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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ERI1 Gene

protein-coding   GIFtS: 50
GCID: GC08P008900

exoribonuclease 1

(Previous name: three prime histone mRNA exonuclease 1 )
(Previous symbol: THEX1)
 Explore 1 disease affiliated with
ERI1 via our new
 Human Malady Compendium 
Biological research products
for ERI1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Exoribonuclease 11 2     Eri-1 Homolog2 3
THEX11 2 3     3' Exoribonuclease2
3'HEXO1 2     3'-5' Exoribonuclease 12
Three Prime Histone MRNA Exonuclease 11 2     Enhanced RNAi Three Prime MRNA Exonuclease Homolog 12
Histone MRNA 3'-End-Specific Exoribonuclease2 3     Histone MRNA 3' End-Specific Exonuclease2
Histone MRNA 3'-Exonuclease 12 3     Three Prime MRNA Exonuclease 12
Protein 3'HExo2 3     3'EXO3
3'-5' Exonuclease ERI12 3     EC 3.1.-.-3
HEXO2 3     

External Ids:    HGNC: 239941   Entrez Gene: 904592   Ensembl: ENSG000001046267   OMIM: 6087395   UniProtKB: Q8IV483   

Export aliases for ERI1 gene to outside databases

Previous GC identifer: GC08P007785


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ERI1_HUMAN, Q8IV48
Function: RNA exonuclease that binds to the 3'-end of histone mRNAs and degrades them, suggesting that it plays an
essential role in histone mRNA decay after replication. A 2' and 3'-hydroxyl groups at the last nucleotide of the
histone 3'-end is required for efficient degradation of RNA substrates. Also able to degrade the 3'-overhangs of short
interfering RNAs (siRNAs) in vitro, suggesting a possible role as regulator of RNA interference (RNAi). Requires for
binding the 5'-ACCCA-3' sequence present in stem-loop structure. Able to bind other mRNAs. Required for 5.8S rRNA
3'-end processing. Also binds to 5.8s ribosomal RNA. Binds with high affinity to the stem-loop structure of
replication-dependent histone pre-mRNAs




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.1  NT_077531.4  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ERI1 gene promoter:
         ATF-2   Pax-2   POU6F1 (c2)   Pax-2a   HNF-3beta   c-Ets-1   CRE-BP1   RORalpha1   Pax-2b   Ik-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidERI1 promoter sequence
   Search SABiosciences Chromatin IP Primers for ERI1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ERI1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8p23.1   Ensembl cytogenetic band:  8p23.1   HGNC cytogenetic band: 8p23.1

ERI1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ERI1 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08P008900:  view genomic region     (about GC identifiers)

Start:
8,859,657 bp from pter      End:
8,974,256 bp from pter
Size:
114,600 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ERI1_HUMAN, Q8IV48 (See protein sequence)
Recommended Name: 3'-5' exoribonuclease 1  
Size: 349 amino acids; 40064 Da
Cofactor: Binds 2 magnesium ions per subunit
Subunit: Identified in a histone pre-mRNA complex, at least composed of ERI1, LSM11, SLBP, SNRPB, SYNCRIP and YBX1.
Interacts in a cooperative manner with SLBP to the mature 3'-end of histone mRNAs (By similarity). Binds to 40S and
60S ribosomal subunits and to 80S assembled ribosomes. Found in a ternary complex with SLBP and the stem-loop
structure of the 3'-end of histone mRNAs
Subcellular location: Cytoplasm. Nucleus. Nucleus, nucleolus
Sequence caution: Sequence=CAB70871.2; Type=Erroneous termination; Positions=159; Note=Translated as Leu;
Sequence=CAB70871.2; Type=Frameshift; Positions=117;
4 PDB 3D structures from and Proteopedia for ERI1:
1W0H (3D)        1ZBH (3D)        1ZBU (3D)        4HXH (3D)    
Secondary accessions: A8K4U7 Q9NSX3

Explore the universe of human proteins at neXtProt for ERI1: NX_Q8IV48

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8IV48

  • ERI1 Protein expression data from MOPED and PaxDb:    About this image 
    ERI1 Protein Expression
    REFSEQ proteins: NP_699163.2  
    ENSEMBL proteins: 
     ENSP00000429615   ENSP00000430190   ENSP00000429043   ENSP00000430651   ENSP00000250263  

