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Aliases & Descriptions for EPHA3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 2.7.10.1 3 ETK 2 , 3 ETK1 2 , 3 , 5 EphA3 1 HEK 1 , 2 , 3 , 5 HEK4 1 , 2 , 3 TYRO4 2 , 3
Descriptions EPH receptor A3 2 TYRO4 protein tyrosine kinase 2 Tyrosine-protein kinase TYRO4 3 Tyrosine-protein kinase receptor ETK1 3 eph-like tyrosine kinase 1 2 ephrin receptor EphA3 2 human embryo kinase 1 2
Search outside databases for aliases for EPHA3 genePrevious GC identifers: GC03P089525 GC03P092010 GC03P089036 GC03P089077
Summaries for EPHA3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for EPHA3 : This gene belongs to the ephrin receptor subfamily of the protein-tyrosine kinase family. EPH andEPH-related receptors have been implicated in mediating developmental events, particularly in thenervous system. Receptors in the EPH subfamily typically have a single kinase domain and anextracellular region containing a Cys-rich domain and 2 fibronectin type III repeats. The ephrinreceptors are divided into 2 groups based on the similarity of their extracellular domainsequences and their affinities for binding ephrin-A and ephrin-B ligands. This gene encodes aprotein that binds ephrin-A ligands. Two alternatively spliced transcript variants have beendescribed for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: EPHA3_HUMAN, P29320 Function : Receptor for members of the ephrin-A family. Binds to ephrin-A2, -A3, -A4 and -A5. Couldplay a role in lymphoid function
Gene Wiki entry for EPHA3
Genomic Location for EPHA3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the EPHA3 gene Entrez Gene cytogenetic band: 3p11.2 Ensembl cytogenetic band: 3p11.2 HGNC cytogenetic band: 3p11.2 EPHA3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03P089239:
(about GC identifiers )
Start:
89,239,364 bp from pter
End:
89,613,974 bp from pter
Size:
374,611 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000003.10 NT_022459.14 Proteins for EPHA3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: EPHA3_HUMAN, P29320 (See
protein sequence )Recommended Name: Ephrin type-A receptor 3 precursor Size : 983 amino acids; 110131 Da
Subcellular location : Isoform 1: Cell membrane; Single-pass type I membrane protein
Subcellular location : Isoform 2: Secreted
PDB structures from and Proteopedia : 2GSF (3D)
 2QO2 (3D)
 2QO7 (3D)
 2QO9 (3D)
 2QOB (3D)
 2QOC (3D)
 2QOD (3D)
 2QOF (3D)
 2QOI (3D)
 2QOK (3D)
 2QOL (3D)
 2QON (3D)
 2QOO (3D)
 2QOQ (3D)
 3DZQ (3D)
 3FXX (3D)
 3FY2 (3D)
 
Secondary accessions : Q9H2V3 Q9H2V4Alternative splicing : 2 isoforms : P29320-1 P29320-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_005224.2 NP_872585.1 ENSEMBL proteins: ENSP00000337451 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for EPHA3: Assays for EPHA3:
Protein
Domains/ Families for EPHA3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P29320 ProtoNet protein and cluster: P29320
5/6 Blocks protein families (see all 6
): IPB001090 Ephrin receptor IPB001426 Receptor tyrosine kinase IPB001660 Sterile alpha motif SAM IPB003962 Fibronectin type III repeat signature IPB008266 Tyrosine protein kinase UniProtKB/Swiss-Prot: EPHA3_HUMAN, P29320 Similarity : Belongs to the protein kinase superfamily. Tyr protein kinase family. Ephrin receptorsubfamily Similarity : Contains 2 fibronectin type-III domainsSimilarity : Contains 1 protein kinase domainSimilarity : Contains 1 SAM (sterile alpha motif) domain
Gene Function for EPHA3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_182644 Applied Biosystems Silencer ® siRNAs for EPHA3 Sigma-Aldrich siRNA and siRNA Panels for EPHA3 Sigma-Aldrich shRNA Panels and shRNA for EPHA3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_005233                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_005233                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_005233  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005233 UniProtKB/Swiss-Prot: EPHA3_HUMAN, P29320 Function : Receptor for members of the ephrin-A family. Binds to ephrin-A2, -A3, -A4 and -A5. Couldplay a role in lymphoid function Catalytic activity : ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme Number (IUBMB): EC 2.7.10.1
