 |
 | Services
| |
 |
Aliases & Descriptions for EPB41L3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 4.1B 1, 2, 3 | | DAL-1 2, 3 | | DAL1 1, 2, 3, 5 | | FLJ37633 2 | | KIAA0987 1, 2, 3 |
| | | Descriptions |
|---|
Differentially expressed in adenocarcinoma of the lung protein 1 3 | | differentially expressed in adenocarcinoma of the lung 2 | | erythrocyte membrane protein band 4.1-like 3 2 |
|
| | Search outside databases for aliases for EPB41L3 genePrevious GC identifers: GC18P005437 GC18M005456 |
Summaries for EPB41L3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: E41L3_HUMAN, Q9Y2J2Function: Critical growth regulator in the pathogenesis of meningiomasGene Wiki entry for EPB41L3 |
Genomic Location for EPB41L3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the EPB41L3 gene 
Entrez Gene cytogenetic band: 18p11.32 Ensembl cytogenetic band: 18p11.31 HGNC cytogenetic band: 18p11.32EPB41L3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 18 GeneLoc Exon Structure GeneLoc location for GC18M005382:
(about GC identifiers)
Start:
|
5,382,388 bp from pter |
End:
|
5,620,640 bp from pter |
Size:
|
238,253 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000018.8 NT_010859.14
| Proteins for EPB41L3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: E41L3_HUMAN, Q9Y2J2 (See
protein sequence)Recommended Name: Band 4.1-like protein 3 Size: 1087 amino acids; 120678 Da
Subunit: Interacts with CADM1
Subcellular location: Cytoplasm, cytoskeleton (By similarity)
Sequence caution: Sequence=AAC79806.1; Type=Frameshift; Positions=29, 59;
PDB structure from and Proteopedia :2HE7 (3D)
 3BIN (3D)
 
Secondary accessions: O95713 Q9BRP5Alternative splicing: 3 isoforms: Q9Y2J2-1 Q9Y2J2-2 Q9Y2J2-3 (Additional isoforms seem to exist)Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_036439.2
ENSEMBL proteins: ENSP00000382981 ENSP00000343158 ENSP00000341138
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for EPB41L3: Assays for EPB41L3: | Protein
Domains/ Families for EPB41L3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9Y2J2
ProtoNet protein and cluster: Q9Y2J2 2 Blocks protein families: IPB000299 Band 4.1 domain IPB007477 SAB
UniProtKB/Swiss-Prot: E41L3_HUMAN, Q9Y2J2Similarity: Contains 1 FERM domain | Gene Function for EPB41L3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_012307
Applied Biosystems Silencer® siRNAs for EPB41L3
Sigma-Aldrich siRNA for EPB41L3  Sigma-Aldrich shRNA for EPB41L3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_012307                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_012307                                  untagged cDNA clone in CMV expression vector: NM_012307 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_012307
UniProtKB/Swiss-Prot: E41L3_HUMAN, Q9Y2J2Function: Critical growth regulator in the pathogenesis of meningiomasGenatlas biochemistry entry for EPB41L3:erythrocyte surface protein 4.1-like 3,expressed in the brain3 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Epb4.1l3):
2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003779 | actin binding |
IEA | -- | | GO:0005198 | structural molecule activity |
IEA | -- | About this table | Pathways & Interactions for EPB41L3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for EPB41L3 
5/22 Interacting proteins for EPB41L3 (Q9Y2J21, 2 ENSP000003431583) via UniProtKB, MINT, and/or STRING (see all 22
)| Interactant | Interaction Details |
|---|
| GeneCard | External ID(s) |
|---|
| YWHAB | P319461, 2, ENSP000003619303 | EBI-310986, EBI-359815 MINT-50963 EBI-310986, EBI-359815 MINT-50963 STRING (score=.905) | | YWHAG | P619811, 2, ENSP000003063303 | EBI-310986, EBI-359832 MINT-50838 EBI-310986, EBI-359832 MINT-50838 STRING (score=.735) | | YWHAZ | P631041, 2, ENSP000003095033 | EBI-310986, EBI-347088 MINT-51018 EBI-310986, EBI-347088 MINT-51018 STRING (score=.735) | | ABL1 | P005191 | EBI-310986, EBI-375543 | | CRK | P461081 | EBI-310986, EBI-886 | About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008150 | biological_process |
ND | -- | | GO:0030866 | cortical actin cytoskeleton organization |
IEA | -- | About this table
|
Drugs & Compounds for EPB41L3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for EPB41L3 2 Novoseek chemical compound relationships for EPB41L3 gene
About this table
|
Transcripts for EPB41L3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_012307
Sigma-Aldrich siRNA for EPB41L3  Sigma-Aldrich shRNA for EPB41L3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_012307 REFSEQ mRNAs for EPB41L3 gene: NM_012307.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_012307               OriGene GFP tagged cDNA clone in CMV expression vector: NM_012307                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_012307                                  untagged cDNA clone in CMV expression vector: NM_012307  Additional cDNA sequence: AB023204.1 AF069072.1 AF515797.1 AK090875.1 AK094952.1 AK128531.1 AK292583.1 AK294610.1 AK294690.1 AK295453.1 AK297406.1 AK303679.1 AK307751.1 AK307904.1 AK314438.1 AL832598.2 BC006141.1 BC008377.1 BC144531.1 21 DOTS entries: DT.100811666 DT.100680879 DT.448097 DT.102839096 DT.91651680 DT.100811665 DT.100037099 DT.100760852 DT.121103773 DT.121103834 DT.95255086 DT.100746176 DT.91756598 DT.91756605 DT.97801097 DT.100675153 DT.102839110 DT.121103786 DT.121103787 DT.121103845 DT.86853288 24/188 AceView cDNA sequences (see all 188
