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Aliases for ERCC1 Gene

Aliases for ERCC1 Gene

  • Excision Repair Cross-Complementation Group 1 2 3
  • Excision Repair Cross-Complementing Rodent Repair Deficiency, Complementation Group 1 (Includes Overlapping Antisense Sequence) 2 3
  • COFS4 3 6
  • UV20 3 6
  • DNA Excision Repair Protein ERCC-1 3
  • RAD10 3

External Ids for ERCC1 Gene

Previous GeneCards Identifiers for ERCC1 Gene

  • GC19M046556
  • GC19M046303
  • GC19M050586
  • GC19M050604
  • GC19M050602
  • GC19M045912
  • GC19M042340

Summaries for ERCC1 Gene

Entrez Gene Summary for ERCC1 Gene

  • The product of this gene functions in the nucleotide excision repair pathway, and is required for the repair of DNA lesions such as those induced by UV light or formed by electrophilic compounds including cisplatin. The encoded protein forms a heterodimer with the XPF endonuclease (also known as ERCC4), and the heterodimeric endonuclease catalyzes the 5' incision in the process of excising the DNA lesion. The heterodimeric endonuclease is also involved in recombinational DNA repair and in the repair of inter-strand crosslinks. Mutations in this gene result in cerebrooculofacioskeletal syndrome, and polymorphisms that alter expression of this gene may play a role in carcinogenesis. Multiple transcript variants encoding different isoforms have been found for this gene. The last exon of this gene overlaps with the CD3e molecule, epsilon associated protein gene on the opposite strand. [provided by RefSeq, Oct 2009]

GeneCards Summary for ERCC1 Gene

ERCC1 (Excision Repair Cross-Complementation Group 1) is a Protein Coding gene. Diseases associated with ERCC1 include cerebrooculofacioskeletal syndrome 4 and ercc1-related xeroderma pigmentosum. Among its related pathways are Cell Cycle / Checkpoint Control and Chks in Checkpoint Regulation. GO annotations related to this gene include protein C-terminus binding and single-stranded DNA binding.

UniProtKB/Swiss-Prot for ERCC1 Gene

  • Isoform 1: Non-catalytic component of a structure-specific DNA repair endonuclease responsible for the 5-incision during DNA repair. Responsible, in conjunction with SLX4, for the first step in the repair of interstrand cross-links (ICL). Participates in the processing of anaphase bridge-generating DNA structures, which consist in incompletely processed DNA lesions arising during S or G2 phase, and can result in cytokinesis failure. Also required for homology-directed repair (HDR) of DNA double-strand breaks, in conjunction with SLX4

Gene Wiki entry for ERCC1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ERCC1 Gene

Genomics for ERCC1 Gene

Regulatory Elements for ERCC1 Gene

Transcription factor binding sites by QIAGEN in the ERCC1 gene promoter:

Genomic Location for ERCC1 Gene

Start:
45,407,333 bp from pter
End:
45,478,837 bp from pter
Size:
71,505 bases
Orientation:
Minus strand

Genomic View for ERCC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ERCC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ERCC1 Gene

Proteins for ERCC1 Gene

  • Protein details for ERCC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P07992-ERCC1_HUMAN
    Recommended name:
    DNA excision repair protein ERCC-1
    Protein Accession:
    P07992
    Secondary Accessions:
    • B2RC01
    • B3KRR0
    • Q7Z7F5
    • Q96S40

    Protein attributes for ERCC1 Gene

    Size:
    297 amino acids
    Molecular mass:
    32562 Da
    Quaternary structure:
    • Heterodimer composed of ERCC1 isoform 1 and XPF/ERRC4.

    Three dimensional structures from OCA and Proteopedia for ERCC1 Gene

    Alternative splice isoforms for ERCC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ERCC1 Gene

Proteomics data for ERCC1 Gene at MOPED

Post-translational modifications for ERCC1 Gene

  • Ubiquitination at Lys162
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for ERCC1 Gene

Domains for ERCC1 Gene

Graphical View of Domain Structure for InterPro Entry

P07992

UniProtKB/Swiss-Prot:

ERCC1_HUMAN :
  • P07992
Family:
  • Belongs to the ERCC1/RAD10/SWI10 family.
genes like me logo Genes that share domains with ERCC1: view

