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Aliases for EOGT Gene

Aliases for EOGT Gene

  • EGF Domain-Specific O-Linked N-Acetylglucosamine (GlcNAc) Transferase 2 3
  • C3orf64 3 4 6
  • EOGT1 3 4 6
  • Extracellular O-Linked N-Acetylglucosamine Transferase 3 4
  • AER61 Glycosyltransferase 2 3
  • AER61 3 4
  • AOS4 3 6
  • EGF Domain-Specific O-Linked N-Acetylglucosamine Transferase 3
  • Chromosome 3 Open Reading Frame 64 2
  • EGF-O-GlcNAc Transferase 3
  • EC 2.4.1.255 4

External Ids for EOGT Gene

Previous HGNC Symbols for EOGT Gene

  • C3orf64

Previous GeneCards Identifiers for EOGT Gene

  • GC03M069025

Summaries for EOGT Gene

GeneCards Summary for EOGT Gene

EOGT (EGF Domain-Specific O-Linked N-Acetylglucosamine (GlcNAc) Transferase) is a Protein Coding gene. Diseases associated with EOGT include adams-oliver syndrome 4 and adams-oliver syndrome 3. Among its related pathways are Other types of O-glycan biosynthesis. GO annotations related to this gene include protein N-acetylglucosaminyltransferase activity. An important paralog of this gene is POMGNT2.

UniProtKB/Swiss-Prot for EOGT Gene

  • Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in extracellular proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Specifically glycosylates the Thr residue located between the fifth and sixth conserved cysteines of folded EGF-like domains.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EOGT Gene

Genomics for EOGT Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for EOGT Gene

Start:
68,975,212 bp from pter
End:
69,013,961 bp from pter
Size:
38,750 bases
Orientation:
Minus strand

Genomic View for EOGT Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for EOGT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EOGT Gene

No data available for Regulatory Elements for EOGT Gene

Proteins for EOGT Gene

  • Protein details for EOGT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5NDL2-EOGT_HUMAN
    Recommended name:
    EGF domain-specific O-linked N-acetylglucosamine transferase
    Protein Accession:
    Q5NDL2
    Secondary Accessions:
    • A8K2U1
    • B4DFH5
    • L7X1M5
    • Q6MZY0
    • Q6P985
    • Q6ZTV0

    Protein attributes for EOGT Gene

    Size:
    527 amino acids
    Molecular mass:
    62011 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAF83045.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAG57436.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for EOGT Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for EOGT Gene

Proteomics data for EOGT Gene at MOPED

Post-translational modifications for EOGT Gene

  • Glycosylation at Asn354
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for EOGT Gene

Domains for EOGT Gene

Protein Domains for EOGT Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5NDL2

UniProtKB/Swiss-Prot:

EOGT_HUMAN :
  • Q5NDL2
Family:
  • Belongs to the glycosyltransferase 61 family.
genes like me logo Genes that share domains with EOGT: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for EOGT Gene

Function for EOGT Gene

Molecular function for EOGT Gene

UniProtKB/Swiss-Prot CatalyticActivity: UDP-N-acetyl-D-glucosamine + [protein]-L-serine = UDP + [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine
UniProtKB/Swiss-Prot CatalyticActivity: UDP-N-acetyl-D-glucosamine + [protein]-L-threonine = UDP + [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-threonine
UniProtKB/Swiss-Prot Function: Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in extracellular proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Specifically glycosylates the Thr residue located between the fifth and sixth conserved cysteines of folded EGF-like domains.

Enzyme Numbers (IUBMB) for EOGT Gene

Gene Ontology (GO) - Molecular Function for EOGT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016262 protein N-acetylglucosaminyltransferase activity ISS --
GO:0016757 transferase activity, transferring glycosyl groups --
genes like me logo Genes that share ontologies with EOGT: view

Phenotypes for EOGT Gene

genes like me logo Genes that share phenotypes with EOGT: view

Animal Model Products

CRISPR Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for EOGT Gene

Localization for EOGT Gene

Subcellular locations from UniProtKB/Swiss-Prot for EOGT Gene

Endoplasmic reticulum lumen.

Gene Ontology (GO) - Cellular Components for EOGT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum --
GO:0005788 endoplasmic reticulum lumen IEA --
genes like me logo Genes that share ontologies with EOGT: view

No data available for Subcellular locations from COMPARTMENTS for EOGT Gene

Pathways for EOGT Gene

genes like me logo Genes that share pathways with EOGT: view

Pathways by source for EOGT Gene

1 KEGG pathway for EOGT Gene

Interacting Proteins for EOGT Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000295571%0d%0a9606.ENSP00000362824%0d%0a9606.ENSP00000376076%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000295571 for EOGT Gene via STRING

Gene Ontology (GO) - Biological Process for EOGT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006493 protein O-linked glycosylation ISS --
GO:0008152 metabolic process --
genes like me logo Genes that share ontologies with EOGT: view

Transcripts for EOGT Gene

Unigene Clusters for EOGT Gene

EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for EOGT

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for EOGT Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b · 16c ^ 17a · 17b ^ 18 ^ 19 ^
SP1: - - - -
SP2: - - - - - - -
SP3: - - -
SP4: - - -
SP5: - -
SP6:

ExUns: 20
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:

Relevant External Links for EOGT Gene

GeneLoc Exon Structure for
EOGT
ECgene alternative splicing isoforms for
EOGT

Expression for EOGT Gene

mRNA expression in normal human tissues for EOGT Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for EOGT Gene

SOURCE GeneReport for Unigene cluster for EOGT Gene Hs.518059

genes like me logo Genes that share expressions with EOGT: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for EOGT Gene

Orthologs for EOGT Gene

This gene was present in the common ancestor of animals.

