Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ENSG00000252727 Gene

Subcategory (RNA class) for ENSG00000252727 Gene

scaRNA

Aliases for ENSG00000252727 Gene

  • Small Cajal Body Specific RNA 11 5
  • SCARNA11 5

External Ids for ENSG00000252727 Gene

ORGUL Members for ENSG00000252727 Gene

Previous GeneCards Identifiers for ENSG00000252727 Gene

  • GC12P008751

Summaries for ENSG00000252727 Gene

GeneCards Summary for ENSG00000252727 Gene

ENSG00000252727 is an Uncategorized gene, and is affiliated with the scaRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ENSG00000252727 Gene

Genomics for ENSG00000252727 Gene

Regulatory Elements for ENSG00000252727 Gene

Enhancers for ENSG00000252727 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G008562 0.4 ENCODE 11.8 -35.0 -35020 0.1 CTCF ENSG00000252727 RNU6-275P LOC105369645 CLEC4E
GH12G008560 0.4 ENCODE 11.8 -36.3 -36282 1.0 ZNF316 EMSY ENSG00000252727 RNU6-275P ENSG00000255801 LOC105369645 CLEC4E
GH12G008610 1.2 FANTOM5 ENCODE 0.4 +13.7 13748 1.3 HDGF TBP PKNOX1 TBL1XR1 ZSCAN4 WRNIP1 SIN3A BMI1 TCF12 ZNF766 CLEC4E AICDA ENSG00000252727
GH12G008609 1 Ensembl ENCODE 0.4 +11.9 11892 0.8 CTCF WRNIP1 BMI1 RAD21 CBX5 POLR2A EED SCRT2 ZNF143 SMC3 CLEC4E A2ML1-AS2 A2ML1 KLRB1 AICDA ENSG00000252727
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ENSG00000252727 on UCSC Golden Path with GeneCards custom track

Genomic Location for ENSG00000252727 Gene

Chromosome:
12
Start:
8,597,509 bp from pter
End:
8,597,640 bp from pter
Size:
132 bases
Orientation:
Plus strand

Genomic View for ENSG00000252727 Gene

Genes around ENSG00000252727 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ENSG00000252727 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ENSG00000252727 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ENSG00000252727 Gene

Proteins for ENSG00000252727 Gene

Post-translational modifications for ENSG00000252727 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ENSG00000252727 Gene

Domains & Families for ENSG00000252727 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ENSG00000252727 Gene

Function for ENSG00000252727 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ENSG00000252727 Gene

Localization for ENSG00000252727 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ENSG00000252727 Gene

Pathways & Interactions for ENSG00000252727 Gene

SuperPathways for ENSG00000252727 Gene

No Data Available

Interacting Proteins for ENSG00000252727 Gene

Gene Ontology (GO) - Biological Process for ENSG00000252727 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ENSG00000252727 Gene

Drugs & Compounds for ENSG00000252727 Gene

No Compound Related Data Available

Transcripts for ENSG00000252727 Gene

mRNA/cDNA for ENSG00000252727 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ENSG00000252727 Gene

No ASD Table

Relevant External Links for ENSG00000252727 Gene

GeneLoc Exon Structure for
ENSG00000252727

Expression for ENSG00000252727 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ENSG00000252727 Gene

genes like me logo Genes that share expression patterns with ENSG00000252727: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ENSG00000252727 Gene

Orthologs for ENSG00000252727 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ENSG00000252727 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SCARNA11 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SCARNA11 35
  • 80 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm23751 35
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SCARNA11 35
  • 77 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SCARNA11 35
  • 60 (a)
OneToMany
chicken
(Gallus gallus)
Aves SCARNA11 35
  • 53 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SCARNA11 35
  • 51 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SCARNA11 35
  • 57 (a)
OneToMany
Species where no ortholog for ENSG00000252727 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ENSG00000252727 Gene

ENSEMBL:
Gene Tree for ENSG00000252727 (if available)
TreeFam:
Gene Tree for ENSG00000252727 (if available)

Paralogs for ENSG00000252727 Gene

No data available for Paralogs for ENSG00000252727 Gene

Variants for ENSG00000252727 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for ENSG00000252727 Gene

Disorders for ENSG00000252727 Gene

No disorders were found for ENSG00000252727 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ENSG00000252727 Gene

Publications for ENSG00000252727 Gene

No publications were found for ENSG00000252727 Gene.

Products for ENSG00000252727 Gene

Sources for ENSG00000252727 Gene

Content
Loading form....