    Human Recombinant Protein Products for ERI1: 
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    OriGene Protein Over-expression Lysate: ERI1
    OriGene Custom Protein Services for ERI1 
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    Novus Biologicals ERI1 Protein
    Novus Biologicals ERI1 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for ERI1

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus ISS--
    GO:0005730nucleolus ISS--
    GO:0005737cytoplasm ISS--
    GO:0071204histone pre-mRNA 3'end processing complex ISS--

    ERI1 for ontologies           About GeneDecksing



    ERI1 Antibody Products: 
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    OriGene Custom Antibody Services for ERI1 
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    Novus Biologicals ERI1 Antibodies
    Abcam antibodies for ERI1 
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    ThermoFisher Antibodies for ERI1

    Assay Products for ERI1: 
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    Uscn ELISAs and CLIAs for ERI1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ERI1 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR013520 Exonuclease_RNaseT/DNA_pol3
     IPR006055 Exonuclease
     IPR003034 SAP_dom
     IPR012337 RNaseH-like_dom

    Graphical View of Domain Structure for InterPro Entry Q8IV48

    ProtoNet protein and cluster: Q8IV48

    2 Blocks protein families:
    IPB003034 DNA-binding SAP
    IPB006055 Exonuclease


    UniProtKB/Swiss-Prot: ERI1_HUMAN, Q8IV48
    Domain: The SAP domain is necessary for binding to the stem-loop structure of histone mRNAs and to form the ternary
    complex with SLBP, but not for 3'-end histone mRNA exonuclease activity
    Similarity: Contains 1 exonuclease domain
    Similarity: Contains 1 SAP domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ERI1_HUMAN, Q8IV48
    Function: RNA exonuclease that binds to the 3'-end of histone mRNAs and degrades them, suggesting that it plays an
    essential role in histone mRNA decay after replication. A 2' and 3'-hydroxyl groups at the last nucleotide of the
    histone 3'-end is required for efficient degradation of RNA substrates. Also able to degrade the 3'-overhangs of short
    interfering RNAs (siRNAs) in vitro, suggesting a possible role as regulator of RNA interference (RNAi). Requires for
    binding the 5'-ACCCA-3' sequence present in stem-loop structure. Able to bind other mRNAs. Required for 5.8S rRNA
    3'-end processing. Also binds to 5.8s ribosomal RNA. Binds with high affinity to the stem-loop structure of
    replication-dependent histone pre-mRNAs
    Enzyme regulation: Although it can bind simultaneously with SLBP to the 3'-end of histone mRNA, the presence of SLBP
    prevents the exonuclease activity

         Enzyme Number (IUBMB): EC 3.1.-.-1

         Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:00084083'-5' exonuclease activity IDA16912046
    GO:0019843rRNA binding ISS--
    GO:0043022ribosome binding ISS--
    GO:0046872metal ion binding IEA--
    GO:0071207histone pre-mRNA stem-loop binding ISS--
         
    ERI1 for ontologies           About GeneDecksing


    Phenotypes:
         4 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Eri1):
     cellular  growth/size  mortality/aging  no phenotypic analysis 

    ERI1 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Eri1tm1.2Anse for ERI1
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for ERI1 

    miRNA
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    OriGene 3'-UTR Clone: ERI1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ERI1
    8/58 QIAGEN miScript miRNA Assays for microRNAs that regulate ERI1 (see all 58):
    hsa-miR-219-1-3p hsa-miR-302d hsa-miR-520e hsa-miR-640 hsa-miR-19b-2* hsa-miR-429 hsa-miR-106a hsa-miR-138-2*
    SwitchGear 3'UTR luciferase reporter plasmidERI1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ERI1 (see all 4)
    OriGene shRNA RFP: ERI1
    Browse OriGene siRNA
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ERI1
    Sirion Biotech Custom design and validation of potent shRNA sequences against ERI1 

    Gene Editing
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    DNA2.0 Custom Protein Engineering Service for ERI1
    Sirion Biotech Customized adenovirus for overexpression of ERI1 
    Sirion Biotech Customized adenovirus for potent knockdown of ERI1

    Clone
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    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ERI1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ERI1 (see all 2)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: ERI1 (NM_153332)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ERI1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ERI1 