Genatlas biochemistry entry for EPHA3 :EPH-related tyrosine kinase receptor binding ephrins A,expressed in projecting neurons and theirtarget fields,involved in short-range contact-mediated axonal guidance,expressed by some pre-B andT cell lines,not detectable on normal adult human tissues
5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Epha3) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for EPHA3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for EPHA3 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for EPHA3 5/35 Interacting proteins for EPHA3 (ENSP00000337451 3 ) via UniProtKB, MINT, and/or STRING (see all 35
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006468 protein amino acid phosphorylation
IEA -- GO:0007165 signal transduction
TAS 1737782 GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway
IEA --
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Drugs & Compounds for EPHA3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for EPHA3 10/30 Novoseek chemical compound relationships for EPHA3 gene (see all 30
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tab-1
71.86
3
11745395 (1), 17052891 (1), 17932218 (1)
threonine
62.43
19
16641196 (1), 9405407 (1), 17000703 (1), 16895519 (1) (see all 18 )
pd 98,059
61.70
10
18778461 (1), 10925306 (1), 12628005 (1), 14690534 (1) (see all 9 )
tyrosine
56.35
18
1334998 (2), 8188238 (2), 15151996 (1), 18762249 (1) (see all 15 )
cl 100
53.95
1
15030167 (1)
phosphatidylinositol
50.89
5
14633175 (1), 16322251 (1), 11382770 (1), 12589827 (1) (see all 5 )
phosphoinositide
47.17
7
15468165 (1), 16885398 (1), 16895519 (1), 19025518 (1) (see all 7 )
wortmannin
38.35
3
15468165 (1), 9934861 (1), 12589827 (1)
17-(allylamino)-17-demethoxygeldanamycin
37.78
1
17308059 (1)
sp 600125
35.84
3
18778461 (1), 15670787 (1), 12589827 (1)
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Transcripts for EPHA3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_182644 Sigma-Aldrich siRNA and siRNA Panels for EPHA3 Sigma-Aldrich shRNA Panels and shRNA for EPHA3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_005233 NM_182644
REFSEQ mRNAs for EPHA3 gene (2 alternative transcripts): NM_005233.5 NM_182644.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005233 NM_182644
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_005233                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_005233                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_005233  
Additional cDNA sequence: AF213459.1 AF213460.1 AK024352.1 AK291411.1 BC026247.1 BC063282.1 M83941.1
4 DOTS entries : DT.97837000 DT.208723 DT.40125530 DT.100662313
24/45 AceView cDNA sequences (see all 45
):BE327884 NM_182644 BC063282 AF213460 AL042479 AU120483 NM_005233 AK024352 BC026247 T28603 AF213459 AU137594 AI741389 AI918950 BG033947 AI590014 D81814 BM927323 AU136712 BQ003325 BQ026760 AI824661 M85652 AA525961
highest scoring ESTs for EPHA3 :M83941 AA424266 AA452194 AA916335 AI741389 AK024352 AL039343 AU120483 AU137594 AV723897
Unigene Cluster for EPHA3: EPH receptor A3 Hs.123642 [show with all ESTs ] Unigene Representative Sequence: NM_005233 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000336596
Expression for EPHA3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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EPHA3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for EPHA3 1 / 2 / 3
8 probe-sets matching EPHA3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.123642 Expression variation in blood from EXPOLDB for EPHA3
UniProtKB/Swiss-Prot: EPHA3_HUMAN, P29320 Tissue specificity : Widely expressed. Highest level in placenta