):NM_012307 CA392588 AA961368 AA137177 CA389788 Z39205 AI004767 AA918413 BU170106 AI089001 AA946867 CA397120 BQ723106 BQ718050 AA926990 AW949363 Z43119 AA969754 BE790193 BQ721327 BG164458 AB023204 AW022746 AA757612
highest scoring ESTs for EPB41L3:AB023204 AF069072 BC006141 BE798638 AA135872 AA137177 AA173170 AA297012 AA302629 AA307056 Unigene Cluster for EPB41L3: Erythrocyte membrane protein band 4.1-like 3 Hs.213394 [show with all ESTs]Unigene Representative Sequence: AL832598
GeneLoc Exon Structure
5/18 Alternative Splicing Database (ASD) splice patterns (SP) for EPB41L3 (see all 18
)
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15a | · | 15b | · | 15c | · | 15d | · | 15e | ^ | 16 | ^ | 17a | · | 17b | ^ | 18 | ^ | |
| SP1: | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | |
| SP3: | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | |
| SP5: | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 19a | · | 19b | · | 19c | ^ | 20a | · | 20b | · | 20c | ^ | 21 | ^ | 22a | · | 22b | ^ | 23a | · | 23b | · | 23c | ^ | 24a | · | 24b | ^ | 25a | · | 25b | ^ | 26 | ^ | 27 | ^ | 28a | · | 28b | ^ | 29a | · | 29b | · | 29c | · | 29d | · | 29e | |
| SP1: | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | - |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for EPB41L3
3 Ensembl transcripts including schematic representations: ENST00000400111
ENST00000341928
ENST00000342933
|
Expression for EPB41L3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| EPB41L3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for EPB41L3
1 / 2 / 3 8 probe-sets matching EPB41L3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTGAATGTAT
SOURCE GeneReport for Unigene cluster: Hs.213394
Expression variation in blood from EXPOLDB for EPB41L3 UniProtKB/Swiss-Prot: E41L3_HUMAN, Q9Y2J2Tissue specificity: Expressed at high levels in brain, with lower levels in kidney, intestine, and testis |
Orthologs for EPB41L3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for EPB41L3 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for EPB41L3
ENSEMBL Gene Tree for EPB41L3 | Paralogs for EPB41L3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for EPB41L3 gene
- EPB412 EPB41L22
|
SNPs/Variants for EPB41L3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for EPB41L3 (up to first 250kb)
|
Disorders & Mutations for EPB41L3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 605331
10/13 Novoseek disease relationships for EPB41L3 gene (see all 13
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| meningioma |
76.07 |
34 |
10888600 (4), 15116094 (3), 15688033 (3), 16707455 (3) (see all 12) |
| neurofibromatosis type 2 |
74.63 |
3 |
15674477 (1), 15542977 (1), 15535129 (1) |
| benign meningioma |
69.12 |
1 |
16707455 (1) |
| carcinoma non-small cell lung |
57.52 |
4 |
9892180 (2), 15334060 (1), 10888600 (1) |
| adenocarcinoma |
51.59 |
15 |
15837747 (2), 15116094 (1), 17415786 (1), 18554153 (1) (see all 11) |
| lung tumor |
45.11 |
3 |
12234973 (2), 15837747 (1) |
| tumors |
41.30 |
40 |
11300722 (4), 15837747 (3), 18554153 (2), 12478663 (2) (see all 20) |
| brain tumors |
41.28 |
4 |
16420693 (1), 10888600 (1) |
| neoplastic transformation |
41.14 |
1 |
15517334 (1) |
| cancer lung |
36.25 |
13 |
15837747 (3), 17415786 (2), 12234973 (2), 16205641 (2) (see all 6) |
About this table
|
Medical News for EPB41L3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for EPB41L3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/56 PubMed articles for EPB41L3 gene (see all 56
):- A novel member of the NF2/ERM/4.1 superfamily with growth suppressing properties in lung cancer. (PubMed id 9892180)1, 2, 3, 4 Tran Y.K....Newsham I.F. (1999)
- Direct association of TSLC1 and DAL-1, two distinct tumor suppressor proteins in lung cancer. (PubMed id 12234973)1, 3, 4 Yageta M.... Murakami Y. (2002)
- A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)3, 4 Beausoleil S.A.... Gygi S.P. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10231032)3, 4 Nagase T....Ohara O. (1999)
- Four paralogous protein 4.1 genes map to distinct chromosomes in mouse and human. (PubMed id 9828140)2, 3 Peters L.L....Conboy J.G. (1998)
- Downregulation of TSLC1 and DAL-1 expression occurs frequently in breast cancer. (PubMed id 17260099)1, 3 Heller G....Zochbauer-Muller S. (2007)
- Promoter methylation of DAL-1/4.1B predicts poor prognosis in non-small cell lung cancer. (PubMed id 15837747)1, 3 Kikuchi S....Murakami Y. (2005)
- Immunolocalization of protein 4.1B/DAL-1 during neoplastic transformation of mouse and human intestinal epithelium. (PubMed id 15517334)1, 3 Ohno N....Ohno S. (2004)
- Disruption of 14-3-3 binding does not impair Protein 4.1B growth suppression. (PubMed id 15116094)1, 3 Robb V.A....Gutmann D.H. (2004)
|
Search for EPB41L3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing EPB41L3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing EPB41L3
(According to HUGE)
About This Section
| |
Specialized Databases showing EPB41L3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for EPB41L3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for EPB41L3:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for EPB41L3 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|