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EPYC Gene(Protein Coding)

Epiphycan

GCID:
GC12M090963
GIFtS:
54
Genes Participants
UDN Logo

Aliases for EPYC Gene

Aliases for EPYC Gene

  • Epiphycan 2 3 3 5
  • Dermatan Sulfate Proteoglycan 3 2 3 4
  • Small Chondroitin/Dermatan Sulfate Proteoglycan 3 4
  • Epiphycan Proteoglycan 2 3
  • Proteoglycan-Lb 3 4
  • SLRR3B 3 4
  • Pg-Lb 3 4
  • DSPG3 3 4
  • PGLB 3 4
  • Dermatan Sulphate Proteoglycan 3 2

External Ids for EPYC Gene

Previous HGNC Symbols for EPYC Gene

  • DSPG3

Previous GeneCards Identifiers for EPYC Gene

  • GC12M089881
  • GC12M091357
  • GC12M088425

Summaries for EPYC Gene

Entrez Gene Summary for EPYC Gene

  • Dermatan sulfate proteoglycan 3 is a member of the small leucine-rich repeat proteoglycan family. This gene is composed of seven exons. It regulates fibrillogenesis by interacting with collagen fibrils and other extracellular matrix proteins. [provided by RefSeq, Jul 2008]

GeneCards Summary for EPYC Gene

EPYC (Epiphycan) is a Protein Coding gene. Diseases associated with EPYC include Corneal Dystrophy, Posterior Amorphous and Cornea Plana. Among its related pathways are Phospholipase-C Pathway and ERK Signaling. GO annotations related to this gene include glycosaminoglycan binding. An important paralog of this gene is OPTC.

UniProtKB/Swiss-Prot for EPYC Gene

  • May have a role in bone formation and also in establishing the ordered structure of cartilage through matrix organization.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EPYC Gene

Genomics for EPYC Gene

Products:

  1. Regulatory Element

Regulatory Elements for EPYC Gene

Enhancers for EPYC Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G091098 1.2 Ensembl ENCODE dbSUPER 10.8 -91.3 -91281 1.9 GTF2F1 SMARCC1 BHLHE40 CEBPB CEBPG EP300 ATF2 JUND GATA3 ATF3 KERA EPYC LUM GC12P091066
GH12G090978 0.6 ENCODE 11.3 +27.9 27928 2.6 RNF2 MTA2 TAL1 DPF2 TCF12 ARID1B SMARCA4 NFE2 EMSY KERA LUM EPYC CCER1
GH12G091036 0.5 ENCODE 11.5 -29.7 -29737 2.0 GATA2 POLR2A RAD21 NR2F2 KERA EPYC DCN
GH12G091100 0.2 ENCODE 10.3 -92.5 -92506 0.4 KERA EPYC LUM GC12P091066
GH12G091009 0.8 ENCODE 0.7 -1.6 -1593 0.2 TBL1XR1 JUN BMI1 EBF1 RELA ARID3A EED ETV6 RELB IKZF2 KERA EPYC
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EPYC on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the EPYC gene promoter:

Genomic Location for EPYC Gene

Chromosome:
12
Start:
90,963,679 bp from pter
End:
91,007,906 bp from pter
Size:
44,228 bases
Orientation:
Minus strand

Genomic View for EPYC Gene

Genes around EPYC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EPYC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EPYC Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for EPYC Gene

Proteins for EPYC Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for EPYC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q99645-EPYC_HUMAN
    Recommended name:
    Epiphycan
    Protein Accession:
    Q99645
    Secondary Accessions:
    • A8K3M7
    • Q8NEJ5

    Protein attributes for EPYC Gene

    Size:
    322 amino acids
    Molecular mass:
    36637 Da
    Quaternary structure:
    No Data Available

neXtProt entry for EPYC Gene

Protein Expression for EPYC Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for EPYC Gene

  • The O-linked polysaccharides on Thr-60 and Ser-96 are probably the mucin type linked to GalNAc. There is one glycosaminoglycan chain, known to be dermatan sulfate, and it is probably the O-glycosylation at Ser-64 (By similarity).
  • Glycosylation at isoforms=60, Ser64, isoforms=96, Asn283, and Asn302
  • Modification sites at PhosphoSitePlus

Other Protein References for EPYC Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for EPYC Gene

Domains & Families for EPYC Gene

Gene Families for EPYC Gene

HGNC:

Protein Domains for EPYC Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for EPYC Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q99645

UniProtKB/Swiss-Prot:

EPYC_HUMAN :
  • Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class III subfamily.
Family:
  • Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class III subfamily.
genes like me logo Genes that share domains with EPYC: view

Function for EPYC Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for EPYC Gene

UniProtKB/Swiss-Prot Function:
May have a role in bone formation and also in establishing the ordered structure of cartilage through matrix organization.

Gene Ontology (GO) - Molecular Function for EPYC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005539 glycosaminoglycan binding TAS 8975717
genes like me logo Genes that share ontologies with EPYC: view
genes like me logo Genes that share phenotypes with EPYC: view

Animal Models for EPYC Gene

MGI Knock Outs for EPYC:

Animal Model Products

  • Taconic Biosciences Mouse Models for EPYC

miRNA for EPYC Gene

miRTarBase miRNAs that target EPYC

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for EPYC Gene

Localization for EPYC Gene

Subcellular locations from UniProtKB/Swiss-Prot for EPYC Gene

Secreted, extracellular space, extracellular matrix.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for EPYC gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 2

Gene Ontology (GO) - Cellular Components for EPYC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005578 proteinaceous extracellular matrix IBA,IEA --
GO:0005615 extracellular space IBA --
genes like me logo Genes that share ontologies with EPYC: view