No data available for Gene Families for ERCC1 Gene

Function for ERCC1 Gene

Molecular function for ERCC1 Gene

GENATLAS Biochemistry: excision repair cross-complementing rodent repair defect in CHO cells (includes overlapping antisense sequence),complementation group 1,yeast RAD10 homolog,specific for leukemic blasts
UniProtKB/Swiss-Prot Function: Isoform 1: Non-catalytic component of a structure-specific DNA repair endonuclease responsible for the 5-incision during DNA repair. Responsible, in conjunction with SLX4, for the first step in the repair of interstrand cross-links (ICL). Participates in the processing of anaphase bridge-generating DNA structures, which consist in incompletely processed DNA lesions arising during S or G2 phase, and can result in cytokinesis failure. Also required for homology-directed repair (HDR) of DNA double-strand breaks, in conjunction with SLX4

Gene Ontology (GO) - Molecular Function for ERCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000014 contributes_to single-stranded DNA endodeoxyribonuclease activity IDA 7559382
GO:0001094 TFIID-class transcription factor binding IEA --
GO:0003677 DNA binding --
GO:0003684 damaged DNA binding IDA 17720715
GO:0003697 single-stranded DNA binding IDA 16076955
genes like me logo Genes that share ontologies with ERCC1: view
genes like me logo Genes that share phenotypes with ERCC1: view

Animal Models for ERCC1 Gene

MGI Knock Outs for ERCC1:

miRNA for ERCC1 Gene

miRTarBase miRNAs that target ERCC1

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for ERCC1 Gene

Localization for ERCC1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ERCC1 Gene

Isoform 1: Nucleus.
Isoform 2: Cytoplasm. Nucleus.
Isoform 3: Nucleus.
Isoform 4: Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ERCC1 Gene COMPARTMENTS Subcellular localization image for ERCC1 gene
Compartment Confidence
nucleus 5
cytosol 4

Gene Ontology (GO) - Cellular Components for ERCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000109 nucleotide-excision repair complex IDA 3290851
GO:0000110 nucleotide-excision repair factor 1 complex IDA 10413517
GO:0000784 nuclear chromosome, telomeric region IDA 14690602
GO:0005634 nucleus --
GO:0005654 nucleoplasm TAS --
genes like me logo Genes that share ontologies with ERCC1: view

Pathways for ERCC1 Gene

genes like me logo Genes that share pathways with ERCC1: view

Pathways by source for ERCC1 Gene

Gene Ontology (GO) - Biological Process for ERCC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000718 nucleotide-excision repair, DNA damage removal TAS --
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair IEA --
GO:0000737 DNA catabolic process, endonucleolytic --
GO:0001302 replicative cell aging IEA --
GO:0006281 DNA repair TAS --
genes like me logo Genes that share ontologies with ERCC1: view

Compounds for ERCC1 Gene

(42) Novoseek inferred chemical compound relationships for ERCC1 Gene

Compound -log(P) Hits PubMed IDs
cisplatin 82.4 201
oxaliplatin 77.4 19
gemcitabine 75.3 43
thymidylate 74.8 25
irinotecan 67.6 5

(9) PharmGKB related drug/compound annotations for ERCC1 Gene

genes like me logo Genes that share compounds with ERCC1: view

Transcripts for ERCC1 Gene

Unigene Clusters for ERCC1 Gene

Excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ERCC1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b · 10c ^ 11a · 11b
SP1: - - - - - -
SP2: - - - - - - - -
SP3: - -
SP4: - - - -
SP5: - - - -
SP6: - - -
SP7: - - -
SP8: - - - - - - - -
SP9: - - -
SP10:

Relevant External Links for ERCC1 Gene

GeneLoc Exon Structure for
ERCC1
ECgene alternative splicing isoforms for
ERCC1

Expression for ERCC1 Gene

mRNA expression in normal human tissues for ERCC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ERCC1 Gene

SOURCE GeneReport for Unigene cluster for ERCC1 Gene Hs.435981

genes like me logo Genes that share expressions with ERCC1: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ERCC1 Gene

Orthologs for ERCC1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ERCC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ERCC1 35
  • 99.44 (n)
  • 100 (a)
ERCC1 36
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ERCC1 35
  • 85.62 (n)
  • 88.7 (a)
ERCC1 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ERCC1 35
  • 86.04 (n)
  • 88.51 (a)
ERCC1 36
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ercc1 35
  • 82.6 (n)
  • 86.2 (a)
Ercc1 16
Ercc1 36
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ERCC1 36
  • 53 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ERCC1 36
  • 62 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ercc1 35
  • 81.48 (n)
  • 83.84 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 68 (a)
OneToMany
-- 36
  • 52 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia ercc1-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia ercc1 35
  • 66.19 (n)
  • 72.86 (a)
Str.8961 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6312 35
zebrafish
(Danio rerio)
Actinopterygii ercc1 35
  • 68.52 (n)
  • 76.77 (a)
ercc1 36
  • 48 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004029 35
  • 58.46 (n)
  • 53.27 (a)
fruit fly
(Drosophila melanogaster)
Insecta Ercc1 35
  • 55.4 (n)
  • 51.85 (a)
Ercc1 36
  • 43 (a)
OneToOne
Ercc1 37
  • 46 (a)
worm
(Caenorhabditis elegans)
Secernentea ercc-1 36
  • 27 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RAD10 36
  • 23 (a)
OneToOne
RAD10 38
thale cress
(Arabidopsis thaliana)
eudicotyledons ERCC1 35
  • 51.82 (n)
  • 51.26 (a)
rice
(Oryza sativa)
Liliopsida Os10g0518900 35
  • 56.38 (n)
  • 54.23 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes swi10 35
  • 55.33 (n)
  • 51.78 (a)
Species with no ortholog for ERCC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ERCC1 Gene

