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Aliases & Descriptions for ERAF
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| | | Descriptions |
|---|
| Erythroid differentiation-related factor 2, 3 | | Erythroid-associated factor 3 | | alpha hemoglobin stabilising protein 2 | | erythroid associated factor 2 | | erythroid differentiation associated factor 2 |
|
| | Search outside databases for aliases for ERAF genePrevious GC identifers: GC16P030620 GC16P032035 GC16P031536 GC16P031575 |
Summaries for ERAF(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: AHSP_HUMAN, Q9NZD4Function: Act as a chaperone to prevent the harmful aggregation of alpha-hemoglobin during normal erythroid cell development. Specifically protects free alpha-hemoglobin from precipitation. It is predicted to modulate pathological states of alpha-hemoglobin excess such as beta-thalassemiaGene Wiki entry for ERAF |
Genomic Location for ERAF
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ERAF gene 
Entrez Gene cytogenetic band: 16p11.2 Ensembl cytogenetic band: 16p11.2 HGNC cytogenetic band: 16p11.1ERAF Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16P031446:
(about GC identifiers)
Start:
|
31,446,680 bp from pter |
End:
|
31,447,625 bp from pter |
Size:
|
946 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000016.8 NT_010393.15
| Proteins for ERAF
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: AHSP_HUMAN, Q9NZD4 (See
protein sequence)Recommended Name: Alpha-hemoglobin-stabilizing protein Size: 102 amino acids; 11840 Da
Subunit: Monomer. Forms an heterodimer with free alpha-hemoglobin. Does not bind beta-hemoglobin nor alpha(2)beta(2) hemoglobin A
Subcellular location: Cytoplasm
PDB structures from and Proteopedia :1W09 (3D)
 1W0A (3D)
 1W0B (3D)
 1XZY (3D)
 1Y01 (3D)
 1Z8U (3D)
 
Secondary accessions: Q8TD01REFSEQ proteins: NP_057717.1
ENSEMBL proteins: ENSP00000307199
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ERAF 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ERAF: Assays for ERAF: | Protein
Domains/ Families for ERAF(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9NZD4
ProtoNet protein and cluster: Q9NZD4 UniProtKB/Swiss-Prot: AHSP_HUMAN, Q9NZD4Similarity: Belongs to the AHSP family | Gene Function for ERAF
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016633
Applied Biosystems Silencer® siRNAs for ERAF
Sigma-Aldrich siRNA for ERAF  Sigma-Aldrich shRNA for ERAF  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_016633                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_016633                                  untagged cDNA clone in CMV expression vector: NM_016633 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_016633
UniProtKB/Swiss-Prot: AHSP_HUMAN, Q9NZD4Function: Act as a chaperone to prevent the harmful aggregation of alpha-hemoglobin during normal erythroid cell development. Specifically protects free alpha-hemoglobin from precipitation. It is predicted to modulate pathological states of alpha-hemoglobin excess such as beta-thalassemiaInduction: By GATA-1 during erythroid maturation5 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Eraf):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ERAF
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for ERAF 
5/11 Interacting proteins for ERAF (ENSP000003071993 Q9NZD41, 2) via UniProtKB, MINT, and/or STRING (see all 11
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ERAF(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ERAF 10/29 Novoseek chemical compound relationships for ERAF gene (see all 29
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| nitric oxide |
77.67 |
306 |
8107883 (4), 7743332 (4), 15714750 (4), 8845443 (2) (see all 99) |
| cgmp |
76.80 |
44 |
1311528 (4), 1868189 (2), 1794204 (2), 1318427 (2) (see all 27) |
| guanylate |
76.07 |
22 |
1681884 (2), 1868189 (2), 8447442 (1), 8638522 (1) (see all 18) |
| dbnbs |
61.00 |
2 |
8282215 (1) |
| methylene |
57.95 |
14 |
1629068 (1), 8447442 (1), 2162879 (1), 1991651 (1) (see all 10) |
| thromboxane a2 |
52.75 |
11 |
1296206 (3), 1318427 (2), 8044917 (1), 10072715 (1) (see all 6) |
| superoxide |
51.81 |
11 |
7685446 (1), 1658794 (1), 8461525 (1), 1309423 (1) (see all 6) |
| adp |
42.82 |
12 |
8017760 (2), 1697386 (1), 9402468 (1), 9515109 (1) (see all 7) |
| thromboxane |
40.00 |
5 |
17048133 (1), 1756024 (1), 1717768 (1), 1395116 (1) |
| calcium |
37.97 |
50 |
1376838 (4), 2381766 (3), 7947609 (3), 1794204 (2) (see all 23) |
About this table
|
Transcripts for ERAF(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016633
Sigma-Aldrich siRNA for ERAF  Sigma-Aldrich shRNA for ERAF  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_016633 REFSEQ mRNAs for ERAF gene: NM_016633.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_016633               OriGene GFP tagged cDNA clone in CMV expression vector: NM_016633                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_016633                                  untagged cDNA clone in CMV expression vector: NM_016633  Additional cDNA sequence: AF112995.1 AF147435.1 AF208865.1 AF364517.1 BC035842.1 CR599801.1 3 DOTS entries: DT.100033632 DT.95130651 DT.95130637 24/92 AceView cDNA sequences (see all 92
