choice of frame.; Evidence={ECO:0000305};

neXtProt entry for ESRG Gene

Post-translational modifications for ESRG Gene

No Post-translational modifications

No data available for DME Specific Peptides for ESRG Gene

Domains & Families for ESRG Gene

Gene Families for ESRG Gene

Protein Domains for ESRG Gene

ProtoNet:

Suggested Antigen Peptide Sequences for ESRG Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ESRG: view

No data available for UniProtKB/Swiss-Prot for ESRG Gene

Function for ESRG Gene

Molecular function for ESRG Gene

UniProtKB/Swiss-Prot Induction:
Down-regulated during differentiation of ES cells.

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ESRG Gene

Localization for ESRG Gene

Subcellular locations from UniProtKB/Swiss-Prot for ESRG Gene

Gene Ontology (GO) - Cellular Components for ESRG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 23628413
genes like me logo Genes that share ontologies with ESRG: view

No data available for Subcellular locations from COMPARTMENTS for ESRG Gene

Pathways & Interactions for ESRG Gene

SuperPathways for ESRG Gene

No Data Available

Interacting Proteins for ESRG Gene

Gene Ontology (GO) - Biological Process for ESRG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ESRG Gene

Transcripts for ESRG Gene

mRNA/cDNA for ESRG Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ESRG Gene

Embryonic stem cell related (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ESRG Gene

No ASD Table

Relevant External Links for ESRG Gene

GeneLoc Exon Structure for
ESRG
ECgene alternative splicing isoforms for
ESRG

Expression for ESRG Gene

mRNA expression in normal human tissues for ESRG Gene

mRNA differential expression in normal tissues according to GTEx for ESRG Gene

This gene is overexpressed in Cervix - Ectocervix (x21.7) and Vagina (x15.1).

NURSA nuclear receptor signaling pathways regulating expression of ESRG Gene:

ESRG

SOURCE GeneReport for Unigene cluster for ESRG Gene:

Hs.720658

mRNA Expression by UniProt/SwissProt for ESRG Gene:

Q1W209-ESRG_HUMAN
Tissue specificity: Expressed only in fetal ovary and in undifferentiated ES cells.
genes like me logo Genes that share expression patterns with ESRG: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for ESRG Gene

Orthologs for ESRG Gene

Evolution for ESRG Gene

ENSEMBL:
Gene Tree for ESRG (if available)
TreeFam:
Gene Tree for ESRG (if available)

No data available for Orthologs for ESRG Gene

Paralogs for ESRG Gene

No data available for Paralogs for ESRG Gene

Variants for ESRG Gene

Sequence variations from dbSNP and Humsavar for ESRG Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10576219 -- 54,632,723(+) AAAGA(-/TT)TTGAG intron-variant, nc-transcript-variant
rs1097771 -- 54,635,811(-) atgag(C/T)cttta intron-variant
rs112999755 -- 54,633,211(+) ATTTG(C/T)TTACT intron-variant
rs1130197 -- 54,632,482(-) TTCTG(G/T)GGAGA intron-variant, nc-transcript-variant
rs113244898 -- 54,637,900(+) GGCTG(C/T)GGGCG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ESRG Gene

Variant ID Type Subtype PubMed ID
esv3596185 CNV loss 21293372
nsv1014595 CNV loss 25217958
nsv517851 CNV gain 19592680
nsv525644 CNV gain 19592680
nsv834700 CNV gain 17160897

Relevant External Links for ESRG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ESRG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ESRG Gene

Disorders for ESRG Gene

Relevant External Links for ESRG

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ESRG

No disorders were found for ESRG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ESRG Gene

Publications for ESRG Gene

  1. Transcriptional profiling of human embryonic stem cells and embryoid bodies identifies HESRG, a novel stem cell gene. (PMID: 17803967) Zhao M. … Yao K. (Biochem. Biophys. Res. Commun. 2007) 2 3 4 64
  2. Identification, expression and subcellular localization of ESRG. (PMID: 23628413) Li G. … Jiang X. (Biochem. Biophys. Res. Commun. 2013) 3 4 64
  3. HESRG: a novel biomarker for intracranial germinoma and embryonal carcinoma. (PMID: 21861197) Wanggou S. … Ren C. (J. Neurooncol. 2012) 2 3 64
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4 64

Products for ESRG Gene

Sources for ESRG Gene

Content
Loading form....