    Cell Line
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    Search LifeMap BioReagents cell lines for ERI1
    Sirion Biotech Customized stable knockdown cell line services for ERI1 
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    Sirion Biotech Customized stable overexpressing cell line services for ERI1
    Sirion Biotech Customized inducible overexpressing cell line services for ERI1

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ERI1


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Chromatin Regulation / Acetylation
    Chromatin Regulation / Acetylation1.00
    2Translational Control
    Translational Control1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    2 Cell Signaling Technology (CST) Pathways for ERI1
        Chromatin Regulation / Acetylation
    Translational Control



    ERI1 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ERI1

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for ERI1 (Q8IV483 ENSP000002502634) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SLBPQ144933, ENSP000004176864I2D: score=1 STRING: ENSP00000417686
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0031047gene silencing by RNA IEA--
    GO:0031125rRNA 3'-end processing ISS--
    GO:0071044NOT histone mRNA catabolic process IMP18172165

    ERI1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ERI1

    1 HMDB Compound for ERI1    About this table
    CompoundSynonyms CAS #PubMed Ids
    MagnesiumMagnesium (see all 2)7439-95-4--
    Search CenterWatch for drugs/clinical trials and news about ERI1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ERI1 gene: 
    NM_153332.3  

    Unigene Cluster for ERI1:

    Exoribonuclease 1
    Hs.20000  [show with all ESTs]
    Unigene Representative Sequence: NM_153332
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000523898 ENST00000519292 ENST00000521844 ENST00000520684 ENST00000520332
    ENST00000518663 ENST00000522612 ENST00000522258 ENST00000250263(uc003wsk.2)


    miRNA
    Products:
         
    OriGene 3'-UTR Clone: ERI1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ERI1
    8/58 QIAGEN miScript miRNA Assays for microRNAs that regulate ERI1 (see all 58):
    hsa-miR-219-1-3p hsa-miR-302d hsa-miR-520e hsa-miR-640 hsa-miR-19b-2* hsa-miR-429 hsa-miR-106a hsa-miR-138-2*
    SwitchGear 3'UTR luciferase reporter plasmidERI1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ERI1 (see all 4)
    OriGene shRNA RFP: ERI1
    Browse OriGene siRNA
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ERI1
    Sirion Biotech Custom design and validation of potent shRNA sequences against ERI1 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ERI1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ERI1 (see all 2)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: ERI1 (NM_153332)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ERI1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ERI1 
    Primer
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    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ERI1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ERI1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ERI1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ERI1

    Additional cDNA sequence: 

    AK024646.1 AK226180.1 AK291062.1 AK301506.1 AL137679.1 AY310909.1 BC035279.1 

    11 DOTS entries:

    DT.214460  DT.101957634  DT.100788000  DT.100034162  DT.121471129  DT.86835774  DT.86839753  DT.95369395 
    DT.102826518  DT.425684  DT.70101834 

    24/154 AceView cDNA sequences (see all 154):

    AY310909 CB106489 CA425553 AL603275 BC035279 BM148154 BG198861 AI290582 
    CR593780 NM_153332 AI733576 AW193640 BX475163 BG209306 BX955782 BI764357 
    CD107156 BU620343 CF994236 AA535614 AI784638 AA588412 BX955796 BG283229 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for ERI1    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
    SP1:              -                 -                                 
    SP2:              -                                                   
    SP3:                                                                  


    ECgene alternative splicing isoforms for ERI1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ERI1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CTTTGAAATA
    ERI1 Expression
    About this image
    See ERI1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ERI1

    SOURCE GeneReport for Unigene cluster: Hs.20000
        SABiosciences Custom PCR Arrays for ERI1

