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ENSG00000234539 Gene

protein-coding   GIFtS: 15
GCID: GC06Mj32014          (predicted)

ENSG00000234539


  Search for ENSG00000234539
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
ATF6-beta3     CAMP Response Element-Binding Protein-Related Protein3
CREBL13     CAMP-Dependent Transcription Factor ATF-6 Beta3
Creb-rp3     CAMP-Responsive Element-Binding Protein-Like 13
G133     Protein G133
Activating Transcription Factor 6 Beta3     

External Ids:    Ensembl: ENSG000002345397   UniProtKB: Q999413   

Export aliases for ENSG00000234539 gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ENSG00000234539 Gene:
ENSG00000234539 is a protein-coding gene.

UniProtKB/Swiss-Prot: ATF6B_HUMAN, Q99941
Function: Transcriptional factor that acts in the unfolded protein response (UPR) pathway by activating UPR target
genes induced during ER stress. Binds DNA on the 5'-CCAC[GA]-3' half of the ER stress response element (ERSE)
(5'-CCAATN(9)CCAC[GA]-3') when NF-Y is bound to ERSE




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for ENSG00000234539
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidENSG00000234539 promoter sequence
   Search Chromatin IP Primers for ENSG00000234539

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ENSG00000234539


Genomic Location:
Chromosome:6   

Ensembl cytogenetic band:  HSCHR6_MHC_COXp21.33   

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06Mj32014:       (about GC identifiers)

Start:
32,014,365 bp from start of contig ALT_REF_LOCI_2      End:
32,044,486 bp from start of contig ALT_REF_LOCI_2
Size:
30,122 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ATF6B_HUMAN, Q99941 (See protein sequence)
Recommended Name: Cyclic AMP-dependent transcription factor ATF-6 beta  
Size: 703 amino acids; 76709 Da
Subunit: Homodimer and heterodimer with ATF6-alpha. The dimer interacts with the nuclear transcription factor Y
(NF-Y) trimer through direct binding to NF-Y subunit C (NF-YC)
Sequence caution: Sequence=AAC50888.1; Type=Frameshift; Positions=600; Sequence=AAG14898.1; Type=Frameshift;
Positions=600;
Secondary accessions: B0UYX6 Q13269 Q14343 Q14345 Q5SSW7 Q99635 Q99637 Q9H3V9 Q9H3W1 Q9NPL0
Alternative splicing: 2 isoforms:  Q99941-1   Q99941-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ENSG00000234539: NX_Q99941

Explore proteomics data for ENSG00000234539 at MOPED

Post-translational modifications: 

  • N-glycosylated1
  • During unfolded protein response an approximative 60 kDa fragment containing the cytoplasmic transcription factor
    domain is released by proteolysis. The cleavage is probably performed sequentially by site-1 and site-2 proteases1
  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ENSG00000234539 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB


    ENSEMBL proteins: 
     ENSP00000404725   ENSP00000391131   ENSP00000399944   ENSP00000449117  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR004827 bZIP

    Graphical View of Domain Structure for InterPro Entry Q99941

    ProtoNet protein and cluster: Q99941

    1 Blocks protein domain: IPB011616 bZIP transcription factor

    UniProtKB/Swiss-Prot: ATF6B_HUMAN, Q99941
    Domain: The basic domain functions as a nuclear localization signal
    Domain: The basic leucine-zipper domain is sufficient for association with the NF-Y trimer and binding to ERSE
    Similarity: Belongs to the bZIP family. ATF subfamily
    Similarity: Contains 1 bZIP (basic-leucine zipper) domain


    ENSG00000234539 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ATF6B_HUMAN, Q99941
    Function: Transcriptional factor that acts in the unfolded protein response (UPR) pathway by activating UPR target
    genes induced during ER stress. Binds DNA on the 5'-CCAC[GA]-3' half of the ER stress response element (ERSE)
    (5'-CCAATN(9)CCAC[GA]-3') when NF-Y is bound to ERSE

