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Aliases & Descriptions for EPHA1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 2.7.10.1 3 | | EPH 1, 2, 3 | | EPHT 2, 3 | | EPHT1 2, 3, 5 | | EphA1 1 | | MGC163163 2 |
| | | Descriptions |
|---|
| EPH receptor A1 2 | | Tyrosine-protein kinase receptor EPH 2, 3 | | eph tyrosine kinase 1 2 | | ephrin receptor EphA1 2 | | ephrin type-A receptor 1 2 | | erythropoietin-producing hepatoma amplified sequence 2 | | oncogene EPH 2 | | soluble EPHA1 variant 1 2 | | soluble EPHA1 variant 2 2 |
|
| | Search outside databases for aliases for EPHA1 genePrevious GC identifers: GC07M141414 GC07M142482 GC07M142559 GC07M142605 |
Summaries for EPHA1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for EPHA1: This gene belongs to the ephrin receptor subfamily of the protein-tyrosine kinase family. EPH and EPH-related receptors have been implicated in mediating developmental events, particularly in the nervous system. Receptors in the EPH subfamily typically have a single kinase domain and an extracellular region containing a Cys-rich domain and 2 fibronectin type III repeats. The ephrin receptors are divided into 2 groups based on the similarity of their extracellular domain sequences and their affinities for binding ephrin-A and ephrin-B ligands. This gene is expressed in some human cancer cell lines and has been implicated in carcinogenesis. [provided by RefSeq] UniProtKB/Swiss-Prot: EPHA1_HUMAN, P21709Function: Receptor for members of the ephrin-A family. Binds with a low affinity to ephrin-A1Gene Wiki entry for EPHA1 (EPH_receptor_A1) |
Genomic Location for EPHA1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EPHA1 gene 
Entrez Gene cytogenetic band: 7q34 Ensembl cytogenetic band: 7q35 HGNC cytogenetic band: 7q32-q36EPHA1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M142798:
(about GC identifiers)
Start:
|
142,798,327 bp from pter |
End:
|
142,816,107 bp from pter |
Size:
|
17,781 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 142,490,337-142,508,118 |
RefSeq DNA sequence:- NC_000007.12 NT_007914.14 NT_079596.2
| Proteins for EPHA1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: EPHA1_HUMAN, P21709 (See
protein sequence)Recommended Name: Ephrin type-A receptor 1 precursor Size: 976 amino acids; 108067 Da
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structure from and Proteopedia :2K1K (3D)
 2K1L (3D)
 
Secondary accessions: Q15405Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005223.4
ENSEMBL proteins: ENSP00000275815
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: EPHA1 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for EPHA1: Assays for EPHA1: | Protein
Domains/ Families for EPHA1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P21709
ProtoNet protein and cluster: P21709 2 Blocks protein families: IPB001660 Sterile alpha motif SAM IPB008266 Tyrosine protein kinase
UniProtKB/Swiss-Prot: EPHA1_HUMAN, P21709Similarity: Belongs to the protein kinase superfamily. Tyr protein kinase family. Ephrin receptor subfamilySimilarity: Contains 2 fibronectin type-III domainsSimilarity: Contains 1 protein kinase domainSimilarity: Contains 1 SAM (sterile alpha motif) domain | Gene Function for EPHA1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005232
Applied Biosystems Silencer® siRNAs for EPHA1
Sigma-Aldrich siRNA and siRNA Panels for EPHA1  Sigma-Aldrich shRNA Panels and shRNA for EPHA1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005232                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005232                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005232 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005232
UniProtKB/Swiss-Prot: EPHA1_HUMAN, P21709Function: Receptor for members of the ephrin-A family. Binds with a low affinity to ephrin-A1Catalytic activity: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme Number (IUBMB): EC 2.7.10.1 Genatlas biochemistry entry for EPHA1:EPH-related tyrosine kinase receptor 1,binding ephrin A1,expressed in projecting neurons and their target fields,involved in short-range contact-mediated axonal guidance6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Epha1):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for EPHA1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for EPHA1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for EPHA1 
5/36 Interacting proteins for EPHA1 (ENSP000002758153) via UniProtKB, MINT, and/or STRING (see all 36
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006468 | protein amino acid phosphorylation |
IEA | -- | | GO:0007165 | signal transduction |
TAS | 2825356 | | GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway |
IEA | -- | About this table
|
Drugs & Compounds for EPHA1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for EPHA1 4 Novoseek chemical compound relationships for EPHA1 gene
About this table
|
Transcripts for EPHA1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005232