Pathways & Interactions for EPYC Gene

genes like me logo Genes that share pathways with EPYC: view

Pathways by source for EPYC Gene

Gene Ontology (GO) - Biological Process for EPYC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007409 axonogenesis IBA --
GO:0007565 female pregnancy TAS 8975717
genes like me logo Genes that share ontologies with EPYC: view

No data available for SIGNOR curated interactions for EPYC Gene

Drugs & Compounds for EPYC Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for EPYC Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for EPYC Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(43) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EPYC Gene

Epiphycan:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for EPYC Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7
SP1:
SP2:

Relevant External Links for EPYC Gene

GeneLoc Exon Structure for
EPYC
ECgene alternative splicing isoforms for
EPYC

Expression for EPYC Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EPYC Gene

mRNA expression in normal human tissues for EPYC Gene
mRNA expression by BioGPS for EPYC GenemRNA expression by GTEx for EPYC Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for EPYC Gene

This gene is overexpressed in Ovary (x6.4), Adipose - Visceral (Omentum) (x5.7), and Prostate (x5.5).

Protein differential expression in normal tissues from HIPED for EPYC Gene

This gene is overexpressed in Fetal heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for EPYC Gene



Protein tissue co-expression partners for EPYC Gene

NURSA nuclear receptor signaling pathways regulating expression of EPYC Gene:

EPYC

SOURCE GeneReport for Unigene cluster for EPYC Gene:

Hs.435680

mRNA Expression by UniProt/SwissProt for EPYC Gene:

Q99645-EPYC_HUMAN
Tissue specificity: Cartilage, ligament, and placenta.
genes like me logo Genes that share expression patterns with EPYC: view

Primer Products

No data available for Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EPYC Gene

Orthologs for EPYC Gene

This gene was present in the common ancestor of chordates.

Orthologs for EPYC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia EPYC 34 35
  • 99.59 (n)
oppossum
(Monodelphis domestica)
 Mammalia EPYC 35
  • 91 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia EPYC 34 35
  • 90.65 (n)
dog
(Canis familiaris)
 Mammalia EPYC 34 35
  • 89.79 (n)
mouse
(Mus musculus)
 Mammalia Epyc 34 16 35
  • 83.95 (n)
rat
(Rattus norvegicus)
 Mammalia Epyc 34
  • 83.95 (n)
platypus
(Ornithorhynchus anatinus)
 Mammalia EPYC 35
  • 81 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves EPYC 35 34
  • 70.48 (n)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia EPYC 35
  • 72 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia epyc 34
  • 68.99 (n)
zebrafish
(Danio rerio)
 Actinopterygii epyc 35
  • 21 (a)
 OneToOne
Species where no ortholog for EPYC was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for EPYC Gene

ENSEMBL:
Gene Tree for EPYC (if available)
TreeFam:
Gene Tree for EPYC (if available)

Paralogs for EPYC Gene

Paralogs for EPYC Gene

(2) SIMAP similar genes for EPYC Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with EPYC: view

Variants for EPYC Gene

Sequence variations from dbSNP and Humsavar for EPYC Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000016109 -- 91,005,926(+) AAAGC(A/G)GTATT upstream-variant-2KB
rs1000018505 -- 90,985,058(+) CTTTA(G/T)CTGCA intron-variant
rs1000049067 -- 90,997,238(+) GTGTT(C/T)ATTGA intron-variant
rs1000093996 -- 91,003,020(+) GCAGA(A/G)TTGAC intron-variant
rs1000149450 -- 91,003,327(+) TCCTC(A/C)GTATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EPYC Gene

Variant ID Type Subtype PubMed ID
nsv832483 CNV gain 17160897

Variation tolerance for EPYC Gene

Residual Variation Intolerance Score: 59.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.91; 59.34% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for EPYC Gene

Human Gene Mutation Database (HGMD)
EPYC
SNPedia medical, phenotypic, and genealogical associations of SNPs for
EPYC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EPYC Gene

Disorders for EPYC Gene

MalaCards: The human disease database

(3) MalaCards diseases for EPYC Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
corneal dystrophy, posterior amorphous
  • posterior amorphous corneal dystrophy
cornea plana
  • flat cornea
stromal dystrophy
- elite association - COSMIC cancer census association via MalaCards
Search EPYC in MalaCards View complete list of genes associated with diseases

Relevant External Links for EPYC

Genetic Association Database (GAD)
EPYC
Human Genome Epidemiology (HuGE) Navigator
EPYC
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EPYC
genes like me logo Genes that share disorders with EPYC: view

No data available for UniProtKB/Swiss-Prot and Genatlas for EPYC Gene

Publications for EPYC Gene

  1. Characterization of human DSPG3, a small dermatan sulfate proteoglycan. (PMID: 8975717) Deere M. … Hecht J.T. (Genomics 1996) 2 3 4 64
  2. The association of haplotype at the lumican gene with high myopia susceptibility in Taiwanese patients. (PMID: 19616852) Chen Z.T. … Lin L.L. (Ophthalmology 2009) 3 46 64
  3. An evaluation of OPTC and EPYC as candidate genes for high myopia. (PMID: 19844586) Wang P. … Zhang Q. (Mol. Vis. 2009) 3 46 64
  4. The association of single nucleotide polymorphisms in the 5'-regulatory region of the lumican gene with susceptibility to high myopia in Taiwan. (PMID: 16902402) Wang I.J. … Lin L.L. (Mol. Vis. 2006) 3 46 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for EPYC Gene

  • Cloud-Clone Corp. Antibodies for EPYC
  • Cloud-Clone Corp. Proteins for EPYC
  • Cloud-Clone Corp Assay Kits for EPYC

Sources for EPYC Gene

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