Orthologs for EOGT Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia EOGT 35
  • 99.75 (n)
  • 99.62 (a)
EOGT 36
  • 84 (a)
OneToOne
cow
(Bos Taurus)
Mammalia EOGT 35
  • 87.67 (n)
  • 91.46 (a)
EOGT 36
  • 76 (a)
OneToOne
dog
(Canis familiaris)
Mammalia EOGT 35
  • 89.86 (n)
  • 93.8 (a)
EOGT 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Eogt 35
  • 84.82 (n)
  • 87.86 (a)
Eogt 16
Eogt 36
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia EOGT 36
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia EOGT 36
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Eogt 35
  • 84.5 (n)
  • 86.91 (a)
chicken
(Gallus gallus)
Aves C3ORF64 35
  • 74.58 (n)
  • 78.54 (a)
C3ORF64 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia EOGT 36
  • 50 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.7160 35
tropical clawed frog
(Silurana tropicalis)
Amphibia eogt 35
  • 67.63 (n)
  • 70.02 (a)
zebrafish
(Danio rerio)
Actinopterygii eogt 36
  • 53 (a)
OneToOne
LOC798087 35
  • 64.74 (n)
  • 66.28 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009279 35
  • 54.84 (n)
  • 48.55 (a)
fruit fly
(Drosophila melanogaster)
Insecta Eogt 35
  • 53.32 (n)
  • 50.9 (a)
Eogt 36
  • 37 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea CELE_H12D21.10 35
  • 51.99 (n)
  • 44.44 (a)
H12D21.10 36
  • 32 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 34 (a)
OneToMany
-- 36
  • 33 (a)
OneToMany
Species with no ortholog for EOGT:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for EOGT Gene

ENSEMBL:
Gene Tree for EOGT (if available)
TreeFam:
Gene Tree for EOGT (if available)

Paralogs for EOGT Gene

Paralogs for EOGT Gene

genes like me logo Genes that share paralogs with EOGT: view

Variants for EOGT Gene

Sequence variations from dbSNP and Humsavar for EOGT Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs937860 -- 69,011,611(+) AAAAA(A/C/G)AAAGA intron-variant
rs1270444 -- 69,014,668(+) AGCAA(A/G)AACAT upstream-variant-2KB
rs1438183 -- 68,999,964(-) GATTA(C/T)AGGTG intron-variant
rs1818287 -- 68,981,848(+) CAAAC(A/G)TTTGA intron-variant
rs1818288 -- 68,981,955(+) AGGCC(A/G)GAGTG intron-variant

Relevant External Links for EOGT Gene

HapMap Linkage Disequilibrium report
EOGT
Human Gene Mutation Database (HGMD)
EOGT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for EOGT Gene

Disorders for EOGT Gene

MalaCards: The human disease database

MalaCards: The human disease database. (4) Diseases for EOGT Gene including...

Search for EOGT Gene in MalaCards »

(1) OMIM Diseases for EOGT Gene (614789)

UniProtKB/Swiss-Prot

EOGT_HUMAN
  • Adams-Oliver syndrome 4 (AOS4) [MIM:615297]: A form of Adams-Oliver syndrome, a disorder characterized by the congenital absence of skin (aplasia cutis congenita) in combination with transverse limb defects. Aplasia cutis congenita can be located anywhere on the body, but in the vast majority of the cases, it is present on the posterior parietal region where it is often associated with an underlying defect of the parietal bones. Limb abnormalities are typically limb truncation defects affecting the distal phalanges or entire digits (true ectrodactyly). Only rarely, metatarsals/metacarpals or more proximal limb structures are also affected. Apart from transverse limb defects, syndactyly, most commonly of second and third toes, can also be observed. The clinical features are highly variable and can also include cardiovascular malformations, brain abnormalities and vascular defects such as cutis marmorata and dilated scalp veins. {ECO:0000269 PubMed:23522784}. Note=The disease is caused by mutations affecting the gene represented in this entry.
genes like me logo Genes that share disorders with EOGT: view

Publications for EOGT Gene

  1. O-linked-N-acetylglucosamine modification of mammalian Notch receptors by an atypical O-GlcNAc transferase Eogt1. (PMID: 22310717) Sakaidani Y. … Okajima T. (Biochem. Biophys. Res. Commun. 2012) 2 3
  2. Mutations in EOGT confirm the genetic heterogeneity of autosomal-recessive Adams-Oliver syndrome. (PMID: 23522784) Shaheen R. … Alkuraya F.S. (Am. J. Hum. Genet. 2013) 3 4
  3. The EGF Repeat-Specific O-GlcNAc-Transferase Eogt Interacts with Notch Signaling and Pyrimidine Metabolism Pathways in Drosophila. (PMID: 23671640) Muller R. … Stanley P. (PLoS ONE 2013) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for EOGT Gene

Sources for EOGT Gene

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