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Aliases for EPHA1-AS1 Gene

Subcategory (RNA class) for EPHA1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EPHA1-AS1 Gene

  • EPHA1 Antisense RNA 1 2 3 5
  • EPHA1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for EPHA1-AS1 Gene

Previous GeneCards Identifiers for EPHA1-AS1 Gene

  • GC07P143106
  • GC07P143408
  • GC07P143483

Summaries for EPHA1-AS1 Gene

GeneCards Summary for EPHA1-AS1 Gene

EPHA1-AS1 (EPHA1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EPHA1-AS1 Gene

Genomics for EPHA1-AS1 Gene

Regulatory Elements for EPHA1-AS1 Gene

Enhancers for EPHA1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G143413 1.1 FANTOM5 Ensembl 50.1 +6.1 6089 1.8 BCOR YBX3 ATF1 ARNT ZNF384 CEBPG ZBTB40 ZNF644 ZNF766 SMARCE1 EPHA1-AS1 TAS2R41 EPHA1 OR6V1 TAS2R62P
GH07G143378 2 FANTOM5 Ensembl ENCODE dbSUPER 24.9 -21.6 -21619 15.9 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A YBX1 ZNF2 ZBTB7B ZYX EPHA1-AS1 EPHA1 HINT1P1 CLCN1 OR2A1 FAM131B LOC100507507 TAS2R60 ARHGEF35
GH07G143429 0.8 Ensembl ENCODE 26 +22.7 22707 1.9 FOSL1 JUND GATA2 JUN ZSCAN4 CEBPB FOS EPHA1-AS1 LOC100507507 ZYX TAS2R62P EPHA1
GH07G143434 0.8 ENCODE 22.8 +27.5 27478 1.1 ATF1 MAX RAD21 RFX5 YY1 FOXK2 HNF4G PRDM10 CREM L3MBTL2 EPHA1-AS1 TAS2R62P EPHA1
GH07G143258 1.5 FANTOM5 Ensembl ENCODE 11.6 -148.5 -148545 2.2 FOXA2 YY1 TCF12 ZNF766 GATA2 CBX5 FOS SP3 CAVIN1 JUNB TMEM139 LOC105375545 CASP2 RN7SL535P EPHA1 EPHA1-AS1 FAM131B HINT1P1 CLCN1 ZYX
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around EPHA1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for EPHA1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000219373 987 401 CTCF REST ZEB2 RAD21 POLR2A SMC3 HNF4A HOMEZ HNRNPL

Genomic Location for EPHA1-AS1 Gene

Chromosome:
7
Start:
143,407,813 bp from pter
End:
143,523,449 bp from pter
Size:
115,637 bases
Orientation:
Plus strand

Genomic View for EPHA1-AS1 Gene

Genes around EPHA1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EPHA1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EPHA1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EPHA1-AS1 Gene

Proteins for EPHA1-AS1 Gene

Post-translational modifications for EPHA1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for EPHA1-AS1 Gene

Domains & Families for EPHA1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EPHA1-AS1 Gene

Function for EPHA1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EPHA1-AS1 Gene

Localization for EPHA1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EPHA1-AS1 Gene

Pathways & Interactions for EPHA1-AS1 Gene

SuperPathways for EPHA1-AS1 Gene

No Data Available

Interacting Proteins for EPHA1-AS1 Gene

Gene Ontology (GO) - Biological Process for EPHA1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EPHA1-AS1 Gene

Drugs & Compounds for EPHA1-AS1 Gene

No Compound Related Data Available

Transcripts for EPHA1-AS1 Gene

mRNA/cDNA for EPHA1-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EPHA1-AS1 Gene

EPHA1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EPHA1-AS1 Gene

No ASD Table

Relevant External Links for EPHA1-AS1 Gene

GeneLoc Exon Structure for
EPHA1-AS1
ECgene alternative splicing isoforms for
EPHA1-AS1

Expression for EPHA1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for EPHA1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for EPHA1-AS1 Gene

This gene is overexpressed in Whole Blood (x5.6) and Artery - Tibial (x4.8).

SOURCE GeneReport for Unigene cluster for EPHA1-AS1 Gene:

Hs.642649
genes like me logo Genes that share expression patterns with EPHA1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for EPHA1-AS1 Gene

Orthologs for EPHA1-AS1 Gene

Evolution for EPHA1-AS1 Gene

ENSEMBL:
Gene Tree for EPHA1-AS1 (if available)
TreeFam:
Gene Tree for EPHA1-AS1 (if available)

No data available for Orthologs for EPHA1-AS1 Gene

Paralogs for EPHA1-AS1 Gene

No data available for Paralogs for EPHA1-AS1 Gene

Variants for EPHA1-AS1 Gene

Sequence variations from dbSNP and Humsavar for EPHA1-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000019773 -- 143,421,712(+) CAGCT(A/T)GGAAT intron-variant
rs1000026806 -- 143,470,197(+) AATTT(C/T)ACATG intron-variant
rs1000038269 -- 143,423,065(+) TGCCA(A/C)ACTCC intron-variant
rs1000080174 -- 143,470,627(+) TGCTT(A/G)GGCTC intron-variant
rs1000087571 -- 143,484,205(+) CTTCA(C/T)TCTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EPHA1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv12n29 CNV gain+loss 16826518
dgv248n111 CNV duplication 26073780
dgv249n111 CNV duplication 26073780
dgv6699n100 CNV gain 25217958
dgv6700n100 CNV gain 25217958
dgv6701n100 CNV gain 25217958
dgv6702n100 CNV gain 25217958
dgv6703n100 CNV loss 25217958
dgv6704n100 CNV loss 25217958
dgv6705n100 CNV gain+loss 25217958
dgv6706n100 CNV loss 25217958
esv2422489 CNV duplication 17116639
esv2735281 CNV deletion 23290073
esv2759570 CNV gain+loss 17122850
esv29816 CNV gain+loss 19812545
esv3584556 CNV gain 24956385
esv3615304 CNV loss 21293372
esv3891218 CNV loss 25118596
nsv1151873 CNV duplication 26484159
nsv1161631 CNV duplication 26073780
nsv428188 CNV gain+loss 18775914
nsv442210 CNV gain 18776908
nsv608681 CNV loss 21841781
nsv608682 CNV gain 21841781
nsv8227 CNV gain+loss 18304495
nsv831171 CNV gain+loss 17160897

Relevant External Links for EPHA1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
EPHA1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for EPHA1-AS1 Gene

Disorders for EPHA1-AS1 Gene

Relevant External Links for EPHA1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EPHA1-AS1

No disorders were found for EPHA1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for EPHA1-AS1 Gene

Publications for EPHA1-AS1 Gene

  1. Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease. (PMID: 24162737) Lambert J.C. … Amouyel P. (Nat. Genet. 2013) 3 64
  2. Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease. (PMID: 21460841) Naj A.C. … Schellenberg G.D. (Nat. Genet. 2011) 3 64

Products for EPHA1-AS1 Gene

Sources for EPHA1-AS1 Gene

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