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003700sequence-specific DNA binding transcription factor activity ----
    GO:0043565sequence-specific DNA binding ----
         
    ENSG00000234539 for ontologies           About GeneDecksing


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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    ATF6B_HUMAN, Q99941: Endoplasmic reticulum membrane; Single-pass type II membrane protein
    ATF6B_HUMAN, Q99941: Processed cyclic AMP-dependent transcription factor ATF-6 beta: Nucleus. Note=Under ER
    stress the cleaved N-terminal cytoplasmic domain translocates into the nucleus

    Gene Ontology (GO): Selected cellular component terms (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus ----
    GO:0005730nucleolus ----
    GO:0005789endoplasmic reticulum membrane ----
    GO:0005925focal adhesion ----

    ENSG00000234539 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ENSG00000234539
    Interactions:

        Search GeneGlobe Interaction Network for ENSG00000234539

    STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

    Selected Interacting proteins for ENSG00000234539 (Q999411, 3 ENSP000004047254) via UniProtKB, MINT, STRING, and/or I2D (see all 11)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ATF6P188503I2D: score=3 
    MBTPS1Q147033I2D: score=2 
    NFYCQ139523I2D: score=2 
    MBTPS2O434623I2D: score=1 
    NFYAP235113I2D: score=1 
    About this table

    Gene Ontology (GO): 4 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-templated ----
    GO:0006355regulation of transcription, DNA-templated ----
    GO:0006986response to unfolded protein ----
    GO:0007165signal transduction ----

    ENSG00000234539 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Tocris compounds for ENSG00000234539 (ATF6B)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000427136(uc011fkn.1 uc011fkp.2 uc011fkq.2) ENST00000439240(uc011fko.2)
    ENST00000417614 ENST00000477445 ENST00000465605 ENST00000498564(uc011fkr.2 uc011fks.2)
    ENST00000477295 ENST00000475964 ENST00000549095(uc011fkm.1)
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    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    See probesets specificity/sensitivity at GeneAnnot
    CGAP TAG: --

    ENSG00000234539 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ENSG00000234539 Protein Expression

    UniProtKB/Swiss-Prot: ATF6B_HUMAN, Q99941
    Tissue specificity: Ubiquitous

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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      --

    ENSEMBL Gene Tree for ENSG00000234539 (if available)
    TreeFam Gene Tree for ENSG00000234539 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ENSG00000234539 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ENSG00000234539)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-I+-acetylation features. (PubMed id 22223895)2 Bienvenut W.V....Giglione C. (amp 2012)
    2. N-terminal acetylome analyses and functional insights of the N- terminal acetyltransferase NatB. (PubMed id 22814378)2 Van Damme P....Aldabe R. (Proc. Natl. Acad. Sci. U.S.A. 2012)
    3. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)2 Mungall A.J.... Beck S. (Nature 2003)
    4. Analysis of the gene-dense major histocompatibility complex class III region and its comparison to mouse. (PubMed id 14656967)2 Xie T.... Hood L. (Genome Res. 2003)
    5. Identification of the G13 (cAMP-response-element-binding protein- related protein) gene product related to activating transcription factor 6 as a transcriptional activator of the mammalian unfolded protein response. (PubMed id 11256944)2 Haze K....Mori K. (Biochem. J. 2001)
    6. The gene G13 in the class III region of the human MHC encodes a potential DNA-binding protein. (PubMed id 8870652)2 Khanna A. and Campbell R.D. (Biochem. J. 1996)
    7. Alternate promoters and alternate splicing of human tenascin-X, a gene with 5' and 3' ends buried in other genes. (PubMed id 8923003)2 Speek M.... Miller W.L. (Hum. Mol. Genet. 1996)
    8. A novel Creb family gene telomeric of HLA-DRA in the HLA complex. (PubMed id 8586413)2 Min J....Chaplin D.D. (Genomics 1995)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Ensembl:ENSG00000234539

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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      --

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ENSG00000234539 gene:
    Search GeneIP for patents involving ENSG00000234539

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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     inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for ENSG00000234539
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