Sigma-Aldrich siRNA and siRNA Panels for EPHA1  Sigma-Aldrich shRNA Panels and shRNA for EPHA1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005232 REFSEQ mRNAs for EPHA1 gene: NM_005232.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005232               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005232                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005232                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005232  Additional cDNA sequence: AK290351.1 AK313263.1 BC130291.1 BC144156.1 EU826604.1 EU826605.1 M18391.1 Z27409.1 7 DOTS entries: DT.91721993 DT.100045554 DT.100664350 DT.121640668 DT.100729784 DT.91827212 DT.91721988 24/74 AceView cDNA sequences (see all 74
):BM741169 BM741187 W31887 BM710193 BM756676 AI565251 BX090074 BM756648 AW630929 BM671614 AI003571 BI489574 NM_005232 BM742869 BM853008 AA323650 CA433359 AU131228 BM975549 AA843803 BP355458 BX496012 AA777651 C00200
highest scoring ESTs for EPHA1:M18391 AU131228 AA158380 AA203510 AA682887 AA772015 AA777651 AA843802 AA843803 AA843957 Unigene Cluster for EPHA1: EPH receptor A1 Hs.89839 [show with all ESTs]Unigene Representative Sequence: M18391
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000275815
|
Expression for EPHA1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EPHA1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EPHA1
1 / 2 / 3 3 probe-sets matching EPHA1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AGGGCTGCAG
SOURCE GeneReport for Unigene cluster: Hs.89839
Expression variation in blood from EXPOLDB for EPHA1 UniProtKB/Swiss-Prot: EPHA1_HUMAN, P21709Tissue specificity: Overexpressed in several carcinomas |
Orthologs for EPHA1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for EPHA1 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for EPHA1
ENSEMBL Gene Tree for EPHA1 | Paralogs for EPHA1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EPHA1 gene
- EPHA22
|
SNPs/Variants for EPHA1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for EPHA1 (up to first 250kb)
|
Disorders & Mutations for EPHA1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 179610
10/13 Novoseek disease relationships for EPHA1 gene (see all 13
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| neovascularization |
42.83 |
4 |
17260020 (1), 11146556 (1), 12351647 (1), 17049832 (1) |
| cancer |
30.08 |
13 |
14767510 (1), 15892616 (1), 16516143 (1), 18797510 (1) (see all 13) |
| glioblastoma |
28.99 |
1 |
10064801 (1) |
| tumors |
28.25 |
23 |
11146556 (2), 16862074 (2), 18366728 (2), 19144211 (2) (see all 12) |
| metastasis |
15.00 |
5 |
17260020 (1), 18797510 (1), 15561600 (1), 19144211 (1) |
| glioma |
14.41 |
1 |
15126357 (1) |
| colorectal cancer |
7.38 |
2 |
19277044 (2) |
| breast carcinoma |
3.09 |
1 |
12209731 (1) |
| melanoma |
0.00 |
2 |
12209731 (1), 11870224 (1) |
| carcinoma |
0.00 |
2 |
19144211 (1) |
About this table
Tumor Gene Database: EPHA1
|
Medical News for EPHA1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for EPHA1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/210 PubMed articles for EPHA1 gene (see all 210
):- Unified nomenclature for Eph family receptors and their ligands, the ephrins. Eph Nomenclature Committee. (PubMed id 9267020)1, 2, 3 (1997)
- A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)3, 4 Beausoleil S.A.... Gygi S.P. (2006)
- Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. (PubMed id 15951569)3, 4 Zhang Y.... White F.M. (2005)
- The DNA sequence of human chromosome 7. (PubMed id 12853948)3, 4 Hillier L.W.... Wilson R.K. (2003)
- Genomic structure of the EPHA1 receptor tyrosine kinase gene. (PubMed id 10369740)3, 4 Owshalimpur D. and Kelley M.J. (1999)
- A novel putative tyrosine kinase receptor encoded by the eph gene. (PubMed id 2825356)3, 4 Hirai H.... Takaku F. (1987)
- Epigenetic silencing of EphA1 expression in colorectal cancer is correlated with poor survival. (PubMed id 19277044)1, 3 Herath N.I....Boyd A.W. (2009)
- Expression profile of Eph receptors and ephrin ligands in human skin and downregulation of EphA1 in nonmelanoma skin cancer. (PubMed id 16862074)1, 3 Hafner C....Vogt T. (2006)
- EphA1 interacts with integrin-linked kinase and regulates cell morphology and motility. (PubMed id 19118217)1, 3 Yamazaki T....Maru Y. (2009)
- Over-expression of Eph and ephrin genes in advanced ovarian cancer: ephrin gene expression correlates with shortened survival. (PubMed id 16737551)1, 3 Herath N.I....Boyd A.W. (2006)
|
Search for EPHA1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing EPHA1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EPHA1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing EPHA1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for EPHA1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EPHA1:

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Incremental update: 13 Oct 2009
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