):N64110 AI370497 CR599801 BU658045 BG940214 BG943419 H52289 BG944377 AF208865 BX422380 BG940046 C21225 BG942798 BQ189659 T53200 BC035842 BG942782 BG939943 CK300787 H52526 BG943368 H94872 BG943964 R91558
highest scoring ESTs for ERAF:H94872 AA033701 AA033702 AA092294 AA328577 AA338152 AA339867 AA723496 AF208865 AF364517 Unigene Cluster for ERAF: Erythroid associated factor Hs.274309 [show with all ESTs]Unigene Representative Sequence: BI834180
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for ERAF
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | |
| SP1: | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ERAF
1 Ensembl transcript including schematic representation: ENST00000302312
|
Expression for ERAF
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ERAF expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ERAF
1 / 2 / 3 3 probe-sets matching ERAF gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TCCTTAGGCT
SOURCE GeneReport for Unigene cluster: Hs.274309 UniProtKB/Swiss-Prot: AHSP_HUMAN, Q9NZD4Tissue specificity: Expressed in blood and bone marrow |
Orthologs for ERAF
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ERAF gene from 4 species
About this table Species with no ortholog for ERAF
ENSEMBL Gene Tree for ERAF | Paralogs for ERAF(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for ERAF(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ERAF (up to first 250kb)
|
Disorders & Mutations for ERAF
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 605821
10/35 Novoseek disease relationships for ERAF gene (see all 35
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| vasospasm |
64.15 |
5 |
9402468 (1), 9515109 (1), 1717775 (1), 7568903 (1) (see all 5) |
| vascular dilation |
58.05 |
2 |
1928200 (1), 1343264 (1) |
| atherosclerosis |
53.56 |
20 |
7568903 (2), 2045172 (1), 1868189 (1), 8222147 (1) (see all 15) |
| coronary vasospasm |
49.18 |
1 |
11543600 (1) |
| vascular diseases |
41.61 |
5 |
14650203 (2), 1868189 (1), 1921472 (1) |
| hypercholesterolemia |
38.70 |
2 |
7568903 (1), 9340578 (1) |
| myocardial ischemia |
36.64 |
5 |
8461525 (1), 2194809 (1), 7832112 (1), 10094179 (1) |
| beta-thalassemia |
34.44 |
12 |
17874450 (3), 15545996 (2), 16696909 (2), 16186125 (1) |
| coronary spasm |
30.00 |
1 |
8488083 (1) |
| hypertension pulmonary |
28.34 |
4 |
1868189 (1), 1921472 (1), 2117136 (1), 1424046 (1) |
About this table
|
Medical News for ERAF(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ERAF (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/254 PubMed articles for ERAF gene (see all 254
):- An abundant erythroid protein that stabilizes free alpha-haemoglobin. (PubMed id 12066189)2, 3, 4 Kihm A.J....Weiss M.J. (2002)
- A novel erythroid-specific marker of transmissible spongiform encephalopathies. (PubMed id 11231637)2, 3, 4 Miele G.... Clinton M. (2001)
- Biophysical characterization of the alpha-globin binding protein alpha-hemoglobin stabilizing protein. (PubMed id 12192002)1, 3, 4 Gell D.... Mackay J.P. (2002)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152)3, 4 Zhang Q.H....Chen Z. (2000)
- Reduction of AHSP synthesis in hemin-induced K562 cells and EPO-induced CD34(+) cells leads to alpha-globin precipitation, impairment of normal hemoglobin production, and increased cell death. (PubMed id 18179859)1, 3 Pinho F.O....Costa F.F. (2008)
- Population analysis of the alpha hemoglobin stabilizing protein (AHSP) gene identifies sequence variants that alter expression and function. (PubMed id 17874450)1, 3 dos Santos C.O....Weiss M.J. (2008)
- GATA-1 and Oct-1 are required for expression of the human alpha-hemoglobin-stabilizing protein gene. (PubMed id 16186125)1, 3 Gallagher P.G....Bodine D.M. (2005)
- Evaluation of alpha hemoglobin stabilizing protein (AHSP) as a genetic modifier in patients with beta thalassemia. (PubMed id 14715623)1, 3 Viprakasit V....Higgs D.R. (2004)
- An iron responsive element-like stem-loop regulates alpha-hemoglobin-stabilizing protein mRNA. (PubMed id 18676996)1, 3 dos Santos C.O....Weiss M.J. (2008)
|
Search for ERAF
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ERAF
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ERAF
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ERAF(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ERAF(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ERAF:

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| | Recombinant Proteins (Ahsp) | | Antibodies (Ahsp) |
| | | Search Tocris compounds for ERAF |
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Incremental update: 13 Oct 2009
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