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Aliases & Descriptions for EPHB6
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EphB6 1 | | HEP 1, 2, 3, 5 | | MGC129910 2 | | MGC129911 2 |
| | | Descriptions |
|---|
| EPH receptor B6 2 | | Tyrosine-protein kinase-defective receptor EPH-6 3 | | ephrin receptor EphB6 2 |
|
| | Search outside databases for aliases for EPHB6 genePrevious GC identifers: GC07P140878 GC07P141946 GC07P142023 GC07P142069 |
Summaries for EPHB6(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for EPHB6: Ephrin receptors and their ligands, the ephrins, mediate numerous developmental processes, particularly in the nervous system. Based on their structures and sequence relationships, ephrins are divided into the ephrin-A (EFNA) class, which are anchored to the membrane by a glycosylphosphatidylinositol linkage, and the ephrin-B (EFNB) class, which are transmembrane proteins. The Eph family of receptors are divided into 2 groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands. Ephrin receptors make up the largest subgroup of the receptor tyrosine kinase (RTK) family. The ephrin receptor encoded by this gene lacks the kinase activity of most receptor tyrosine kinases and binds to ephrin-B ligands. [provided by RefSeq] UniProtKB/Swiss-Prot: EPHB6_HUMAN, O15197Function: Kinase-defective receptor for members of the ephrin-B family. Binds to ephrin-B1 and ephrin-B2. Modulates cell adhesion and migration by exerting both positive and negative effects upon stimulation with ephrin-B2. Inhibits JNK activation, T cell receptor-induced IL-2 secretion and CD25 expression upon stimulation with ephrin-B2Gene Wiki entry for EPHB6 |
Genomic Location for EPHB6
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EPHB6 gene 
Entrez Gene cytogenetic band: 7q33-q35 Ensembl cytogenetic band: 7q34 HGNC cytogenetic band: 7q33-q35EPHB6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07P142262:
(about GC identifiers)
Start:
|
142,262,914 bp from pter |
End:
|
142,278,969 bp from pter |
Size:
|
16,056 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr7+,CRA_TCAG 141,954,656-141,970,711 |
RefSeq DNA sequence:- NC_000007.12 NT_007914.14 NT_079596.2
| Proteins for EPHB6
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: EPHB6_HUMAN, O15197 (See
protein sequence)Recommended Name: Ephrin type-B receptor 6 precursor Size: 1006 amino acids; 109273 Da
Subunit: Interacts with CBL and EPHB1. Interacts with FYN; this interaction takes place in a ligand-independent manner
Subcellular location: Membrane; Single-pass type I membrane protein
Subcellular location: Isoform 3: Secreted (Probable)
Secondary accessions: A4D2I7 A8CDT5 Q2TB23 Q2TB24Alternative splicing: 3 isoforms: O15197-1 O15197-2 O15197-3 Post-translational modifications:
Ligand-binding increases phosphorylation on tyrosine residues. Phosphorylation on tyrosine residues is mediated by transphosphorylation by the catalytically active EPHB1 in a ligand-independent manner. Tyrosine phosphorylation of the receptor may act as a switch on the functional transition from cell adhesion/attraction to de-adhesion/repulsion1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004436.2
ENSEMBL proteins: ENSP00000376684 ENSP00000222847
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016020 | membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- | About this table
Antibodies for EPHB6: Assays for EPHB6: | Protein
Domains/ Families for EPHB6(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O15197
ProtoNet protein and cluster: O15197 5 Blocks protein families: IPB001090 Ephrin receptor IPB001426 Receptor tyrosine kinase IPB001660 Sterile alpha motif SAM IPB003962 Fibronectin type III repeat signature IPB011510 Sterile alpha motif homology 2
UniProtKB/Swiss-Prot: EPHB6_HUMAN, O15197Domain: The protein kinase domain is predicted to be catalytically inactive. Its extracellular domain is capable of promoting cell adhesion and migration in response to low concentrations of ephrin-B2, but its cytoplasmic domain is essential for cell repulsion and inhibition of migration induced by high concentrations of ephrin-B2Similarity: Belongs to the protein kinase superfamily. Tyr protein kinase family. Ephrin receptor subfamilySimilarity: Contains 2 fibronectin type-III domainsSimilarity: Contains 1 protein kinase domainSimilarity: Contains 1 SAM (sterile alpha motif) domain | Gene Function for EPHB6
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004445
Applied Biosystems Silencer® siRNAs for EPHB6
Sigma-Aldrich siRNA and siRNA Panels for EPHB6  Sigma-Aldrich shRNA Panels and shRNA for EPHB6  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004445                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004445                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004445 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004445
UniProtKB/Swiss-Prot: EPHB6_HUMAN, O15197Function: Kinase-defective receptor for members of the ephrin-B family. Binds to ephrin-B1 and ephrin-B2. Modulates cell adhesion and migration by exerting both positive and negative effects upon stimulation with ephrin-B2. Inhibits JNK activation, T cell receptor-induced IL-2 secretion and CD25 expression upon stimulation with ephrin-B2Genatlas biochemistry entry for EPHB6:EPH-related tyrosine kinase receptor,135kDa,binding ephrin B6,expressed in projecting neurons and their target fields,involved in short-range contact-mediated axonal guidance12 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Ephb6):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for EPHB6
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for EPHB6 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for EPHB6 