ENSEMBL:
Gene Tree for ERCC1 (if available)
TreeFam:
Gene Tree for ERCC1 (if available)

Paralogs for ERCC1 Gene

No data available for Paralogs for ERCC1 Gene

Variants for ERCC1 Gene

Sequence variations from dbSNP and Humsavar for ERCC1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs11615 -- 45,420,395(-) CGCAA(C/T)GTGCC synonymous-codon, reference
rs957757 -- 45,428,246(+) cctgg(C/G)caact intron-variant
rs957758 -- 45,428,184(+) gctca(A/G)atgat intron-variant
rs1018765 -- 45,451,943(+) TTCTG(G/T)TTCTG intron-variant
rs1319052 -- 45,427,963(+) TTAAC(A/G)TTAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ERCC1 Gene

Variant ID Type Subtype PubMed ID
nsv833845 CNV Loss 17160897
nsv458711 CNV Gain 19166990
nsv428365 CNV Gain+Loss 18775914
nsv833846 CNV Loss 17160897
nsv912154 CNV Loss 21882294

Relevant External Links for ERCC1 Gene

HapMap Linkage Disequilibrium report
ERCC1
Human Gene Mutation Database (HGMD)
ERCC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ERCC1 Gene

Disorders for ERCC1 Gene

(1) OMIM Diseases for ERCC1 Gene (126380)

UniProtKB/Swiss-Prot

ERCC1_HUMAN
  • Cerebro-oculo-facio-skeletal syndrome 4 (COFS4) [MIM:610758]: A disorder of prenatal onset characterized by microcephaly, congenital cataracts, facial dysmorphism, neurogenic arthrogryposis, growth failure and severe psychomotor retardation. COFS is considered to be part of the nucleotide-excision repair disorders spectrum that include also xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome. {ECO:0000269 PubMed:17273966, ECO:0000269 PubMed:23623389}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(43) Novoseek inferred disease relationships for ERCC1 Gene

Disease -log(P) Hits PubMed IDs
xeroderma pigmentosum 84.4 18
nsclc 75.7 102
cockayne syndrome 74.2 2
cancer lung 67.7 59
ovarian cancer 60.9 50

Relevant External Links for ERCC1

GeneTests
ERCC1
GeneReviews
ERCC1
Genetic Association Database (GAD)
ERCC1
Human Genome Epidemiology (HuGE) Navigator
ERCC1
genes like me logo Genes that share disorders with ERCC1: view

Publications for ERCC1 Gene

  1. A nucleotide polymorphism in ERCC1 in human ovarian cancer cell lines and tumor tissues. (PMID: 9360634) Yu J.J. … Reed E. (Mutat. Res. 1997) 3 4 23
  2. Association between polymorphisms of ERCC1 and XPD and survival in non-small-cell lung cancer patients treated with cisplatin combination chemotherapy. (PMID: 15140544) Ryu J.S. … Hwang T.S. (Lung Cancer 2004) 3 23 48
  3. A multivariate analysis of genomic polymorphisms: prediction of clinical outcome to 5-FU/oxaliplatin combination chemotherapy in refractory colorectal cancer. (PMID: 15213713) Stoehlmacher J. … Lenz H.J. (Br. J. Cancer 2004) 3 23 48
  4. Single nucleotide polymorphisms and outcome in docetaxel-cisplatin-treated advanced non-small-cell lung cancer. (PMID: 15277258) Isla D. … Lianes P. (Ann. Oncol. 2004) 3 23 48
  5. Excision repair cross-complementation group 1 polymorphism predicts overall survival in advanced non-small cell lung cancer patients treated with platinum-based chemotherapy. (PMID: 15297394) Zhou W. … Christiani D.C. (Clin. Cancer Res. 2004) 3 23 48

Products for ERCC1 Gene

Sources for ERCC1 Gene

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