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Aliases for ENSG00000271980 Gene

Subcategory (RNA class) for ENSG00000271980 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for ENSG00000271980 Gene

  • CTD-2256P15.4 5

External Ids for ENSG00000271980 Gene

ORGUL Members for ENSG00000271980 Gene

Summaries for ENSG00000271980 Gene

GeneCards Summary for ENSG00000271980 Gene

ENSG00000271980 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for ENSG00000271980 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ENSG00000271980 Gene

Genomics for ENSG00000271980 Gene

Regulatory Elements for ENSG00000271980 Gene

Enhancers for ENSG00000271980 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G010288 1.5 Ensembl ENCODE dbSUPER 16.4 -22.4 -22402 3.0 PKNOX1 SIN3A FEZF1 YY1 ZNF121 GLIS2 FOS KLF7 ZNF263 YY2 ENSG00000271980 CMBL FAM173B CCT5 GC05M010293 ENSG00000252341 ENSG00000271715
GH05G010283 1.2 Ensembl ENCODE 17.2 -17.0 -16989 0.5 HDGF ATF1 ARID4B SIN3A DMAP1 ZNF48 YY1 CBX5 ZNF143 KLF13 ENSG00000271980 GC05M010293 ENSG00000252341 ENSG00000271715
GH05G010300 1.6 Ensembl ENCODE dbSUPER 9 -35.5 -35506 3.3 PKNOX1 CREB3L1 ARNT SIN3A YY1 ZNF766 CBX5 KLF13 SMARCB1 ZNF592 ENSG00000271980 CMBL GC05M010293 ENSG00000252341
GH05G010248 1.4 ENCODE dbSUPER 10.2 +16.8 16786 4.1 MLX CREB3L1 ZFP64 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 CCT5 MARCH6 CMBL ENSG00000271980 ROPN1L ROPN1L-AS1 FAM173B GC05M010252
GH05G010304 1.7 Ensembl ENCODE dbSUPER 5.8 -41.1 -41055 6.6 CREB3L1 DMAP1 YY1 ZNF263 SP3 SSRP1 ZNF610 ZNF585B GLIS1 NBN MARCH6 CMBL ROPN1L-AS1 ROPN1L FAM173B CCT5 ENSG00000271980 LOC105374651
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ENSG00000271980 on UCSC Golden Path with GeneCards custom track

Genomic Location for ENSG00000271980 Gene

Chromosome:
5
Start:
10,264,597 bp from pter
End:
10,267,146 bp from pter
Size:
2,550 bases
Orientation:
Minus strand

Genomic View for ENSG00000271980 Gene

Genes around ENSG00000271980 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000271980 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000271980 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for ENSG00000271980 Gene

ORGUL Member Location for ENSG00000271980 gene

No data available for RefSeq DNA sequence for ENSG00000271980 Gene

Proteins for ENSG00000271980 Gene

Post-translational modifications for ENSG00000271980 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000271980 Gene

Domains & Families for ENSG00000271980 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000271980 Gene

Function for ENSG00000271980 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000271980 Gene

Localization for ENSG00000271980 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ENSG00000271980 Gene

Pathways & Interactions for ENSG00000271980 Gene

SuperPathways for ENSG00000271980 Gene

No Data Available

Interacting Proteins for ENSG00000271980 Gene

Gene Ontology (GO) - Biological Process for ENSG00000271980 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000271980 Gene

Drugs & Compounds for ENSG00000271980 Gene

No Compound Related Data Available

Transcripts for ENSG00000271980 Gene

mRNA/cDNA for ENSG00000271980 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000271980 Gene

No ASD Table

Relevant External Links for ENSG00000271980 Gene

GeneLoc Exon Structure for
ENSG00000271980

Expression for ENSG00000271980 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000271980 Gene

genes like me logo Genes that share expression patterns with ENSG00000271980: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000271980 Gene

Orthologs for ENSG00000271980 Gene

Evolution for ENSG00000271980 Gene

ENSEMBL:
Gene Tree for ENSG00000271980 (if available)
TreeFam:
Gene Tree for ENSG00000271980 (if available)

No data available for Orthologs for ENSG00000271980 Gene

Paralogs for ENSG00000271980 Gene

No data available for Paralogs for ENSG00000271980 Gene

Variants for ENSG00000271980 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for ENSG00000271980 Gene

Disorders for ENSG00000271980 Gene

No disorders were found for ENSG00000271980 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000271980 Gene

Publications for ENSG00000271980 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) . … Gojobori T. (Nucleic Acids Res. 2008) 1
  2. Identification and characterization of human non-coding RNAs with tissue-specific expression. (PMID: 17451645) Sasaki Y.T. … Hirose T. (Biochem. Biophys. Res. Commun. 2007) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  4. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T. … Sugano S. (PLoS Biol. 2004) 1

Products for ENSG00000271980 Gene

Sources for ENSG00000271980 Gene

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