5/20 Interacting proteins for EPHB6 (O151972 ENSP000002228473) via UniProtKB, MINT, and/or STRING (see all 20
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006468 | protein amino acid phosphorylation |
IEA | -- | | GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway |
IEA | -- | About this table
|
Drugs & Compounds for EPHB6(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for EPHB6 1 Novoseek chemical compound relationship for EPHB6 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tyrosine |
41.68 |
5 |
15955811 (3), 11466354 (2) |
About this table
|
Transcripts for EPHB6(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004445
Sigma-Aldrich siRNA and siRNA Panels for EPHB6  Sigma-Aldrich shRNA Panels and shRNA for EPHB6  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004445 REFSEQ mRNAs for EPHB6 gene: NM_004445.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004445               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004445                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004445                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004445  Additional cDNA sequence: BC015495.1 BC047892.1 BC051028.1 BC056159.1 BC110606.1 BC110607.1 D83492.1 EU054308.1 12 DOTS entries: DT.313090 DT.91679781 DT.75106766 DT.99959485 DT.100678843 DT.95108033 DT.100019851 DT.102821285 DT.121076990 DT.100022150 DT.100816445 DT.121076810 7 AceView cDNA sequences:BC056159 AL832533 BC051028 NM_004445 D83492 BC047892 BC015495
highest scoring ESTs for EPHB6:D83492 BC047892 BC051028 BC056159 BX415689 AA351300 AA609284 AA815237 AA913460 AA984196 Unigene Cluster for EPHB6: EPH receptor B6 Hs.380089 [show with all ESTs]Unigene Representative Sequence: BC051028
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for EPHB6 (see all 7
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | 11a | · | 11b | · | 11c | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15 | ^ | 16a | · | 16b | ^ | 17 | ^ | 18 | ^ | 19 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for EPHB6
2 Ensembl transcripts including schematic representations: ENST00000392957
ENST00000222847
|
Expression for EPHB6
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EPHB6 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EPHB6
1 / 2 / 3 3 probe-sets matching EPHB6 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGGGACGTGA
SOURCE GeneReport for Unigene cluster: Hs.380089
Expression variation in blood from EXPOLDB for EPHB6 UniProtKB/Swiss-Prot: EPHB6_HUMAN, O15197Tissue specificity: Expressed in brain. Expressed in non invasive breast carcinoma cell lines (at protein level). Strong expression in brain and pancreas, and weak expression in other tissues, such as heart, placenta, lung, liver, skeletal muscle and kidney. Expressed in breast non invasive tumors but not in metastatic lesions. Isoform 3 is expressed in cell lines of glioblastomas, anaplastic astrocytomas, gliosarcomas and astrocytomas. Isoform 3 is not detected in normal tissues |
Orthologs for EPHB6
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for EPHB6 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for EPHB6
ENSEMBL Gene Tree for EPHB6 | Paralogs for EPHB6(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EPHB6 gene
- TNK12 EPHB42
|
SNPs/Variants for EPHB6(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for EPHB6 (up to first 250kb)
|
Disorders & Mutations for EPHB6
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602757
4 Novoseek disease relationships for EPHB6 gene
About this table
|
Medical News for EPHB6(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for EPHB6 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/37 PubMed articles for EPHB6 gene (see all 37
):- Biphasic functions of the kinase-defective Ephb6 receptor in cell adhesion and migration. (PubMed id 15955811)1, 3, 4 Matsuoka H....Nakamoto M. (2005)
- Expression of a kinase-defective Eph-like receptor in the normal human brain. (PubMed id 9207182)1, 3, 4 Matsuoka H.... Matsui T. (1997)
- EphB6 receptor significantly alters invasiveness and other phenotypic characteristics of human breast carcinoma cells. (PubMed id 19234485)3, 4 Fox B.P. and Kandpal R.P. (2009)
- Erythropoietin-producing hepatocyte B6 variant-derived peptides with the ability to induce glioma-reactive cytotoxic T lymphocytes in human leukocyte antigen-A2+ glioma patients. (PubMed id 18754880)3, 4 Jin M....Yamada A. (2008)
- Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)3, 4 Zhang Z. and Henzel W.J. (2004)
- Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)3, 4 Scherer S.W....Tsui L.C. (2003)
- The EphB6 receptor inhibits JNK activation in T lymphocytes and modulates T cell receptor-mediated responses. (PubMed id 12517763)3, 4 Freywald A....Roifman C.M. (2003)
- The DNA sequence of human chromosome 7. (PubMed id 12853948)3, 4 Hillier L.W.... Wilson R.K. (2003)
- The kinase-null EphB6 receptor undergoes transphosphorylation in a complex with EphB1. (PubMed id 11713248)3, 4 Freywald A....Roifman C.M. (2002)
- Loss of EphB6 expression in metastatic melanoma. (PubMed id 14612926)1, 3 Hafner C....Vogt T. (2003)
|
Search for EPHB6
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing EPHB6
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EPHB6
(According to HUGE)
About This Section
| -- |
Specialized Databases showing EPHB6(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for EPHB6(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EPHB6:

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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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