Orthologs for EPHA3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for EPHA3 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for EPHA3 ENSEMBL Gene Tree for EPHA3 Paralogs for EPHA3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for EPHA3 gene EPHA5 2 EPHA6 2
SNPs/Variants for EPHA3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for EPHA3 (up to first 250kb)
Disorders & Mutations for EPHA3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 179611 UniProtKB/Swiss-Prot: EPHA3_HUMAN, P29320
Defects in EPHA3 may be a cause of colorectal cancer (CRC) [MIM:114500]
10/23 Novoseek disease relationships for EPHA3 gene (see all 23
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
parkinson disease
43.39
13
16672981 (1), 17000703 (1), 17707122 (1), 17362513 (1) (see all 12 )
breast cancer
34.92
14
12151336 (2), 18392133 (2), 16322251 (1), 18650427 (1) (see all 12 )
parkinsonism
33.82
9
16226715 (1), 19279012 (1), 17084972 (1), 17620882 (1) (see all 9 )
neurodegenerative diseases
28.60
1
18334630 (1)
tumors
25.93
20
10498621 (2), 10987298 (2), 15688034 (1), 16778166 (1) (see all 17 )
cancer
25.42
7
14760089 (1), 17611497 (1), 12560069 (1), 14530270 (1) (see all 7 )
cardiac hypertrophy
14.04
1
18054038 (1)
uveal melanoma
10.22
1
16845324 (1)
necrosis
6.29
3
15523691 (1), 19298660 (1), 12889600 (1)
retinoblastoma
3.96
1
12889598 (1)
About this table Human Genome Epidemiology Navigator: EPHA3 (1 document)
Medical News for EPHA3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for EPHA3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/414 PubMed articles for EPHA3 gene (see all 414
): Molecular cloning of HEK, the gene encoding a receptor tyrosine kinase expressed by human lymphoid tumor cell lines. (PubMed id 1311845) 2, 3, 4 Wicks I.P....Boyd A.W. (1992) Isolation and characterization of a novel receptor-type protein tyrosine kinase (hek) from a human pre-B cell line. (PubMed id 1737782) 2, 3, 4 Boyd A.W.... Busmanis I. (1992) Identification of a tumor-specific shared antigen derived from an Eph receptor and presented to CD4 T cells on HLA class II molecules. (PubMed id 10987298) 1, 3, 4 Chiari R....Coulie P.G. (2000) Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry. (PubMed id 17192257) 3, 4 Wissing J.... Daub H. (2007) An unappreciated role for RNA surveillance. (PubMed id 14759258) 3, 4 Hillman R.T.... Brenner S.E. (2004) The EphA3 receptor is expressed in a subset of rhabdomyosarcoma cell lines and suppresses cell adhesion and migration. (PubMed id 18814179) 1, 3 Clifford N....O'Connor R. (2008) EphA3 is induced by CD28 and IGF-1 and regulates cell adhesion. (PubMed id 14697337) 1, 3 Smith L.M....O'Connor R. (2004) Localization of a human receptor tyrosine kinase (ETK1) to chromosome region 3p11.2. (PubMed id 8188238) 1, 3 Wicks I.P....Sutherland G.R. (1994) Autoregulation by the juxtamembrane region of the human ephrin receptor tyrosine kinase A3 (EphA3). (PubMed id 18547520) 1, 3 Davis T.L....Dhe-Paganon S. (2008) Eph receptor-ligand interactions are necessary for guidance of retinal ganglion cell axons in vitro. (PubMed id 9751130) 1, 3 Ciossek T....Drescher U. (1998)
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Genome Databases showing EPHA3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing EPHA3
(According to HUGE )
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--
Specialized Databases showing EPHA3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for EPHA3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for EPHA3:
Antibodies & Assays for EPHA3  
Search Tocris compounds for EPHA3
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Aliases for EPHA3
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Expression for EPHA3
Function for EPHA3
Location for EPHA3
Medical News for EPHA3
Orthologs for EPHA3
Paralogs for EPHA3
Pathways/Interactions for EPHA3
Proteins for EPHA3
Publications for EPHA3
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Search Box for EPHA3
Services for EPHA3
Summaries for EPHA3
Technologies for EPHA3
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009