    Primer
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    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ERI1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ERI1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ERI1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ERI1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ERI1 gene from 7/23 species (see all 23)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Eri11 , 5 exoribonuclease 11, 5 82.42(n)1
    84.06(a)1
      8 (21.16 cM)5
    672761  NM_026067.31  NP_080343.41 
     354652655 
    chicken
    (Gallus gallus)
    Aves ERI11 exoribonuclease 1 73.06(n)
    77.36(a)
      422629  NM_001006450.1  NP_001006450.1 
    lizard
    (Anolis carolinensis)
    Reptilia ERI16
    --
    72(a)
    1 ↔ 1
    GL343257.1(1169336-1176212)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.80182 Xenopus laevis transcribed sequence with moderate similarity more 77.83(n)    BX851631.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.151062 Transcribed sequence with moderate similarity to protein more 72.68(n)    AL924198.1 
    worm
    (Caenorhabditis elegans)
    Secernentea eri-11 Protein ERI-1 49.12(n)
    39.59(a)
      176868  NM_171244.3  NP_741292.1 
    soybean
    (Glycine max)
    eudicotyledons CA851096.12   -- 88.75(n)    CA851096.1 


    ENSEMBL Gene Tree for ERI1 (if available)
    TreeFam Gene Tree for ERI1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ERI1 gene
    ERI22  ERI32  

    ERI1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1061 NCBI SNPs in ERI1 are shown (see all 1061    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs105841851,2
    C--7794617(+) AAAAT-/AAAG  
            
    AAAAC
    1 -- int10--------
    rs1817011521,2
    --8858326(+) GCATAC/TTCATA 1 -- us2k10--------
    rs1867745981,2
    --8858375(+) TTTATC/TATTTT 1 -- us2k10--------
    rs1158808731,2
    F--8858464(+) CCCTGT/CCACCC 1 -- us2k11Minor allele frequency- C:0.03WA 118
    rs1126671261,2
    --8858645(+) AGAGAG/CTTTTA 1 -- us2k11Minor allele frequency- C:0.50CSA 2
    rs1420761991,2
    --8858688(+) CAGAGC/TAGTTT 1 -- us2k10--------
    rs29792651,2
    C,F,A,H--8858717(-) AAAGCC/GTTAAA 1 -- us2k116Minor allele frequency- G:0.48NS EA NA WA 992
    rs745288001,2
    C,F--8858766(+) TCTACG/AGTTAT 1 -- us2k11Minor allele frequency- A:0.03WA 118
    rs1156484131,2
    C,F--8858777(+) TATATC/GTCACT 1 -- us2k11Minor allele frequency- G:0.02WA 118
    rs1900912661,2
    --8858785(+) ACTAAC/G/TGCATG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ERI1 (8859657 - 8974256 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 16 variations for ERI1
         15/16 Inversions (see all 16): 37318 37316 37307 37317 37311 37319 37320 37315 37312 37321 37304 37313 37314 37305 37306

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ERI1 for disorders           About GeneDecksing

    OMIM gene information: 608739    OMIM disorders: --

    1 disease for ERI1:    About MalaCards
    neuronitis

    Human Genome Epidemiology (HuGE) Navigator: ERI1 (1 document)

    Export disorders for ERI1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ERI1 gene, integrated from 9 sources (see all 21):
    (articles sorted by number of sources associating them with ERI1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A 3' exonuclease that specifically interacts with the 3' end of histone mRNA. (PubMed id 14536070)1, 2, 3 Dominski Z.... Marzluff W.F. (2003)
    2. Characterization of 3'hExo, a 3' exonuclease specifically interacting with the 3' end of histone mRNA. (PubMed id 16912046)1, 2, 9 Yang X.-C.... Dominski Z. (2006)
    3. Crystallographic structure of the nuclease domain of 3'hExo, a DEDDh family member, bound to rAMP. (PubMed id 15451662)1, 2, 9 Cheng Y. and Patel D.J. (2004)
    4. A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans. (PubMed id 14961122)1, 2 Kennedy S.... Ruvkun G. (2004)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. Structure of histone mRNA stem-loop, human stem-loop b inding protein, and 3'hExo ternary complex. (PubMed id 23329046)1 Tan D....Tong L. (2013)
    7. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    8. A protein array screen for Kaposi's sarcoma-associated herpesvirus LANA interactors links LANA to TIP60, PP2A activity, and telomere s hortening. (PubMed id 22379092)1 Shamay M....Hayward S.D. (2012)
    9. A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (2012)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
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    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 90459 HGNC: 23994 AceView: 3'HEXO Ensembl:ENSG00000104626 euGenes: HUgn90459
    ECgene: ERI1 H-InvDB: ERI1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ERI1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ERI1 gene:
    Search GeneIP for patents involving ERI1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 13 May 2013

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